Rroxscaffold_3G00272560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011434
Physical Location & Seq
Forward (+)
64640608 .. 64642863
2256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00272560.1

Sequence Viewer

Length: 1068 bp
ATGGAAGAGCCCCAATCGGCCCAGTCTGCCCAATCCGGGAAGCTTCTGCGATACGCGCTGCGATCTGTGACTAAACCGAAGGAGGAGAAGCCACCGGCGGCAGAATTGTCCAACCCCTCTGCGTCTAAGAGGGGAAGGCCTGCATCAAACGTGAGCAAAAGCGTGAGTGTGCTTGATCTTTCGGGCAAGGACAAGCCTGTCAAGCCACCCAGGAGGCTCTCTGTTCCTAACAAGGCGGCTGGAACTCCAGCTCCGAAACTGGGTGGGAACATCACGCCCATTTCGGAGGCCAGATCAAGGAGGTCTGCCAAAAGCGAAACACCTGCTTCTGATGCTTCTAGGCTGACAAGTCGGAAGAAGTTCAGTATTCTGTCCTCAGAGTCATACTGGCTTTCGCAGATTAAGCTGTCCGAGGCTGCTGGCAAGCACTCAGTTTCACTTGGGTTTTTCAAACTAGCCTTGGAGGCGGGATGTGAGCAACCTCTTCAGCGATTGCGAGATGAGCTAAAAAGCTATGCACTTCGTCATAAACTTGGTGATGCTGACCTTGCAGTCCCACTGAAAGAGTTATTTGAGAGCTACGGTGTTGTAGAAAACGAGCAGTTGCAGGTCTCCGAAACCTGTTCCCACATACCTGAAGAGGGGACTCGGTCTTCTGATGAAGATGCCAAGAGCTCTTCATCTACAATGGGAACTAGGAAACTGAAACCCAAGTCGTTGAACACTGATGCTGCTCAAGTTTCTCCTGTCAAAAACAAAGCCAAGAAAGAAATGCCTCAGAAGAGCACTCCTGCAACCAGGACTAGGGCATCTGTGGCAAACAAGTCTTCAGCTCCAGGACCTGTTTCTGACTCTGGGATGCGCAGGTTAACAGCAAAGAAACCCCAGAACCCGATTAAGCCAGAAGCTAAGAATGAAAGGGATAGGAAGAAGCAGGGGAACAAATCTGCTGTTGAGCAAGGCAAGTGCTCAGTTAGCGCTACATCTGCAGAGGAAGCACTCAATGAGAACAAAGAAAATGAGGATGCTGCCTCAATGGAGGAGATAAGTTTGACTGAAGTCGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

38.23

Weight (kDa)

9.66

Isoelectric Point (pI)

61.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62550
fragaria_vesca FvH4_5g15300 FvH4_5g15300 FvH4_5g15300
malus_domestica MD01G1041800.v1.1 MD06G1189400.v1.1 MD14G1196400.v1.1
prunus_persica Prupe.5G188200_v2.0.a1
pyrus_communis pycom06g16830 pycom14g16310
rosa_chinensis RchiOBHm_Chr7g0180761
rosa_laevigata RLG00000005232
rosa_multiflora Rmu_sc0007457.1_g000012
rosa_roxburghii Rroxscaffold_3G00272560
rosa_rugosa Rorug06G0435800
rosa_samantha Rh7AG037500 Rh7BG037200 Rh7CG038900 Rh7DG037400
rosa_wichuraiana Rw7G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 331
AasI GACNNNNNNGTC 2 cut(s) 197, 551
Acc16I TGCGCA 1 cut(s) 863
Acc36I ACCTGC 3 cut(s) 331, 598, 855
AccII CGCG 1 cut(s) 56
AciI CCGC 3 cut(s) 98, 236, 467
AcuI CTGAAG 3 cut(s) 470, 657, 813
AfeI AGCGCT 1 cut(s) 979
AfiI CCNNNNNNNGG 5 cut(s) 36, 260, 297, 641, 804
AgsI TTSAA 2 cut(s) 451, 721
AjnI CCWGG 3 cut(s) 209, 797, 835
AloI GAACNNNNNNTCC 2 cut(s) 235, 267
AluBI AGCT 9 cut(s) 43, 251, 406, 505, 513, 579, 675, 833, 908
AluI AGCT 9 cut(s) 43, 251, 406, 505, 513, 579, 675, 833, 908
Alw21I GWGCWC 3 cut(s) 677, 788, 971
Alw26I GTCTC 1 cut(s) 616
AlwNI CAGNNNCTG 1 cut(s) 842
Aor51HI AGCGCT 1 cut(s) 979
AoxI GGCC 3 cut(s) 18, 137, 288
ApeKI GCWGC 4 cut(s) 58, 416, 731, 1028
Asp700I GAANNNNTTC 1 cut(s) 359
AspLEI GCGC 3 cut(s) 58, 864, 980
AspS9I GGNCC 2 cut(s) 19, 839
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 548
AvaII GGWCC 1 cut(s) 839
BanII GRGCYC 2 cut(s) 12, 677
BbsI GAAGAC 2 cut(s) 645, 819
Bbv12I GWGCWC 3 cut(s) 677, 788, 971
BbvI GCAGC 4 cut(s) 45, 403, 718, 1015
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 3 cut(s) 211, 799, 837
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 616
BfaI CTAG 4 cut(s) 339, 455, 696, 804
BfmI CTRYAG 1 cut(s) 987
BfoI RGCGCY 1 cut(s) 981
BfuAI ACCTGC 3 cut(s) 331, 598, 855
BglI GCCNNNNNGGC 1 cut(s) 464
BisI GCNGC 6 cut(s) 59, 99, 237, 417, 732, 1029
BlsI GCNGC 6 cut(s) 60, 100, 238, 418, 733, 1030
Bme1390I CCNGG 4 cut(s) 37, 211, 799, 837
Bme18I GGWCC 1 cut(s) 839
BmgT120I GGNCC 2 cut(s) 19, 839
BmrFI CCNGG 4 cut(s) 37, 211, 799, 837
BmrI ACTGGG 2 cut(s) 16, 269
BmsI GCATC 8 cut(s) 152, 322, 529, 655, 718, 818, 849, 1015
BmuI ACTGGG 2 cut(s) 16, 269
BoxI GACNNNNGTC 1 cut(s) 1058
BpiI GAAGAC 2 cut(s) 645, 819
BpmI CTGGAG 2 cut(s) 231, 819
BpuEI CTTGAG 1 cut(s) 720
BpuMI CCSGG 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 616
BsaJI CCNNGG 3 cut(s) 209, 411, 459
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 5 cut(s) 36, 260, 297, 641, 804
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 3 cut(s) 22, 264, 392
BseBI CCWGG 3 cut(s) 211, 799, 837
BseDI CCNNGG 3 cut(s) 209, 411, 459
BseGI GGATG 3 cut(s) 476, 864, 1030
BseLI CCNNNNNNNGG 5 cut(s) 36, 260, 297, 641, 804
BseMII CTCAG 4 cut(s) 390, 444, 791, 984
BseNI ACTGG 3 cut(s) 22, 264, 392
BseRI GAGGAG 2 cut(s) 98, 1055
BseXI GCAGC 4 cut(s) 45, 403, 718, 1015
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 3 cut(s) 20, 139, 290
BsiHKAI GWGCWC 3 cut(s) 677, 788, 971
BsiSI CCGG 2 cut(s) 36, 95
BslFI GGGAC 2 cut(s) 539, 658
BslI CCNNNNNNNGG 5 cut(s) 36, 260, 297, 641, 804
BsmAI GTCTC 1 cut(s) 616
BsmFI GGGAC 2 cut(s) 539, 658
BsnI GGCC 3 cut(s) 20, 139, 290
Bso31I GGTCTC 1 cut(s) 616
Bsp1286I GDGCHC 4 cut(s) 12, 677, 788, 971
Bsp143I GATC 3 cut(s) 62, 175, 293
BspACI CCGC 3 cut(s) 98, 236, 467
BspANI GGCC 3 cut(s) 20, 139, 290
BspCNI CTCAG 4 cut(s) 389, 443, 790, 983
BspFNI CGCG 1 cut(s) 56
BspMAI CTGCAG 1 cut(s) 991
BspMI ACCTGC 3 cut(s) 331, 598, 855
BspQI GCTCTTC 2 cut(s) 682, 776
BspTNI GGTCTC 1 cut(s) 616
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 3 cut(s) 22, 264, 392
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 3 cut(s) 209, 411, 459
BssMI GATC 3 cut(s) 62, 175, 293
BssT1I CCWWGG 1 cut(s) 459
Bst2UI CCWGG 3 cut(s) 211, 799, 837
Bst4CI ACNGT 1 cut(s) 584
Bst6I CTCTTC 4 cut(s) 489, 633, 682, 776
BstC8I GCNNGC 3 cut(s) 141, 421, 425
BstDEI CTNAG 6 cut(s) 126, 376, 430, 777, 909, 970
BstF5I GGATG 3 cut(s) 476, 864, 1030
BstFNI CGCG 1 cut(s) 56
BstH2I RGCGCY 1 cut(s) 981
BstHHI GCGC 3 cut(s) 58, 864, 980
BstKTI GATC 3 cut(s) 65, 178, 296
BstMAI GTCTC 1 cut(s) 616
BstMBI GATC 3 cut(s) 62, 175, 293
BstNI CCWGG 3 cut(s) 211, 799, 837
BstPAI GACNNNNGTC 1 cut(s) 1058
BstSCI CCNGG 4 cut(s) 35, 209, 797, 835
BstSFI CTRYAG 1 cut(s) 987
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 4 cut(s) 45, 403, 718, 1015
BstV2I GAAGAC 2 cut(s) 645, 819
BsuRI GGCC 3 cut(s) 20, 139, 290
BtsCI GGATG 3 cut(s) 476, 864, 1030
BtsIMutI CAGTG 2 cut(s) 557, 723
BveI ACCTGC 3 cut(s) 331, 598, 855
Cac8I GCNNGC 3 cut(s) 141, 421, 425
CaiI CAGNNNCTG 1 cut(s) 842
CfoI GCGC 3 cut(s) 58, 864, 980
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 2 cut(s) 19, 839
CseI GACGC 1 cut(s) 111
DdeI CTNAG 6 cut(s) 126, 376, 430, 777, 909, 970
DpnI GATC 3 cut(s) 64, 177, 295
DpnII GATC 3 cut(s) 62, 175, 293
DrdI GACNNNNNNGTC 2 cut(s) 197, 551
DseDI GACNNNNNNGTC 2 cut(s) 197, 551
Eam1104I CTCTTC 4 cut(s) 489, 633, 682, 776
EarI CTCTTC 4 cut(s) 489, 633, 682, 776
Ecl136II GAGCTC 1 cut(s) 675
Eco130I CCWWGG 1 cut(s) 459
Eco147I AGGCCT 1 cut(s) 139
Eco24I GRGCYC 2 cut(s) 12, 677
Eco31I GGTCTC 1 cut(s) 616
Eco47I GGWCC 1 cut(s) 839
Eco47III AGCGCT 1 cut(s) 979
Eco53kI GAGCTC 1 cut(s) 675
Eco57I CTGAAG 3 cut(s) 470, 657, 813
EcoICRI GAGCTC 1 cut(s) 675
EcoO109I RGGNCCY 1 cut(s) 839
EcoRII CCWGG 3 cut(s) 209, 797, 835
EcoT14I CCWWGG 1 cut(s) 459
EcoT38I GRGCYC 2 cut(s) 12, 677
ErhI CCWWGG 1 cut(s) 459
FaiI YATR 5 cut(s) 385, 516, 528, 632, 1066
FaqI GGGAC 2 cut(s) 539, 658
FauI CCCGC 1 cut(s) 460
Fnu4HI GCNGC 6 cut(s) 59, 99, 237, 417, 732, 1029
FokI GGATG 3 cut(s) 483, 871, 1037
FriOI GRGCYC 2 cut(s) 12, 677
Fsp4HI GCNGC 6 cut(s) 59, 99, 237, 417, 732, 1029
FspBI CTAG 4 cut(s) 339, 455, 696, 804
FspI TGCGCA 1 cut(s) 863
GlaI GCGC 3 cut(s) 57, 863, 979
GluI GCNGC 6 cut(s) 59, 99, 237, 417, 732, 1029
GsuI CTGGAG 2 cut(s) 231, 819
HaeII RGCGCY 1 cut(s) 981
HaeIII GGCC 3 cut(s) 20, 139, 290
HapII CCGG 2 cut(s) 36, 95
HgaI GACGC 1 cut(s) 111
HhaI GCGC 3 cut(s) 58, 864, 980
Hin6I GCGC 3 cut(s) 56, 862, 978
HinP1I GCGC 3 cut(s) 56, 862, 978
HincII GTYRAC 1 cut(s) 870
HindII GTYRAC 1 cut(s) 870
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 3 cut(s) 380, 646, 851
HpaI GTTAAC 1 cut(s) 870
HpaII CCGG 2 cut(s) 36, 95
HphI GGTGA 1 cut(s) 548
Hpy166II GTNNAC 1 cut(s) 870
Hpy8I GTNNAC 1 cut(s) 870
HpyAV CCTTC 2 cut(s) 73, 129
HpyCH4III ACNGT 1 cut(s) 584
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 6 cut(s) 143, 518, 551, 607, 794, 989
HpyF3I CTNAG 6 cut(s) 126, 376, 430, 777, 909, 970
HpySE526I ACGT 1 cut(s) 150
HspAI GCGC 3 cut(s) 56, 862, 978
KspAI GTTAAC 1 cut(s) 870
Kzo9I GATC 3 cut(s) 62, 175, 293
LguI GCTCTTC 2 cut(s) 682, 776
LmnI GCTCC 2 cut(s) 256, 838
Lsp1109I GCAGC 4 cut(s) 45, 403, 718, 1015
LweI GCATC 8 cut(s) 152, 322, 529, 655, 718, 818, 849, 1015
MaeI CTAG 4 cut(s) 339, 455, 696, 804
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 67
MalI GATC 3 cut(s) 64, 177, 295
MboI GATC 3 cut(s) 62, 175, 293
MhlI GDGCHC 4 cut(s) 12, 677, 788, 971
MluCI AATT 1 cut(s) 104
MlyI GAGTC 3 cut(s) 389, 640, 845
MmeI TCCRAC 2 cut(s) 135, 332
MroXI GAANNNNTTC 1 cut(s) 359
MseI TTAA 3 cut(s) 402, 869, 897
MspI CCGG 2 cut(s) 36, 95
MspR9I CCNGG 4 cut(s) 37, 211, 799, 837
MvaI CCWGG 3 cut(s) 211, 799, 837
MvnI CGCG 1 cut(s) 56
NciI CCSGG 1 cut(s) 37
NdeII GATC 3 cut(s) 62, 175, 293
NmuCI GTSAC 1 cut(s) 67
NsbI TGCGCA 1 cut(s) 863
PaqCI CACCTGC 1 cut(s) 331
PceI AGGCCT 1 cut(s) 139
PciSI GCTCTTC 2 cut(s) 682, 776
PdmI GAANNNNTTC 1 cut(s) 359
PflFI GACNNNGTC 1 cut(s) 649
PfoI TCCNGGA 2 cut(s) 35, 835
PkrI GCNGC 6 cut(s) 60, 100, 238, 418, 733, 1030
PleI GAGTC 3 cut(s) 388, 640, 845
PpsI GAGTC 3 cut(s) 388, 640, 845
PpuMI RGGWCCY 1 cut(s) 839
PshAI GACNNNNGTC 1 cut(s) 1058
Psp124BI GAGCTC 1 cut(s) 677
Psp5II RGGWCCY 1 cut(s) 839
Psp6I CCWGG 3 cut(s) 209, 797, 835
PspGI CCWGG 3 cut(s) 209, 797, 835
PspPI GGNCC 2 cut(s) 19, 839
PspPPI RGGWCCY 1 cut(s) 839
PstI CTGCAG 1 cut(s) 991
PstNI CAGNNNCTG 1 cut(s) 842
PsyI GACNNNGTC 1 cut(s) 649
SacI GAGCTC 1 cut(s) 677
SapI GCTCTTC 2 cut(s) 682, 776
SaqAI TTAA 3 cut(s) 402, 869, 897
SatI GCNGC 6 cut(s) 59, 99, 237, 417, 732, 1029
Sau3AI GATC 3 cut(s) 62, 175, 293
Sau96I GGNCC 2 cut(s) 19, 839
SchI GAGTC 3 cut(s) 389, 640, 845
ScrFI CCNGG 4 cut(s) 37, 211, 799, 837
SduI GDGCHC 4 cut(s) 12, 677, 788, 971
SfaNI GCATC 8 cut(s) 152, 322, 529, 655, 718, 818, 849, 1015
SfcI CTRYAG 1 cut(s) 987
SgrAI CRCCGGYG 1 cut(s) 94
SinI GGWCC 1 cut(s) 839
SmlI CTYRAG 1 cut(s) 735
SmoI CTYRAG 1 cut(s) 735
Sse9I AATT 1 cut(s) 104
SseBI AGGCCT 1 cut(s) 139
SsiI CCGC 3 cut(s) 98, 236, 467
SspMI CTAG 4 cut(s) 339, 455, 696, 804
SstI GAGCTC 1 cut(s) 677
StuI AGGCCT 1 cut(s) 139
StyD4I CCNGG 4 cut(s) 35, 209, 797, 835
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 1 cut(s) 584
TaiI ACGT 1 cut(s) 153
TaqII GACCGA 1 cut(s) 639
TasI AATT 1 cut(s) 104
TauI GCSGC 2 cut(s) 101, 239
Tru1I TTAA 3 cut(s) 402, 869, 897
Tru9I TTAA 3 cut(s) 402, 869, 897
TscAI CASTG 2 cut(s) 564, 730
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 4 cut(s) 58, 416, 731, 1028
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 3 cut(s) 669, 675, 930
TspRI CASTG 2 cut(s) 564, 730
Tth111I GACNNNGTC 1 cut(s) 649
VpaK11BI GGWCC 1 cut(s) 839
XmnI GAANNNNTTC 1 cut(s) 359
XspI CTAG 4 cut(s) 339, 455, 696, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.