MD06G1189400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0011434
Physical Location & Seq
Reverse (-)
32620914 .. 32623507
2594 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1189400.v1.1.491

Sequence Viewer

Length: 1071 bp
ATGGAGGAACCCCAATCTGCTCAATCCGCCCAATCTGGGAAGCTTCTTCGGTATGCGCTCCGTTCGGGGTCTAAAACGAAGGAGGAGAAGCTGCCGGCGGCGGCCGCTGAACCCTCCTCTAACAATTCTGCCACCAAGAGGGGAAGGCCTGCATCAAATATGAGTAAAAGTGTGGGGGTTCTTGATCTCTCTGGCAAGGACAAGCCTGCCAAGCCGACCAGAAGGCTCTCTGTTCCTTCCAAGCCGCCCACTACTCCAGCTCCGAAACTTGGTGGCAACATCACTCCAATTTCTGAGGCTAGATCAAGGAGGTCTGTGAGAAGTGAATCCCCTGCTTCTTCTGATGTCTCTAGACCGACAAGCCGGAAGAAGTTCAATGTTCTGGCCTCACCATCTTACTGGCTGCAGCAAATTAAGCTTTCTGAGGCTGCTGCCAAGCACTCGATTTCACTCGGGTTTTTCAAACTAGCCTTGGAGGCTGGATGTGAGTCTCTTCAACTGCGCCAGGAGCTAAAATCTTACATTGATCGGTACGAGCTTAGTGACCTTGAAGACCCTCTGAAGGAATTACTGGAGAGCAAAACTGTTGCAGTAAATGAGCAGGCTCAGGTCTCTGAAACCTGTTCTCAGGTGCTCGACGAGGGGACTCGGTCTTCTGATGATGATGCCAAGAGCTGCTCTTCTACAATGGGAAGTGGGAAACTGAAACCCAAGTCATTCAACACTGAAGCTGCTCAAGTTTCTCCAGTGAAGGCCGCAGCCAAGAAGGAGATTGCTCCTAAAAGCACTCCGGCAGCCAGGACTAGGGCACCTTCAGCAAAGAGTTCTTCGAATTCAGGACCCATATGTGACAATGGTGCTCGCGTATCTACTGTTAAGAAACCCCAGAAGCCGAGTGTGCAAGATTCTAACAAAGTAAAGGACAGGAAGAAGAAGCAGGGGAATCAAACTGCATGTGAACAAGGTTATTCAACGCTGCCGCAGACTCAGTTAACCCTACTCGTGCAGAAGAAGCACTTCAGGAGAACAAAGAAAATCAGGATGCTCCCTCGACGGAAGCTATCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

357

Amino Acids

38.58

Weight (kDa)

10.08

Isoelectric Point (pI)

62.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62550
fragaria_vesca FvH4_5g15300 FvH4_5g15300 FvH4_5g15300
malus_domestica MD01G1041800.v1.1 MD06G1189400.v1.1 MD14G1196400.v1.1
prunus_persica Prupe.5G188200_v2.0.a1
pyrus_communis pycom06g16830 pycom14g16310
rosa_chinensis RchiOBHm_Chr7g0180761
rosa_laevigata RLG00000005232
rosa_multiflora Rmu_sc0007457.1_g000012
rosa_roxburghii Rroxscaffold_3G00272560
rosa_rugosa Rorug06G0435800
rosa_samantha Rh7AG037500 Rh7BG037200 Rh7CG038900 Rh7DG037400
rosa_wichuraiana Rw7G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 808
AccII CGCG 1 cut(s) 864
AciI CCGC 7 cut(s) 27, 98, 101, 105, 245, 756, 980
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 1 cut(s) 832
AcuI CTGAAG 4 cut(s) 581, 747, 798, 1003
AfaI GTAC 1 cut(s) 533
AfiI CCNNNNNNNGG 5 cut(s) 36, 138, 269, 562, 804
AgsI TTSAA 6 cut(s) 376, 463, 497, 551, 721, 972
AjnI CCWGG 2 cut(s) 504, 797
AluBI AGCT 9 cut(s) 43, 91, 260, 418, 511, 538, 675, 731, 1060
AluI AGCT 9 cut(s) 43, 91, 260, 418, 511, 538, 675, 731, 1060
Alw21I GWGCWC 2 cut(s) 636, 862
Alw26I GTCTC 3 cut(s) 352, 495, 616
Ama87I CYCGRG 1 cut(s) 452
AoxI GGCC 4 cut(s) 102, 146, 384, 753
ApoI RAATTY 1 cut(s) 832
Asp700I GAANNNNTTC 2 cut(s) 371, 1016
AspLEI GCGC 2 cut(s) 58, 504
AspS9I GGNCC 1 cut(s) 839
AsuHPI GGTGA 1 cut(s) 381
AsuII TTCGAA 1 cut(s) 830
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 1 cut(s) 839
BaeGI GKGCMC 1 cut(s) 811
BanI GGYRCC 1 cut(s) 808
BauI CACGAG 1 cut(s) 1001
BbsI GAAGAC 2 cut(s) 558, 645
Bbv12I GWGCWC 2 cut(s) 636, 862
BccI CCATC 1 cut(s) 400
BciT130I CCWGG 2 cut(s) 506, 799
BcoDI GTCTC 3 cut(s) 352, 495, 616
BfaI CTAG 4 cut(s) 300, 351, 467, 804
BfmI CTRYAG 1 cut(s) 404
BglI GCCNNNNNGGC 1 cut(s) 476
Bme1390I CCNGG 2 cut(s) 506, 799
Bme18I GGWCC 1 cut(s) 839
BmeT110I CYCGRG 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 839
BmiI GGNNCC 3 cut(s) 9, 810, 841
BmrFI CCNGG 2 cut(s) 506, 799
BmsI GCATC 3 cut(s) 161, 655, 1032
BpiI GAAGAC 2 cut(s) 558, 645
BpmI CTGGAG 3 cut(s) 240, 593, 729
Bpu10I CCTNAGC 1 cut(s) 606
Bpu14I TTCGAA 1 cut(s) 830
BpuEI CTTGAG 1 cut(s) 720
BsaI GGTCTC 1 cut(s) 616
BsaJI CCNNGG 1 cut(s) 471
BsaXI ACNNNNNCTCC 2 cut(s) 244, 274
Bsc4I CCNNNNNNNGG 5 cut(s) 36, 138, 269, 562, 804
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 3 cut(s) 404, 576, 746
BseBI CCWGG 2 cut(s) 506, 799
BseDI CCNNGG 1 cut(s) 471
BseGI GGATG 2 cut(s) 488, 1047
BseLI CCNNNNNNNGG 5 cut(s) 36, 138, 269, 562, 804
BseMII CTCAG 5 cut(s) 285, 414, 620, 641, 1001
BseNI ACTGG 3 cut(s) 404, 576, 746
BseRI GAGGAG 2 cut(s) 98, 106
BseSI GKGCMC 1 cut(s) 811
BseX3I CGGCCG 1 cut(s) 102
BsgI GTGCAG 1 cut(s) 1025
Bsh1236I CGCG 1 cut(s) 864
Bsh1285I CGRYCG 1 cut(s) 105
BshFI GGCC 4 cut(s) 104, 148, 386, 755
BshNI GGYRCC 1 cut(s) 808
BsiEI CGRYCG 1 cut(s) 105
BsiHKAI GWGCWC 2 cut(s) 636, 862
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 3 cut(s) 95, 364, 791
BslFI GGGAC 1 cut(s) 658
BslI CCNNNNNNNGG 5 cut(s) 36, 138, 269, 562, 804
BsmAI GTCTC 3 cut(s) 352, 495, 616
BsmFI GGGAC 1 cut(s) 658
BsnI GGCC 4 cut(s) 104, 148, 386, 755
Bso31I GGTCTC 1 cut(s) 616
BsoBI CYCGRG 1 cut(s) 452
Bsp119I TTCGAA 1 cut(s) 830
Bsp1286I GDGCHC 3 cut(s) 636, 811, 862
Bsp143I GATC 3 cut(s) 184, 302, 526
BspACI CCGC 7 cut(s) 27, 98, 101, 105, 245, 756, 980
BspANI GGCC 4 cut(s) 104, 148, 386, 755
BspCNI CTCAG 5 cut(s) 286, 415, 619, 640, 1000
BspFNI CGCG 1 cut(s) 864
BspLI GGNNCC 3 cut(s) 9, 810, 841
BspMAI CTGCAG 1 cut(s) 408
BspQI GCTCTTC 1 cut(s) 685
BspT104I TTCGAA 1 cut(s) 830
BspT107I GGYRCC 1 cut(s) 808
BspTNI GGTCTC 1 cut(s) 616
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 3 cut(s) 404, 576, 746
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 471
BssMI GATC 3 cut(s) 184, 302, 526
BssSI CACGAG 1 cut(s) 1001
BssT1I CCWWGG 1 cut(s) 471
Bst2BI CACGAG 1 cut(s) 1001
Bst2UI CCWGG 2 cut(s) 506, 799
Bst4CI ACNGT 2 cut(s) 586, 874
Bst6I CTCTTC 2 cut(s) 498, 685
BstBI TTCGAA 1 cut(s) 830
BstC8I GCNNGC 5 cut(s) 96, 150, 207, 603, 862
BstDEI CTNAG 6 cut(s) 294, 423, 539, 606, 627, 987
BstF5I GGATG 2 cut(s) 488, 1047
BstFNI CGCG 1 cut(s) 864
BstHHI GCGC 2 cut(s) 58, 504
BstKTI GATC 3 cut(s) 187, 305, 529
BstMAI GTCTC 3 cut(s) 352, 495, 616
BstMBI GATC 3 cut(s) 184, 302, 526
BstMCI CGRYCG 1 cut(s) 105
BstMWI GCNNNNNNNGC 9 cut(s) 26, 104, 211, 415, 476, 508, 815, 898, 1012
BstNI CCWGG 2 cut(s) 506, 799
BstNSI RCATGY 1 cut(s) 957
BstSCI CCNGG 2 cut(s) 504, 797
BstSFI CTRYAG 1 cut(s) 404
BstSLI GKGCMC 1 cut(s) 811
BstUI CGCG 1 cut(s) 864
BstV2I GAAGAC 2 cut(s) 558, 645
BstXI CCANNNNNNTGG 1 cut(s) 399
BstZI CGGCCG 1 cut(s) 102
BsuRI GGCC 4 cut(s) 104, 148, 386, 755
BtsCI GGATG 2 cut(s) 488, 1047
BtsIMutI CAGTG 2 cut(s) 723, 753
Cac8I GCNNGC 5 cut(s) 96, 150, 207, 603, 862
CciNI GCGGCCGC 1 cut(s) 102
CfoI GCGC 2 cut(s) 58, 504
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 839
Csp6I GTAC 1 cut(s) 532
CviAII CATG 1 cut(s) 954
CviQI GTAC 1 cut(s) 532
DdeI CTNAG 6 cut(s) 294, 423, 539, 606, 627, 987
DpnI GATC 3 cut(s) 186, 304, 528
DpnII GATC 3 cut(s) 184, 302, 526
EaeI YGGCCR 1 cut(s) 102
EagI CGGCCG 1 cut(s) 102
Eam1104I CTCTTC 2 cut(s) 498, 685
EarI CTCTTC 2 cut(s) 498, 685
EciI GGCGGA 1 cut(s) 16
EclXI CGGCCG 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 471
Eco147I AGGCCT 1 cut(s) 148
Eco31I GGTCTC 1 cut(s) 616
Eco47I GGWCC 1 cut(s) 839
Eco52I CGGCCG 1 cut(s) 102
Eco57I CTGAAG 4 cut(s) 581, 747, 798, 1003
Eco88I CYCGRG 1 cut(s) 452
EcoO109I RGGNCCY 1 cut(s) 839
EcoRI GAATTC 1 cut(s) 832
EcoRII CCWGG 2 cut(s) 504, 797
EcoT14I CCWWGG 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 471
FaeI CATG 1 cut(s) 957
FaiI YATR 5 cut(s) 54, 161, 845, 847, 955
FalI AAGNNNNNCTT 2 cut(s) 1001, 1033
FaqI GGGAC 1 cut(s) 658
FatI CATG 1 cut(s) 953
FauNDI CATATG 1 cut(s) 845
FokI GGATG 2 cut(s) 495, 1054
FspBI CTAG 4 cut(s) 300, 351, 467, 804
GlaI GCGC 2 cut(s) 57, 503
GsuI CTGGAG 3 cut(s) 240, 593, 729
HaeIII GGCC 4 cut(s) 104, 148, 386, 755
HapII CCGG 3 cut(s) 95, 364, 791
HhaI GCGC 2 cut(s) 58, 504
Hin1II CATG 1 cut(s) 957
Hin6I GCGC 2 cut(s) 56, 502
HinP1I GCGC 2 cut(s) 56, 502
HincII GTYRAC 1 cut(s) 993
HindII GTYRAC 1 cut(s) 993
HindIII AAGCTT 2 cut(s) 41, 416
HinfI GANTC 6 cut(s) 326, 488, 646, 905, 943, 985
HpaI GTTAAC 1 cut(s) 993
HpaII CCGG 3 cut(s) 95, 364, 791
HphI GGTGA 1 cut(s) 381
Hpy166II GTNNAC 2 cut(s) 959, 993
Hpy188I TCNGA 7 cut(s) 264, 295, 343, 424, 561, 616, 658
Hpy188III TCNNGA 5 cut(s) 182, 351, 837, 1021, 1039
Hpy8I GTNNAC 2 cut(s) 959, 993
Hpy99I CGWCG 2 cut(s) 641, 1056
HpyAV CCTTC 8 cut(s) 73, 138, 216, 246, 556, 745, 760, 822
HpyCH4III ACNGT 2 cut(s) 586, 874
HpyCH4V TGCA 6 cut(s) 152, 406, 590, 901, 953, 1006
HpyF10VI GCNNNNNNNGC 9 cut(s) 26, 104, 211, 415, 476, 508, 815, 898, 1012
HpyF3I CTNAG 6 cut(s) 294, 423, 539, 606, 627, 987
Hsp92II CATG 1 cut(s) 957
HspAI GCGC 2 cut(s) 56, 502
KroI GCCGGC 1 cut(s) 94
KroNI GCCGGC 1 cut(s) 96
KspAI GTTAAC 1 cut(s) 993
Kzo9I GATC 3 cut(s) 184, 302, 526
LguI GCTCTTC 1 cut(s) 685
LmnI GCTCC 5 cut(s) 63, 265, 508, 781, 1050
LweI GCATC 3 cut(s) 161, 655, 1032
MaeI CTAG 4 cut(s) 300, 351, 467, 804
MaeIII GTNAC 2 cut(s) 542, 848
MalI GATC 3 cut(s) 186, 304, 528
MboI GATC 3 cut(s) 184, 302, 526
MhlI GDGCHC 3 cut(s) 636, 811, 862
MluCI AATT 5 cut(s) 124, 288, 411, 566, 832
MlyI GAGTC 3 cut(s) 497, 640, 979
MroNI GCCGGC 1 cut(s) 94
MroXI GAANNNNTTC 2 cut(s) 371, 1016
MseI TTAA 3 cut(s) 414, 876, 992
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 3 cut(s) 95, 364, 791
MspR9I CCNGG 2 cut(s) 506, 799
MvaI CCWGG 2 cut(s) 506, 799
MvnI CGCG 1 cut(s) 864
MwoI GCNNNNNNNGC 9 cut(s) 26, 104, 211, 415, 476, 508, 815, 898, 1012
NaeI GCCGGC 1 cut(s) 96
NdeI CATATG 1 cut(s) 845
NdeII GATC 3 cut(s) 184, 302, 526
NgoMIV GCCGGC 1 cut(s) 94
NlaIII CATG 1 cut(s) 957
NlaIV GGNNCC 3 cut(s) 9, 810, 841
NmeAIII GCCGAG 1 cut(s) 918
NmuCI GTSAC 2 cut(s) 542, 848
NotI GCGGCCGC 1 cut(s) 102
NspI RCATGY 1 cut(s) 957
NspV TTCGAA 1 cut(s) 830
PceI AGGCCT 1 cut(s) 148
PciSI GCTCTTC 1 cut(s) 685
PdiI GCCGGC 1 cut(s) 96
PdmI GAANNNNTTC 2 cut(s) 371, 1016
PfeI GAWTC 3 cut(s) 326, 905, 943
PflFI GACNNNGTC 1 cut(s) 649
PleI GAGTC 3 cut(s) 496, 640, 979
PpsI GAGTC 3 cut(s) 496, 640, 979
PpuMI RGGWCCY 1 cut(s) 839
Psp5II RGGWCCY 1 cut(s) 839
Psp6I CCWGG 2 cut(s) 504, 797
PspGI CCWGG 2 cut(s) 504, 797
PspN4I GGNNCC 3 cut(s) 9, 810, 841
PspPI GGNCC 1 cut(s) 839
PspPPI RGGWCCY 1 cut(s) 839
PstI CTGCAG 1 cut(s) 408
PsyI GACNNNGTC 1 cut(s) 649
RsaI GTAC 1 cut(s) 533
RsaNI GTAC 1 cut(s) 532
SapI GCTCTTC 1 cut(s) 685
SaqAI TTAA 3 cut(s) 414, 876, 992
Sau3AI GATC 3 cut(s) 184, 302, 526
Sau96I GGNCC 1 cut(s) 839
SchI GAGTC 3 cut(s) 497, 640, 979
ScrFI CCNGG 2 cut(s) 506, 799
SduI GDGCHC 3 cut(s) 636, 811, 862
SfaNI GCATC 3 cut(s) 161, 655, 1032
SfcI CTRYAG 1 cut(s) 404
SfuI TTCGAA 1 cut(s) 830
SinI GGWCC 1 cut(s) 839
SmlI CTYRAG 1 cut(s) 735
SmoI CTYRAG 1 cut(s) 735
Sse9I AATT 5 cut(s) 124, 288, 411, 566, 832
SseBI AGGCCT 1 cut(s) 148
SsiI CCGC 7 cut(s) 27, 98, 101, 105, 245, 756, 980
SspMI CTAG 4 cut(s) 300, 351, 467, 804
StuI AGGCCT 1 cut(s) 148
StyD4I CCNGG 2 cut(s) 504, 797
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 2 cut(s) 586, 874
TaqI TCGA 4 cut(s) 443, 636, 830, 1051
TaqII GACCGA 2 cut(s) 370, 639
TasI AATT 5 cut(s) 124, 288, 411, 566, 832
TauI GCSGC 6 cut(s) 101, 104, 107, 247, 758, 982
TfiI GAWTC 3 cut(s) 326, 905, 943
Tru1I TTAA 3 cut(s) 414, 876, 992
Tru9I TTAA 3 cut(s) 414, 876, 992
TscAI CASTG 2 cut(s) 730, 753
TseFI GTSAC 2 cut(s) 542, 848
Tsp45I GTSAC 2 cut(s) 542, 848
TspGWI ACGGA 2 cut(s) 50, 1069
TspRI CASTG 2 cut(s) 730, 753
Tth111I GACNNNGTC 1 cut(s) 649
VpaK11BI GGWCC 1 cut(s) 839
XapI RAATTY 1 cut(s) 832
XbaI TCTAGA 1 cut(s) 350
XceI RCATGY 1 cut(s) 957
XmnI GAANNNNTTC 2 cut(s) 371, 1016
XspI CTAG 4 cut(s) 300, 351, 467, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.