pycom06g16830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0011434
Physical Location & Seq
Reverse (-)
20954424 .. 20956449
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g16830.6

Sequence Viewer

Length: 1059 bp
ATGGAGGAACCCCAATCTGCTCAATCTGCCCAATCTGGGAAGCTTCTTCGGTATGCGCTTCGTTCGGGGTCTAAAACGAAGGAGGAGAAGCTGCCGGCTGCGGCCGTTGAACCCTCTAACAATTCTGCCACCAAGAGGGGAAGGCCTGCATCAAATATGAGTAAAAGTGTGGGAGTTCTTGATCTCTCTGGCAAGGACAAGCCTGCCAAGCCGGCCAGAAGGCTCTCTGTTCCTTCCAAGCCGCCCACTACTCCAGCGCCGAAACTTGGTGGCAACATCACTCCAATTTCTGAGGCTAGATCAAGGAGGTCTGTGAGAAGTGAATCCCCTGCTTCTTCTGATGTTTCTAGACCGACAAGCAGGAAGAAGTTCAATGTTCTGGCCTCACCATCTTACTGGCTGCAGCAAATTAAGCTTTCTGAGGCTGCTGCCAAGCACTCGATTTCACTCGGGTTTTTCAAACTAGCCTTGGAGGCTGGATGTGAGTCTCTTCAACTGCGCCATGAGCTAAAATCTTACGTTGATCGCAACGAGCTTAGTGACCTTGAAGACCCTCTGAAGGAATTACTGGAGAGCAAAACTGTTGTAGTAAATGAGCAGGCTCAGGTTTCTGAAACCTGTTCTCAGGTGCTCGACGAGGGGAATCGATCTTCTGATGATGATGCCAAGAGCTGCTCTTCTACAATGGGAAGTGGGAAACTGAAACCCAAGTCATTGAACACTGAAGCTGCTCAAGTTTCTCCCGTGAAGGCCGCAGCCAAGAAGGAGATTGCCCCAAAAAGCACTCCTGCAGCCAGGACTAGGGCATCTTCAGCAAAGAGTTCTTCGAATTCAGGACCTATATGTGACAATGGTGCTCGCGTATCTACTGTTAAGAAACCCCAGAAGCCGAGTGTGCAAGATTCTAACAAAGTAAAGGACAGGAAGAAGAAGCAGGGGAATCAAACTGCTTGTGAACAAGACTCAGTTAACCCTACTCGTGCAGAAGAAGCACTTCAGGAGAACAAAGAAAATCAGGATGCTCCCTCGACGGAAGCTATCAATGTGACTGAAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

353

Amino Acids

37.65

Weight (kDa)

9.53

Isoelectric Point (pI)

64.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62550
fragaria_vesca FvH4_5g15300 FvH4_5g15300 FvH4_5g15300
malus_domestica MD01G1041800.v1.1 MD06G1189400.v1.1 MD14G1196400.v1.1
prunus_persica Prupe.5G188200_v2.0.a1
pyrus_communis pycom06g16830 pycom14g16310
rosa_chinensis RchiOBHm_Chr7g0180761
rosa_laevigata RLG00000005232
rosa_multiflora Rmu_sc0007457.1_g000012
rosa_roxburghii Rroxscaffold_3G00272560
rosa_rugosa Rorug06G0435800
rosa_samantha Rh7AG037500 Rh7BG037200 Rh7CG038900 Rh7DG037400
rosa_wichuraiana Rw7G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 861
AciI CCGC 3 cut(s) 101, 242, 753
AcoI YGGCCR 2 cut(s) 102, 213
AcsI RAATTY 1 cut(s) 829
AcuI CTGAAG 4 cut(s) 578, 744, 795, 980
AfiI CCNNNNNNNGG 5 cut(s) 36, 135, 266, 559, 801
AgsI TTSAA 6 cut(s) 110, 373, 460, 494, 548, 718
AjnI CCWGG 1 cut(s) 794
AluBI AGCT 8 cut(s) 43, 91, 415, 508, 535, 672, 728, 1037
AluI AGCT 8 cut(s) 43, 91, 415, 508, 535, 672, 728, 1037
Alw21I GWGCWC 2 cut(s) 633, 859
Alw26I GTCTC 1 cut(s) 492
Ama87I CYCGRG 1 cut(s) 449
AoxI GGCC 5 cut(s) 102, 143, 213, 381, 750
ApoI RAATTY 1 cut(s) 829
Asp700I GAANNNNTTC 2 cut(s) 368, 993
AspLEI GCGC 3 cut(s) 58, 259, 501
AspS9I GGNCC 1 cut(s) 836
AsuHPI GGTGA 1 cut(s) 378
AsuII TTCGAA 1 cut(s) 827
AvaI CYCGRG 1 cut(s) 449
AvaII GGWCC 1 cut(s) 836
BauI CACGAG 1 cut(s) 978
BbsI GAAGAC 1 cut(s) 555
Bbv12I GWGCWC 2 cut(s) 633, 859
BccI CCATC 1 cut(s) 397
BceAI ACGGC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 796
BcoDI GTCTC 1 cut(s) 492
BfaI CTAG 4 cut(s) 297, 348, 464, 801
BfmI CTRYAG 2 cut(s) 401, 789
BfoI RGCGCY 1 cut(s) 260
BglI GCCNNNNNGGC 2 cut(s) 212, 473
Bme1390I CCNGG 1 cut(s) 796
Bme18I GGWCC 1 cut(s) 836
BmeT110I CYCGRG 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 836
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 796
BmsI GCATC 4 cut(s) 158, 652, 815, 1009
BpiI GAAGAC 1 cut(s) 555
BpmI CTGGAG 2 cut(s) 237, 590
Bpu10I CCTNAGC 1 cut(s) 603
Bpu14I TTCGAA 1 cut(s) 827
BpuEI CTTGAG 1 cut(s) 717
Bsa29I ATCGAT 1 cut(s) 646
BsaJI CCNNGG 1 cut(s) 468
Bsc4I CCNNNNNNNGG 5 cut(s) 36, 135, 266, 559, 801
Bse118I RCCGGY 2 cut(s) 94, 211
Bse1I ACTGG 2 cut(s) 401, 573
BseBI CCWGG 1 cut(s) 796
BseCI ATCGAT 1 cut(s) 646
BseDI CCNNGG 1 cut(s) 468
BseGI GGATG 2 cut(s) 485, 1024
BseLI CCNNNNNNNGG 5 cut(s) 36, 135, 266, 559, 801
BseMII CTCAG 5 cut(s) 282, 411, 617, 638, 978
BseNI ACTGG 2 cut(s) 401, 573
BseRI GAGGAG 1 cut(s) 98
BseX3I CGGCCG 1 cut(s) 102
BsgI GTGCAG 1 cut(s) 1002
Bsh1236I CGCG 1 cut(s) 861
Bsh1285I CGRYCG 1 cut(s) 105
BshFI GGCC 5 cut(s) 104, 145, 215, 383, 752
BshVI ATCGAT 1 cut(s) 646
BsiEI CGRYCG 1 cut(s) 105
BsiHKAI GWGCWC 2 cut(s) 633, 859
BsiHKCI CYCGRG 1 cut(s) 449
BsiSI CCGG 2 cut(s) 95, 212
BslI CCNNNNNNNGG 5 cut(s) 36, 135, 266, 559, 801
BsmAI GTCTC 1 cut(s) 492
BsnI GGCC 5 cut(s) 104, 145, 215, 383, 752
BsoBI CYCGRG 1 cut(s) 449
Bsp119I TTCGAA 1 cut(s) 827
Bsp1286I GDGCHC 2 cut(s) 633, 859
Bsp143I GATC 4 cut(s) 181, 299, 523, 647
BspACI CCGC 3 cut(s) 101, 242, 753
BspANI GGCC 5 cut(s) 104, 145, 215, 383, 752
BspCNI CTCAG 5 cut(s) 283, 412, 616, 637, 977
BspDI ATCGAT 1 cut(s) 646
BspFNI CGCG 1 cut(s) 861
BspLI GGNNCC 1 cut(s) 9
BspMAI CTGCAG 2 cut(s) 405, 793
BspQI GCTCTTC 1 cut(s) 682
BspT104I TTCGAA 1 cut(s) 827
BsrFI RCCGGY 2 cut(s) 94, 211
BsrI ACTGG 2 cut(s) 401, 573
BssAI RCCGGY 2 cut(s) 94, 211
BssECI CCNNGG 1 cut(s) 468
BssMI GATC 4 cut(s) 181, 299, 523, 647
BssSI CACGAG 1 cut(s) 978
BssT1I CCWWGG 1 cut(s) 468
Bst2BI CACGAG 1 cut(s) 978
Bst2UI CCWGG 1 cut(s) 796
Bst4CI ACNGT 2 cut(s) 583, 871
Bst6I CTCTTC 2 cut(s) 495, 682
BstBI TTCGAA 1 cut(s) 827
BstC8I GCNNGC 6 cut(s) 96, 147, 204, 213, 600, 859
BstDEI CTNAG 6 cut(s) 291, 420, 536, 603, 624, 964
BstF5I GGATG 2 cut(s) 485, 1024
BstFNI CGCG 1 cut(s) 861
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 3 cut(s) 58, 259, 501
BstKTI GATC 4 cut(s) 184, 302, 526, 650
BstMAI GTCTC 1 cut(s) 492
BstMBI GATC 4 cut(s) 181, 299, 523, 647
BstMCI CGRYCG 1 cut(s) 105
BstMWI GCNNNNNNNGC 9 cut(s) 26, 208, 212, 412, 473, 505, 812, 895, 989
BstNI CCWGG 1 cut(s) 796
BstSCI CCNGG 1 cut(s) 794
BstSFI CTRYAG 2 cut(s) 401, 789
BstUI CGCG 1 cut(s) 861
BstV2I GAAGAC 1 cut(s) 555
BstXI CCANNNNNNTGG 1 cut(s) 396
BstZI CGGCCG 1 cut(s) 102
Bsu15I ATCGAT 1 cut(s) 646
BsuRI GGCC 5 cut(s) 104, 145, 215, 383, 752
BsuTUI ATCGAT 1 cut(s) 646
BtsCI GGATG 2 cut(s) 485, 1024
BtsIMutI CAGTG 1 cut(s) 720
Cac8I GCNNGC 6 cut(s) 96, 147, 204, 213, 600, 859
CfoI GCGC 3 cut(s) 58, 259, 501
Cfr10I RCCGGY 2 cut(s) 94, 211
Cfr13I GGNCC 1 cut(s) 836
ClaI ATCGAT 1 cut(s) 646
CviAII CATG 1 cut(s) 503
DdeI CTNAG 6 cut(s) 291, 420, 536, 603, 624, 964
DpnI GATC 4 cut(s) 183, 301, 525, 649
DpnII GATC 4 cut(s) 181, 299, 523, 647
EaeI YGGCCR 2 cut(s) 102, 213
EagI CGGCCG 1 cut(s) 102
Eam1104I CTCTTC 2 cut(s) 495, 682
EarI CTCTTC 2 cut(s) 495, 682
EclXI CGGCCG 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 468
Eco147I AGGCCT 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 836
Eco52I CGGCCG 1 cut(s) 102
Eco57I CTGAAG 4 cut(s) 578, 744, 795, 980
Eco88I CYCGRG 1 cut(s) 449
EcoO109I RGGNCCY 1 cut(s) 836
EcoRI GAATTC 1 cut(s) 829
EcoRII CCWGG 1 cut(s) 794
EcoT14I CCWWGG 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 1 cut(s) 506
FaiI YATR 5 cut(s) 54, 158, 504, 842, 844
FalI AAGNNNNNCTT 2 cut(s) 978, 1010
FatI CATG 1 cut(s) 502
FokI GGATG 2 cut(s) 492, 1031
FspBI CTAG 4 cut(s) 297, 348, 464, 801
GlaI GCGC 3 cut(s) 57, 258, 500
GsuI CTGGAG 2 cut(s) 237, 590
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 5 cut(s) 104, 145, 215, 383, 752
HapII CCGG 2 cut(s) 95, 212
HhaI GCGC 3 cut(s) 58, 259, 501
Hin1II CATG 1 cut(s) 506
Hin6I GCGC 3 cut(s) 56, 257, 499
HinP1I GCGC 3 cut(s) 56, 257, 499
HincII GTYRAC 1 cut(s) 970
HindII GTYRAC 1 cut(s) 970
HindIII AAGCTT 2 cut(s) 41, 413
HinfI GANTC 6 cut(s) 323, 485, 643, 902, 940, 962
HpaI GTTAAC 1 cut(s) 970
HpaII CCGG 2 cut(s) 95, 212
HphI GGTGA 1 cut(s) 378
Hpy166II GTNNAC 2 cut(s) 956, 970
Hpy188I TCNGA 6 cut(s) 292, 340, 421, 558, 613, 655
Hpy188III TCNNGA 5 cut(s) 179, 348, 834, 998, 1016
Hpy8I GTNNAC 2 cut(s) 956, 970
Hpy99I CGWCG 2 cut(s) 638, 1033
HpyAV CCTTC 7 cut(s) 73, 135, 213, 243, 553, 742, 757
HpyCH4III ACNGT 2 cut(s) 583, 871
HpyCH4IV ACGT 1 cut(s) 519
HpyCH4V TGCA 5 cut(s) 149, 403, 791, 898, 983
HpyF10VI GCNNNNNNNGC 9 cut(s) 26, 208, 212, 412, 473, 505, 812, 895, 989
HpyF3I CTNAG 6 cut(s) 291, 420, 536, 603, 624, 964
HpySE526I ACGT 1 cut(s) 519
Hsp92II CATG 1 cut(s) 506
HspAI GCGC 3 cut(s) 56, 257, 499
KroI GCCGGC 2 cut(s) 94, 211
KroNI GCCGGC 2 cut(s) 96, 213
KspAI GTTAAC 1 cut(s) 970
Kzo9I GATC 4 cut(s) 181, 299, 523, 647
LguI GCTCTTC 1 cut(s) 682
LmnI GCTCC 1 cut(s) 1027
LweI GCATC 4 cut(s) 158, 652, 815, 1009
MaeI CTAG 4 cut(s) 297, 348, 464, 801
MaeII ACGT 1 cut(s) 519
MaeIII GTNAC 3 cut(s) 539, 845, 1045
MalI GATC 4 cut(s) 183, 301, 525, 649
MboI GATC 4 cut(s) 181, 299, 523, 647
MhlI GDGCHC 2 cut(s) 633, 859
MluCI AATT 5 cut(s) 121, 285, 408, 563, 829
MlyI GAGTC 2 cut(s) 494, 956
MroNI GCCGGC 2 cut(s) 94, 211
MroXI GAANNNNTTC 2 cut(s) 368, 993
MseI TTAA 3 cut(s) 411, 873, 969
MspI CCGG 2 cut(s) 95, 212
MspR9I CCNGG 1 cut(s) 796
MvaI CCWGG 1 cut(s) 796
MvnI CGCG 1 cut(s) 861
MwoI GCNNNNNNNGC 9 cut(s) 26, 208, 212, 412, 473, 505, 812, 895, 989
NaeI GCCGGC 2 cut(s) 96, 213
NdeII GATC 4 cut(s) 181, 299, 523, 647
NgoMIV GCCGGC 2 cut(s) 94, 211
NlaIII CATG 1 cut(s) 506
NlaIV GGNNCC 1 cut(s) 9
NmeAIII GCCGAG 1 cut(s) 915
NmuCI GTSAC 3 cut(s) 539, 845, 1045
NspV TTCGAA 1 cut(s) 827
PceI AGGCCT 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 682
PdiI GCCGGC 2 cut(s) 96, 213
PdmI GAANNNNTTC 2 cut(s) 368, 993
PfeI GAWTC 4 cut(s) 323, 643, 902, 940
PleI GAGTC 2 cut(s) 493, 956
PpsI GAGTC 2 cut(s) 493, 956
PpuMI RGGWCCY 1 cut(s) 836
Psp5II RGGWCCY 1 cut(s) 836
Psp6I CCWGG 1 cut(s) 794
PspGI CCWGG 1 cut(s) 794
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 836
PspPPI RGGWCCY 1 cut(s) 836
PstI CTGCAG 2 cut(s) 405, 793
SapI GCTCTTC 1 cut(s) 682
SaqAI TTAA 3 cut(s) 411, 873, 969
Sau3AI GATC 4 cut(s) 181, 299, 523, 647
Sau96I GGNCC 1 cut(s) 836
SchI GAGTC 2 cut(s) 494, 956
ScrFI CCNGG 1 cut(s) 796
SduI GDGCHC 2 cut(s) 633, 859
SfaNI GCATC 4 cut(s) 158, 652, 815, 1009
SfcI CTRYAG 2 cut(s) 401, 789
SfuI TTCGAA 1 cut(s) 827
SinI GGWCC 1 cut(s) 836
SmlI CTYRAG 1 cut(s) 732
SmoI CTYRAG 1 cut(s) 732
Sse9I AATT 5 cut(s) 121, 285, 408, 563, 829
SseBI AGGCCT 1 cut(s) 145
SsiI CCGC 3 cut(s) 101, 242, 753
SspMI CTAG 4 cut(s) 297, 348, 464, 801
StuI AGGCCT 1 cut(s) 145
StyD4I CCNGG 1 cut(s) 794
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 2 cut(s) 583, 871
TaiI ACGT 1 cut(s) 522
TaqI TCGA 5 cut(s) 440, 633, 646, 827, 1028
TaqII GACCGA 1 cut(s) 367
TasI AATT 5 cut(s) 121, 285, 408, 563, 829
TauI GCSGC 3 cut(s) 104, 244, 755
TfiI GAWTC 4 cut(s) 323, 643, 902, 940
Tru1I TTAA 3 cut(s) 411, 873, 969
Tru9I TTAA 3 cut(s) 411, 873, 969
TscAI CASTG 1 cut(s) 727
TseFI GTSAC 3 cut(s) 539, 845, 1045
Tsp45I GTSAC 3 cut(s) 539, 845, 1045
TspGWI ACGGA 1 cut(s) 1046
TspRI CASTG 1 cut(s) 727
VpaK11BI GGWCC 1 cut(s) 836
XapI RAATTY 1 cut(s) 829
XbaI TCTAGA 1 cut(s) 347
XmnI GAANNNNTTC 2 cut(s) 368, 993
XspI CTAG 4 cut(s) 297, 348, 464, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.