Rh7CG038900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0011434
Physical Location & Seq
Reverse (-)
2614957 .. 2617439
2483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG038900.1

Sequence Viewer

Length: 1068 bp
ATGGAAGAGCCCCAATCGGCCCAGTCTGCTCAATCAGGGAAGCTTCTGCGATACGCGCTGCGATCTGTGACTAAACCGAAGGAGGAGAAGCCACCGGCAGCAGAATTGTCCAACCCCTCTGCGTCTGCGTCTAAGAGGGCAAGGCCTGCATCCAATGTGAGCAGAAGTGTGAGTGTGCTTGATCTTTCGGGCAAGGACAAGCCTGTCAAGCCACCGAGGAGGCTCTCTGTTCCTAACAAGGCGGCTGGAACTCCAGCTCCGAAACTGGGTGGGAACATCACTCCCATTTCCGAGGCTAGATCTAGGCGGTCTGCCAAAAGCGAAACGCCTGCTGCTGATGCTTCTAGGCTGACAAGTCGGAAGAAGTTCAGTATTCTGTCCTCAGAGTCATACTGGCTTTCGCAGATTAAGCTGTCCGAGGCTGCTGGGAAGCACTCAGTTTCACTTGGGTTTTTCAAACTAGCCTTGGAGGCGGGATGTGAGCAACCTCTTCAGCGATTGCGAGATGAGCTAAAAAGCTATGCACTTCGTCATAAACTTGGTGATGCTGACCTTGCAGTCCCACTGAAAGAGTTATTTGAGAGCTACGGTGTTGTAGAAAACGAGCAGTTGCAGGTCTCCGAAACCTGTTCCCACGTACCTGAAGAGGGGACTCGGTCTTCTGATGAAGATGCCAAGAGCTCTTCATCTACAATGGGAACTAGGAAACTGAAACCCAAGTCGTTGAACACTGATGCTGCTCAAGTTTCTCCGGTCAAAAACAAAGCCAAGAAGGAAATGCCCCAGAAGAGCACTCCTGCAACAAGGACTAGGGCATCTGTGGCAAAGAAGTCTTCAACTCCAGGACCTGTTTCTGACTCTGGGATGCGCAGGTCAACAGCAAAGAAACCCCAGAACCCGATTAAGCAAGAAGCTAAGAATGAAAGGGATAGGAAGAAGCAGGGGAACAAATCTGCTGTTGAACAAGGCTCAGTTAGCGCTACATCTGCAGAGGAAGCACTGAATGAGAACAAAGAAAATGAGGATGCTGCCTCAATGGAGGAGATAAGTTTGACTGAAGTTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

38.22

Weight (kDa)

9.71

Isoelectric Point (pI)

63.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62550
fragaria_vesca FvH4_5g15300 FvH4_5g15300 FvH4_5g15300
malus_domestica MD01G1041800.v1.1 MD06G1189400.v1.1 MD14G1196400.v1.1
prunus_persica Prupe.5G188200_v2.0.a1
pyrus_communis pycom06g16830 pycom14g16310
rosa_chinensis RchiOBHm_Chr7g0180761
rosa_laevigata RLG00000005232
rosa_multiflora Rmu_sc0007457.1_g000012
rosa_roxburghii Rroxscaffold_3G00272560
rosa_rugosa Rorug06G0435800
rosa_samantha Rh7AG037500 Rh7BG037200 Rh7CG038900 Rh7DG037400
rosa_wichuraiana Rw7G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 203, 557
Acc16I TGCGCA 1 cut(s) 869
Acc36I ACCTGC 2 cut(s) 604, 861
AccII CGCG 1 cut(s) 56
AciI CCGC 3 cut(s) 242, 307, 473
AcuI CTGAAG 2 cut(s) 476, 663
AfaI GTAC 1 cut(s) 639
AfeI AGCGCT 1 cut(s) 979
AfiI CCNNNNNNNGG 2 cut(s) 266, 647
AgsI TTSAA 4 cut(s) 457, 727, 837, 962
AjnI CCWGG 1 cut(s) 841
AloI GAACNNNNNNTCC 2 cut(s) 241, 273
AluBI AGCT 8 cut(s) 43, 257, 412, 511, 519, 585, 681, 914
AluI AGCT 8 cut(s) 43, 257, 412, 511, 519, 585, 681, 914
Alw21I GWGCWC 2 cut(s) 683, 794
Alw26I GTCTC 1 cut(s) 622
AlwNI CAGNNNCTG 1 cut(s) 848
Aor51HI AGCGCT 1 cut(s) 979
AoxI GGCC 2 cut(s) 18, 143
ApeKI GCWGC 6 cut(s) 58, 98, 332, 422, 737, 1028
Asp700I GAANNNNTTC 1 cut(s) 365
AspLEI GCGC 3 cut(s) 58, 870, 980
AspS9I GGNCC 2 cut(s) 19, 845
AsuHPI GGTGA 1 cut(s) 554
AvaII GGWCC 1 cut(s) 845
BanII GRGCYC 2 cut(s) 12, 683
BbsI GAAGAC 2 cut(s) 651, 825
Bbv12I GWGCWC 2 cut(s) 683, 794
BbvI GCAGC 6 cut(s) 45, 110, 319, 409, 724, 1015
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BciT130I CCWGG 1 cut(s) 843
BcoDI GTCTC 1 cut(s) 622
BfaI CTAG 6 cut(s) 297, 303, 345, 461, 702, 810
BfmI CTRYAG 1 cut(s) 987
BfoI RGCGCY 1 cut(s) 981
BfuAI ACCTGC 2 cut(s) 604, 861
BglI GCCNNNNNGGC 1 cut(s) 470
BglII AGATCT 1 cut(s) 299
BisI GCNGC 7 cut(s) 59, 99, 243, 333, 423, 738, 1029
BlsI GCNGC 7 cut(s) 60, 100, 244, 334, 424, 739, 1030
Bme1390I CCNGG 1 cut(s) 843
Bme18I GGWCC 1 cut(s) 845
BmgT120I GGNCC 2 cut(s) 19, 845
BmrFI CCNGG 1 cut(s) 843
BmrI ACTGGG 2 cut(s) 16, 275
BmsI GCATC 8 cut(s) 158, 328, 535, 661, 724, 824, 855, 1015
BmuI ACTGGG 2 cut(s) 16, 275
BpiI GAAGAC 2 cut(s) 651, 825
BpmI CTGGAG 2 cut(s) 237, 825
BpuEI CTTGAG 1 cut(s) 726
BsaAI YACGTR 1 cut(s) 637
BsaI GGTCTC 1 cut(s) 622
BsaJI CCNNGG 4 cut(s) 215, 291, 417, 465
BsaWI WCCGGW 1 cut(s) 751
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 647
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 3 cut(s) 22, 270, 398
BseBI CCWGG 1 cut(s) 843
BseDI CCNNGG 4 cut(s) 215, 291, 417, 465
BseGI GGATG 4 cut(s) 149, 482, 870, 1030
BseLI CCNNNNNNNGG 2 cut(s) 266, 647
BseMII CTCAG 3 cut(s) 396, 450, 984
BseNI ACTGG 3 cut(s) 22, 270, 398
BseRI GAGGAG 3 cut(s) 98, 232, 1055
BseXI GCAGC 6 cut(s) 45, 110, 319, 409, 724, 1015
BseYI CCCAGC 1 cut(s) 425
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 2 cut(s) 20, 145
BsiHKAI GWGCWC 2 cut(s) 683, 794
BsiSI CCGG 2 cut(s) 95, 752
BslFI GGGAC 2 cut(s) 545, 664
BslI CCNNNNNNNGG 2 cut(s) 266, 647
BsmAI GTCTC 1 cut(s) 622
BsmFI GGGAC 2 cut(s) 545, 664
BsnI GGCC 2 cut(s) 20, 145
Bso31I GGTCTC 1 cut(s) 622
Bsp1286I GDGCHC 3 cut(s) 12, 683, 794
Bsp143I GATC 3 cut(s) 62, 181, 299
BspACI CCGC 3 cut(s) 242, 307, 473
BspANI GGCC 2 cut(s) 20, 145
BspCNI CTCAG 3 cut(s) 395, 449, 983
BspFNI CGCG 1 cut(s) 56
BspMAI CTGCAG 1 cut(s) 991
BspMI ACCTGC 2 cut(s) 604, 861
BspQI GCTCTTC 2 cut(s) 688, 782
BspTNI GGTCTC 1 cut(s) 622
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 3 cut(s) 22, 270, 398
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 4 cut(s) 215, 291, 417, 465
BssMI GATC 3 cut(s) 62, 181, 299
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 843
Bst4CI ACNGT 1 cut(s) 590
Bst6I CTCTTC 4 cut(s) 495, 639, 688, 782
BstAPI GCANNNNNTGC 1 cut(s) 146
BstBAI YACGTR 1 cut(s) 637
BstC8I GCNNGC 2 cut(s) 147, 330
BstDEI CTNAG 5 cut(s) 132, 382, 436, 915, 970
BstF5I GGATG 4 cut(s) 149, 482, 870, 1030
BstFNI CGCG 1 cut(s) 56
BstH2I RGCGCY 1 cut(s) 981
BstHHI GCGC 3 cut(s) 58, 870, 980
BstKTI GATC 3 cut(s) 65, 184, 302
BstMAI GTCTC 1 cut(s) 622
BstMBI GATC 3 cut(s) 62, 181, 299
BstNI CCWGG 1 cut(s) 843
BstSCI CCNGG 1 cut(s) 841
BstSFI CTRYAG 1 cut(s) 987
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 6 cut(s) 45, 110, 319, 409, 724, 1015
BstV2I GAAGAC 2 cut(s) 651, 825
BstX2I RGATCY 1 cut(s) 299
BstYI RGATCY 1 cut(s) 299
BsuRI GGCC 2 cut(s) 20, 145
BtsCI GGATG 4 cut(s) 149, 482, 870, 1030
BtsIMutI CAGTG 3 cut(s) 563, 729, 998
BveI ACCTGC 2 cut(s) 604, 861
Cac8I GCNNGC 2 cut(s) 147, 330
CaiI CAGNNNCTG 1 cut(s) 848
CfoI GCGC 3 cut(s) 58, 870, 980
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 2 cut(s) 19, 845
CseI GACGC 2 cut(s) 111, 117
Csp6I GTAC 1 cut(s) 638
CviQI GTAC 1 cut(s) 638
DdeI CTNAG 5 cut(s) 132, 382, 436, 915, 970
DpnI GATC 3 cut(s) 64, 183, 301
DpnII GATC 3 cut(s) 62, 181, 299
DrdI GACNNNNNNGTC 2 cut(s) 203, 557
DseDI GACNNNNNNGTC 2 cut(s) 203, 557
Eam1104I CTCTTC 4 cut(s) 495, 639, 688, 782
EarI CTCTTC 4 cut(s) 495, 639, 688, 782
Ecl136II GAGCTC 1 cut(s) 681
Eco130I CCWWGG 1 cut(s) 465
Eco147I AGGCCT 1 cut(s) 145
Eco24I GRGCYC 2 cut(s) 12, 683
Eco31I GGTCTC 1 cut(s) 622
Eco47I GGWCC 1 cut(s) 845
Eco47III AGCGCT 1 cut(s) 979
Eco53kI GAGCTC 1 cut(s) 681
Eco57I CTGAAG 2 cut(s) 476, 663
EcoICRI GAGCTC 1 cut(s) 681
EcoO109I RGGNCCY 1 cut(s) 845
EcoRII CCWGG 1 cut(s) 841
EcoT14I CCWWGG 1 cut(s) 465
EcoT38I GRGCYC 2 cut(s) 12, 683
ErhI CCWWGG 1 cut(s) 465
FaiI YATR 4 cut(s) 391, 522, 534, 1066
FaqI GGGAC 2 cut(s) 545, 664
FauI CCCGC 1 cut(s) 466
Fnu4HI GCNGC 7 cut(s) 59, 99, 243, 333, 423, 738, 1029
FokI GGATG 4 cut(s) 136, 489, 877, 1037
FriOI GRGCYC 2 cut(s) 12, 683
Fsp4HI GCNGC 7 cut(s) 59, 99, 243, 333, 423, 738, 1029
FspBI CTAG 6 cut(s) 297, 303, 345, 461, 702, 810
FspI TGCGCA 1 cut(s) 869
GlaI GCGC 3 cut(s) 57, 869, 979
GluI GCNGC 7 cut(s) 59, 99, 243, 333, 423, 738, 1029
GsaI CCCAGC 1 cut(s) 429
GsuI CTGGAG 2 cut(s) 237, 825
HaeII RGCGCY 1 cut(s) 981
HaeIII GGCC 2 cut(s) 20, 145
HapII CCGG 2 cut(s) 95, 752
HgaI GACGC 2 cut(s) 111, 117
HhaI GCGC 3 cut(s) 58, 870, 980
Hin6I GCGC 3 cut(s) 56, 868, 978
HinP1I GCGC 3 cut(s) 56, 868, 978
HincII GTYRAC 1 cut(s) 876
HindII GTYRAC 1 cut(s) 876
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 3 cut(s) 386, 652, 857
HpaII CCGG 2 cut(s) 95, 752
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 1 cut(s) 876
Hpy188I TCNGA 8 cut(s) 261, 292, 360, 385, 418, 622, 664, 856
Hpy8I GTNNAC 1 cut(s) 876
HpyAV CCTTC 2 cut(s) 73, 766
HpyCH4III ACNGT 1 cut(s) 590
HpyCH4IV ACGT 1 cut(s) 636
HpyCH4V TGCA 7 cut(s) 149, 524, 557, 613, 800, 989, 1064
HpyF3I CTNAG 5 cut(s) 132, 382, 436, 915, 970
HpySE526I ACGT 1 cut(s) 636
HspAI GCGC 3 cut(s) 56, 868, 978
Kzo9I GATC 3 cut(s) 62, 181, 299
LguI GCTCTTC 2 cut(s) 688, 782
LmnI GCTCC 1 cut(s) 262
Lsp1109I GCAGC 6 cut(s) 45, 110, 319, 409, 724, 1015
LweI GCATC 8 cut(s) 158, 328, 535, 661, 724, 824, 855, 1015
MaeI CTAG 6 cut(s) 297, 303, 345, 461, 702, 810
MaeII ACGT 1 cut(s) 636
MaeIII GTNAC 1 cut(s) 67
MalI GATC 3 cut(s) 64, 183, 301
MboI GATC 3 cut(s) 62, 181, 299
MflI RGATCY 1 cut(s) 299
MhlI GDGCHC 3 cut(s) 12, 683, 794
MluCI AATT 1 cut(s) 104
MlyI GAGTC 3 cut(s) 395, 646, 851
MmeI TCCRAC 2 cut(s) 135, 338
MroXI GAANNNNTTC 1 cut(s) 365
MseI TTAA 2 cut(s) 408, 903
MspI CCGG 2 cut(s) 95, 752
MspR9I CCNGG 1 cut(s) 843
MvaI CCWGG 1 cut(s) 843
MvnI CGCG 1 cut(s) 56
NdeII GATC 3 cut(s) 62, 181, 299
NmuCI GTSAC 1 cut(s) 67
NsbI TGCGCA 1 cut(s) 869
PceI AGGCCT 1 cut(s) 145
PciSI GCTCTTC 2 cut(s) 688, 782
PdmI GAANNNNTTC 1 cut(s) 365
PflFI GACNNNGTC 1 cut(s) 655
PfoI TCCNGGA 1 cut(s) 841
PkrI GCNGC 7 cut(s) 60, 100, 244, 334, 424, 739, 1030
PleI GAGTC 3 cut(s) 394, 646, 851
PpsI GAGTC 3 cut(s) 394, 646, 851
Ppu21I YACGTR 1 cut(s) 637
PpuMI RGGWCCY 1 cut(s) 845
Psp124BI GAGCTC 1 cut(s) 683
Psp5II RGGWCCY 1 cut(s) 845
Psp6I CCWGG 1 cut(s) 841
PspFI CCCAGC 1 cut(s) 425
PspGI CCWGG 1 cut(s) 841
PspPI GGNCC 2 cut(s) 19, 845
PspPPI RGGWCCY 1 cut(s) 845
PstI CTGCAG 1 cut(s) 991
PstNI CAGNNNCTG 1 cut(s) 848
PsuI RGATCY 1 cut(s) 299
PsyI GACNNNGTC 1 cut(s) 655
RsaI GTAC 1 cut(s) 639
RsaNI GTAC 1 cut(s) 638
SacI GAGCTC 1 cut(s) 683
SapI GCTCTTC 2 cut(s) 688, 782
SaqAI TTAA 2 cut(s) 408, 903
SatI GCNGC 7 cut(s) 59, 99, 243, 333, 423, 738, 1029
Sau3AI GATC 3 cut(s) 62, 181, 299
Sau96I GGNCC 2 cut(s) 19, 845
SchI GAGTC 3 cut(s) 395, 646, 851
ScrFI CCNGG 1 cut(s) 843
SduI GDGCHC 3 cut(s) 12, 683, 794
SfaNI GCATC 8 cut(s) 158, 328, 535, 661, 724, 824, 855, 1015
SfcI CTRYAG 1 cut(s) 987
SinI GGWCC 1 cut(s) 845
SmlI CTYRAG 1 cut(s) 741
SmoI CTYRAG 1 cut(s) 741
Sse9I AATT 1 cut(s) 104
SseBI AGGCCT 1 cut(s) 145
SsiI CCGC 3 cut(s) 242, 307, 473
SspMI CTAG 6 cut(s) 297, 303, 345, 461, 702, 810
SstI GAGCTC 1 cut(s) 683
StuI AGGCCT 1 cut(s) 145
StyD4I CCNGG 1 cut(s) 841
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 1 cut(s) 590
TaiI ACGT 1 cut(s) 639
TaqII GACCGA 1 cut(s) 645
TasI AATT 1 cut(s) 104
TauI GCSGC 1 cut(s) 245
Tru1I TTAA 2 cut(s) 408, 903
Tru9I TTAA 2 cut(s) 408, 903
TscAI CASTG 3 cut(s) 570, 736, 1005
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 6 cut(s) 58, 98, 332, 422, 737, 1028
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 3 cut(s) 675, 681, 936
TspRI CASTG 3 cut(s) 570, 736, 1005
Tth111I GACNNNGTC 1 cut(s) 655
VpaK11BI GGWCC 1 cut(s) 845
XmnI GAANNNNTTC 1 cut(s) 365
XspI CTAG 6 cut(s) 297, 303, 345, 461, 702, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.