Rorug06G0435800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011434
Physical Location & Seq
Reverse (-)
57022274 .. 57023488
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0435800.1

Sequence Viewer

Length: 975 bp
ATGCTTCCTCATACCACTCTCCACTGTACTTCTCTCTACACTCATAGCTTCAAGTTCCCTCTTAGCTTCAGATCAATGGCGACCATCACAAATTTCGTAGCCAAACCACCTTTATCTCTATCTTCAATCCCCAAAGCCAGCTCTCTTTACCACCACCGGTCCTTCTTATCCTCAGTCACCAAACTCAAACCTCTAGCAACAAAACTAGAAGCCAAACAAGCCCGCTTCAACTTCACCACAAAGGCCACGGCCGCCCCGGGCACTAAGAAAGTGGGGAGCGATGAGAGAGTAGTACGAGTCCACAGCATAGCGGAATTCGATGAAGCGCTTCAATCGGCAAAGAACAAGCTTGTGGTGGTCGAATTCGCCACCAGCCACAGCTCCGAGAGCAAGAAAATGTACCCCTTCATGGTTGATCTCAGCCGCACGTGTGGCGACGTGGAGTTCTTACTGGTGATGGGAGACGAAAACGAGAAGACCAGGGAGCTATGCAGGAGAGAAAAGATCGAGAAGGTTCCGCACTTCAGCTTCTACAAGAGCATGGAGAAGATTCACGAGGAGGAAGGCATAGACGGCAACCAGCTTGTCGGAGATGTGTTATATTACGGCGACAGCCATTCGGCGGTGGTGCAGTTACATAACCGAGAGGACGTTGAGAAGTTGATTCAAGATCACAAGGTTGACCATAAGCTGATTGTGCTTGACGTGGGGCTCAAGCATTGTGGGCCGTGCGTGAAGGTGTATCCGACGGTGGTTAAGCTGTCGAAGAGGATGGAGGATACGGTGGTGTTTGCGAGAATGAACGGCGATGAGAACGACAGCTGTCTGCAGTTCCTCAAGGACATGGAGGTGGTGGAGGTGCCGACGTTCTTGTTCATTAGGGATGGTGAGATCTGCGGAAGGTACGTGGGTTCTGGGAAGGGTGAGCTCATTGGTGAGATTCTGAGATACCAAGGAGTACGTGTCACTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

324

Amino Acids

36.61

Weight (kDa)

8.08

Isoelectric Point (pI)

32.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 99 - 191 8.6e-08 Thioredoxin
Thioredoxin PF00085 215 - 309 1.1e-11 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62550
fragaria_vesca FvH4_5g15300 FvH4_5g15300 FvH4_5g15300
malus_domestica MD01G1041800.v1.1 MD06G1189400.v1.1 MD14G1196400.v1.1
prunus_persica Prupe.5G188200_v2.0.a1
pyrus_communis pycom06g16830 pycom14g16310
rosa_chinensis RchiOBHm_Chr7g0180761
rosa_laevigata RLG00000005232
rosa_multiflora Rmu_sc0007457.1_g000012
rosa_roxburghii Rroxscaffold_3G00272560
rosa_rugosa Rorug06G0435800
rosa_samantha Rh7AG037500 Rh7BG037200 Rh7CG038900 Rh7DG037400
rosa_wichuraiana Rw7G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 859
AciI CCGC 7 cut(s) 223, 252, 311, 424, 518, 623, 897
AcoI YGGCCR 1 cut(s) 249
AcsI RAATTY 3 cut(s) 91, 314, 362
AcuI CTGAAG 2 cut(s) 52, 508
AcvI CACGTG 1 cut(s) 429
AfaI GTAC 5 cut(s) 28, 294, 401, 905, 960
AfeI AGCGCT 1 cut(s) 327
AfiI CCNNNNNNNGG 2 cut(s) 409, 622
AflIII ACRYGT 2 cut(s) 428, 961
AgeI ACCGGT 1 cut(s) 156
AgsI TTSAA 5 cut(s) 52, 126, 229, 332, 668
AjiI CACGTC 2 cut(s) 439, 706
AjnI CCWGG 1 cut(s) 479
Alw21I GWGCWC 1 cut(s) 930
Alw26I GTCTC 1 cut(s) 456
Ama87I CYCGRG 1 cut(s) 256
Aor51HI AGCGCT 1 cut(s) 327
AoxI GGCC 3 cut(s) 243, 249, 725
ApoI RAATTY 3 cut(s) 91, 314, 362
AsiGI ACCGGT 1 cut(s) 156
Asp700I GAANNNNTTC 1 cut(s) 327
AspLEI GCGC 1 cut(s) 328
AspS9I GGNCC 2 cut(s) 159, 725
AsuC2I CCSGG 2 cut(s) 257, 258
AsuHPI GGTGA 6 cut(s) 169, 226, 466, 899, 935, 947
AvaI CYCGRG 1 cut(s) 256
AvaII GGWCC 1 cut(s) 159
BaeGI GKGCMC 1 cut(s) 263
BaeI ACNNNNGTAYC 4 cut(s) 771, 804, 895, 928
BanI GGYRCC 1 cut(s) 859
BanII GRGCYC 2 cut(s) 714, 930
BauI CACGAG 1 cut(s) 554
BbrPI CACGTG 1 cut(s) 429
BbsI GAAGAC 1 cut(s) 482
Bbv12I GWGCWC 1 cut(s) 930
BccI CCATC 4 cut(s) 92, 451, 766, 878
BceAI ACGGC 5 cut(s) 264, 589, 622, 712, 820
BciT130I CCWGG 1 cut(s) 481
BciVI GTATCC 2 cut(s) 753, 772
BcnI CCSGG 2 cut(s) 257, 258
BcoDI GTCTC 1 cut(s) 456
BfaI CTAG 2 cut(s) 194, 206
BfmI CTRYAG 1 cut(s) 827
BfoI RGCGCY 1 cut(s) 329
BfuI GTATCC 2 cut(s) 753, 772
BglII AGATCT 1 cut(s) 891
BisI GCNGC 2 cut(s) 252, 424
BlsI GCNGC 2 cut(s) 253, 425
Bme1390I CCNGG 3 cut(s) 257, 258, 481
Bme18I GGWCC 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 256
BmgBI CACGTC 2 cut(s) 439, 706
BmgT120I GGNCC 2 cut(s) 159, 725
BmiI GGNNCC 2 cut(s) 516, 861
BmrFI CCNGG 3 cut(s) 257, 258, 481
BoxI GACNNNNGTC 1 cut(s) 822
BpiI GAAGAC 1 cut(s) 482
BpuEI CTTGAG 2 cut(s) 698, 821
BpuMI CCSGG 2 cut(s) 257, 258
BsaAI YACGTR 3 cut(s) 429, 907, 962
BsaJI CCNNGG 5 cut(s) 246, 255, 256, 480, 952
BsaWI WCCGGW 1 cut(s) 156
BsaXI ACNNNNNCTCC 1 cut(s) 948
Bsc4I CCNNNNNNNGG 2 cut(s) 409, 622
Bse118I RCCGGY 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 456
BseBI CCWGG 1 cut(s) 481
BseDI CCNNGG 5 cut(s) 246, 255, 256, 480, 952
BseGI GGATG 2 cut(s) 777, 889
BseLI CCNNNNNNNGG 2 cut(s) 409, 622
BseMII CTCAG 3 cut(s) 186, 433, 935
BseNI ACTGG 1 cut(s) 456
BseRI GAGGAG 1 cut(s) 572
BseSI GKGCMC 1 cut(s) 263
BseX3I CGGCCG 1 cut(s) 249
BsgI GTGCAG 1 cut(s) 650
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 3 cut(s) 245, 251, 727
BshNI GGYRCC 1 cut(s) 859
BshTI ACCGGT 1 cut(s) 156
BsiEI CGRYCG 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 930
BsiHKCI CYCGRG 1 cut(s) 256
BsiSI CCGG 2 cut(s) 157, 257
BslI CCNNNNNNNGG 2 cut(s) 409, 622
BsmAI GTCTC 1 cut(s) 456
BsmBI CGTCTC 1 cut(s) 456
BsnI GGCC 3 cut(s) 245, 251, 727
BsoBI CYCGRG 1 cut(s) 256
Bsp1286I GDGCHC 3 cut(s) 263, 714, 930
Bsp143I GATC 5 cut(s) 71, 415, 504, 670, 891
BspACI CCGC 7 cut(s) 223, 252, 311, 424, 518, 623, 897
BspANI GGCC 3 cut(s) 245, 251, 727
BspCNI CTCAG 3 cut(s) 185, 432, 936
BspLI GGNNCC 2 cut(s) 516, 861
BspMAI CTGCAG 1 cut(s) 831
BspT107I GGYRCC 1 cut(s) 859
BsrFI RCCGGY 1 cut(s) 156
BsrI ACTGG 1 cut(s) 456
BssAI RCCGGY 1 cut(s) 156
BssECI CCNNGG 5 cut(s) 246, 255, 256, 480, 952
BssMI GATC 5 cut(s) 71, 415, 504, 670, 891
BssSI CACGAG 1 cut(s) 554
BssT1I CCWWGG 1 cut(s) 952
Bst2BI CACGAG 1 cut(s) 554
Bst2UI CCWGG 1 cut(s) 481
Bst4CI ACNGT 3 cut(s) 26, 751, 784
Bst6I CTCTTC 1 cut(s) 761
BstBAI YACGTR 3 cut(s) 429, 907, 962
BstC8I GCNNGC 2 cut(s) 139, 223
BstDEI CTNAG 5 cut(s) 62, 172, 264, 419, 944
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 2 cut(s) 777, 889
BstH2I RGCGCY 1 cut(s) 329
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 5 cut(s) 74, 418, 507, 673, 894
BstMAI GTCTC 1 cut(s) 456
BstMBI GATC 5 cut(s) 71, 415, 504, 670, 891
BstMCI CGRYCG 1 cut(s) 252
BstMWI GCNNNNNNNGC 7 cut(s) 218, 251, 387, 432, 573, 697, 724
BstNI CCWGG 1 cut(s) 481
BstPAI GACNNNNGTC 1 cut(s) 822
BstSCI CCNGG 3 cut(s) 255, 256, 479
BstSFI CTRYAG 1 cut(s) 827
BstSLI GKGCMC 1 cut(s) 263
BstV2I GAAGAC 1 cut(s) 482
BstX2I RGATCY 1 cut(s) 891
BstYI RGATCY 1 cut(s) 891
BstZI CGGCCG 1 cut(s) 249
BsuI GTATCC 2 cut(s) 753, 772
BsuRI GGCC 3 cut(s) 245, 251, 727
BtgI CCRYGG 1 cut(s) 246
BtgZI GCGATG 2 cut(s) 294, 822
BtrI CACGTC 2 cut(s) 439, 706
BtsCI GGATG 2 cut(s) 777, 889
BtsIMutI CAGTG 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 139, 223
CfoI GCGC 1 cut(s) 328
Cfr10I RCCGGY 1 cut(s) 156
Cfr13I GGNCC 2 cut(s) 159, 725
Cfr9I CCCGGG 1 cut(s) 256
Csp6I GTAC 5 cut(s) 27, 293, 400, 904, 959
CspAI ACCGGT 1 cut(s) 156
CspCI CAANNNNNGTGG 2 cut(s) 703, 738
CviAII CATG 3 cut(s) 409, 541, 844
CviQI GTAC 5 cut(s) 27, 293, 400, 904, 959
DdeI CTNAG 5 cut(s) 62, 172, 264, 419, 944
DpnI GATC 5 cut(s) 73, 417, 506, 672, 893
DpnII GATC 5 cut(s) 71, 415, 504, 670, 891
EaeI YGGCCR 1 cut(s) 249
EagI CGGCCG 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 761
EarI CTCTTC 1 cut(s) 761
Ecl136II GAGCTC 1 cut(s) 928
EclXI CGGCCG 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 952
Eco24I GRGCYC 2 cut(s) 714, 930
Eco47I GGWCC 1 cut(s) 159
Eco47III AGCGCT 1 cut(s) 327
Eco52I CGGCCG 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 928
Eco57I CTGAAG 2 cut(s) 52, 508
Eco72I CACGTG 1 cut(s) 429
Eco88I CYCGRG 1 cut(s) 256
EcoICRI GAGCTC 1 cut(s) 928
EcoRI GAATTC 2 cut(s) 314, 362
EcoRII CCWGG 1 cut(s) 479
EcoT14I CCWWGG 1 cut(s) 952
EcoT38I GRGCYC 2 cut(s) 714, 930
ErhI CCWWGG 1 cut(s) 952
Esp3I CGTCTC 1 cut(s) 456
FaeI CATG 3 cut(s) 412, 544, 847
FatI CATG 3 cut(s) 408, 540, 843
FauI CCCGC 1 cut(s) 230
Fnu4HI GCNGC 2 cut(s) 252, 424
FokI GGATG 2 cut(s) 784, 896
FriOI GRGCYC 2 cut(s) 714, 930
Fsp4HI GCNGC 2 cut(s) 252, 424
FspBI CTAG 2 cut(s) 194, 206
GlaI GCGC 1 cut(s) 327
GluI GCNGC 2 cut(s) 252, 424
HaeII RGCGCY 1 cut(s) 329
HaeIII GGCC 3 cut(s) 245, 251, 727
HapII CCGG 2 cut(s) 157, 257
HhaI GCGC 1 cut(s) 328
Hin1II CATG 3 cut(s) 412, 544, 847
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HincII GTYRAC 1 cut(s) 682
HindII GTYRAC 1 cut(s) 682
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 4 cut(s) 297, 550, 664, 940
HpaII CCGG 2 cut(s) 157, 257
HphI GGTGA 6 cut(s) 169, 226, 466, 899, 935, 947
Hpy166II GTNNAC 2 cut(s) 301, 682
Hpy188I TCNGA 5 cut(s) 71, 385, 590, 747, 945
Hpy188III TCNNGA 3 cut(s) 508, 554, 668
Hpy8I GTNNAC 2 cut(s) 301, 682
Hpy99I CGWCG 3 cut(s) 440, 751, 868
HpyAV CCTTC 7 cut(s) 172, 415, 505, 557, 730, 894, 913
HpyCH4III ACNGT 3 cut(s) 26, 751, 784
HpyCH4IV ACGT 7 cut(s) 428, 438, 651, 705, 866, 906, 961
HpyCH4V TGCA 3 cut(s) 492, 631, 829
HpyF10VI GCNNNNNNNGC 7 cut(s) 218, 251, 387, 432, 573, 697, 724
HpyF3I CTNAG 5 cut(s) 62, 172, 264, 419, 944
HpySE526I ACGT 7 cut(s) 428, 438, 651, 705, 866, 906, 961
Hsp92II CATG 3 cut(s) 412, 544, 847
HspAI GCGC 1 cut(s) 326
Kzo9I GATC 5 cut(s) 71, 415, 504, 670, 891
LmnI GCTCC 3 cut(s) 276, 386, 484
MaeI CTAG 2 cut(s) 194, 206
MaeII ACGT 7 cut(s) 428, 438, 651, 705, 866, 906, 961
MaeIII GTNAC 3 cut(s) 175, 633, 964
MalI GATC 5 cut(s) 73, 417, 506, 672, 893
MboI GATC 5 cut(s) 71, 415, 504, 670, 891
MboII GAAGA 4 cut(s) 114, 487, 559, 778
MflI RGATCY 1 cut(s) 891
MhlI GDGCHC 3 cut(s) 263, 714, 930
MluCI AATT 3 cut(s) 91, 314, 362
MlyI GAGTC 1 cut(s) 306
MmeI TCCRAC 2 cut(s) 568, 770
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 1 cut(s) 756
MslI CAYNNNNRTG 1 cut(s) 848
MspA1I CMGCKG 1 cut(s) 822
MspI CCGG 2 cut(s) 157, 257
MspR9I CCNGG 3 cut(s) 257, 258, 481
MvaI CCWGG 1 cut(s) 481
MwoI GCNNNNNNNGC 7 cut(s) 218, 251, 387, 432, 573, 697, 724
NciI CCSGG 2 cut(s) 257, 258
NdeII GATC 5 cut(s) 71, 415, 504, 670, 891
NlaIII CATG 3 cut(s) 412, 544, 847
NlaIV GGNNCC 2 cut(s) 516, 861
NmuCI GTSAC 2 cut(s) 175, 964
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 3 cut(s) 550, 664, 940
PinAI ACCGGT 1 cut(s) 156
PkrI GCNGC 2 cut(s) 253, 425
PleI GAGTC 1 cut(s) 305
PmaCI CACGTG 1 cut(s) 429
PmlI CACGTG 1 cut(s) 429
PpsI GAGTC 1 cut(s) 305
Ppu21I YACGTR 3 cut(s) 429, 907, 962
PshAI GACNNNNGTC 1 cut(s) 822
Psp124BI GAGCTC 1 cut(s) 930
Psp6I CCWGG 1 cut(s) 479
PspCI CACGTG 1 cut(s) 429
PspGI CCWGG 1 cut(s) 479
PspN4I GGNNCC 2 cut(s) 516, 861
PspPI GGNCC 2 cut(s) 159, 725
PstI CTGCAG 1 cut(s) 831
PsuI RGATCY 1 cut(s) 891
PvuII CAGCTG 1 cut(s) 822
RsaI GTAC 5 cut(s) 28, 294, 401, 905, 960
RsaNI GTAC 5 cut(s) 27, 293, 400, 904, 959
RseI CAYNNNNRTG 1 cut(s) 848
SacI GAGCTC 1 cut(s) 930
SaqAI TTAA 1 cut(s) 756
SatI GCNGC 2 cut(s) 252, 424
Sau3AI GATC 5 cut(s) 71, 415, 504, 670, 891
Sau96I GGNCC 2 cut(s) 159, 725
SchI GAGTC 1 cut(s) 306
ScrFI CCNGG 3 cut(s) 257, 258, 481
SduI GDGCHC 3 cut(s) 263, 714, 930
SfcI CTRYAG 1 cut(s) 827
SinI GGWCC 1 cut(s) 159
SmaI CCCGGG 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 848
SmlI CTYRAG 2 cut(s) 713, 836
SmoI CTYRAG 2 cut(s) 713, 836
Sse9I AATT 3 cut(s) 91, 314, 362
SsiI CCGC 7 cut(s) 223, 252, 311, 424, 518, 623, 897
SspMI CTAG 2 cut(s) 194, 206
SstI GAGCTC 1 cut(s) 930
StyD4I CCNGG 3 cut(s) 255, 256, 479
StyI CCWWGG 1 cut(s) 952
TaaI ACNGT 3 cut(s) 26, 751, 784
TaiI ACGT 7 cut(s) 431, 441, 654, 708, 869, 909, 964
TaqI TCGA 4 cut(s) 318, 360, 507, 764
TasI AATT 3 cut(s) 91, 314, 362
TatI WGTACW 1 cut(s) 26
TauI GCSGC 2 cut(s) 254, 426
TfiI GAWTC 3 cut(s) 550, 664, 940
Tru1I TTAA 1 cut(s) 756
Tru9I TTAA 1 cut(s) 756
TscAI CASTG 1 cut(s) 29
TseFI GTSAC 2 cut(s) 175, 964
Tsp45I GTSAC 2 cut(s) 175, 964
TspDTI ATGAA 4 cut(s) 336, 397, 815, 865
TspMI CCCGGG 1 cut(s) 256
TspRI CASTG 1 cut(s) 29
VpaK11BI GGWCC 1 cut(s) 159
XapI RAATTY 3 cut(s) 91, 314, 362
XmaI CCCGGG 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 2 cut(s) 194, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.