Rw7G003090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0011434
Physical Location & Seq
Reverse (-)
2505169 .. 2508537
3369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G003090.1

Sequence Viewer

Length: 1074 bp
ATGGAAGAGCCCCAATCGGCCCAGTCTGCTCAATCCGGGAAGCTTCTGCGATACGCGCTGCGATCTGTGACTAAACCGAAGGAGGAGAAGCCACCGGCAGCAGAATTGTCCAACCCCTCTGCGTCTAAGAGGGCAAGGCCTGCATCAAATGTGAGCAGAAGTGTGAGTGTGCTTGATCTTTCGGGCAAGGACAAGCCTGTCAAGCCACCGAGGCGGCTCTCTGTTCCTAACAAGGCGGCTGGAACTCCAGCTCCGAAACTGGGTGGGAACATCACTCCCATTTCCGAGGCTAGATCAAGGCGGCCTGCCAAAAGCGAAACGCCTGCTTCTGATGCTTCTAGGCTGACAAGTCGGAAGAAGTTCAGTATTCTGTCCTCAGAGTCATACTGGCTTTCGCAGATTAAGCTGTCCGAGGCTGCTGGCAAGCACTCAGTTTCACTTGGGTTTTTCAAACTAGCCTTGGAGGCGGGATGTGAGCGATTGCGAGATGAGCTTAAAAGCTATGCACTTCGTCATAAACTTGGTGATGCTGACCTTGCAGTCCCACTGAAAGAGTTATTTGAGAGCTACGGTGTTGTAGAAAACGAGCAGTTGCAGGTCTCCGAAACCTGTTCCCACGTACCTGAAGAGGGGACTCGGTCTTCTGATGAAGATGCCAAGAGCTCTTCATCTACAATGGGAACTAGGAAACTGAAACCCAAGTCGTTGAACACTGATGCTGCTCAAGTTTCTCCGGTCAAAAACAAAGCCAAGAAGGAAATGCCTCAGAAGAGCACTCCTGCAACCAGGACTAGGGCGTCTGTGGCAAAGAAGTCTTCAACTCCAGGACCTGTTTCTGACTCTGGGATGCGCAGGTCAACAGCAAAGAAACCCCAGAACCCGATTAAGCAAGAAGCTAAGAATGAAAGGGACAGGAAGAAGCAGGGGTACAAATCTGCTGTTGAACAAGTAAGCGCTACATCTGCAGAGGAAGCACTGAATGAGAACAAAGAAAATGAGGTTGGTACTGGCTCGGAAGCATTAGCCATGGGGAGTTTTCATGAAGGGGTTTGGTGTAAAAGTTCACCATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

357

Amino Acids

38.5

Weight (kDa)

9.74

Isoelectric Point (pI)

59.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62550
fragaria_vesca FvH4_5g15300 FvH4_5g15300 FvH4_5g15300
malus_domestica MD01G1041800.v1.1 MD06G1189400.v1.1 MD14G1196400.v1.1
prunus_persica Prupe.5G188200_v2.0.a1
pyrus_communis pycom06g16830 pycom14g16310
rosa_chinensis RchiOBHm_Chr7g0180761
rosa_laevigata RLG00000005232
rosa_multiflora Rmu_sc0007457.1_g000012
rosa_roxburghii Rroxscaffold_3G00272560
rosa_rugosa Rorug06G0435800
rosa_samantha Rh7AG037500 Rh7BG037200 Rh7CG038900 Rh7DG037400
rosa_wichuraiana Rw7G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 197, 539, 796
Acc16I TGCGCA 1 cut(s) 851
Acc36I ACCTGC 2 cut(s) 586, 843
AccII CGCG 1 cut(s) 56
AciI CCGC 4 cut(s) 214, 236, 301, 467
AcuI CTGAAG 1 cut(s) 645
AcyI GRCGYC 1 cut(s) 797
AfaI GTAC 3 cut(s) 621, 929, 1006
AfeI AGCGCT 1 cut(s) 955
AfiI CCNNNNNNNGG 3 cut(s) 260, 629, 792
AgsI TTSAA 4 cut(s) 451, 709, 819, 944
AjnI CCWGG 2 cut(s) 785, 823
AjuI GAANNNNNNNTTGG 2 cut(s) 984, 1016
AloI GAACNNNNNNTCC 2 cut(s) 235, 267
AluBI AGCT 8 cut(s) 43, 251, 406, 493, 501, 567, 663, 896
AluI AGCT 8 cut(s) 43, 251, 406, 493, 501, 567, 663, 896
Alw21I GWGCWC 2 cut(s) 665, 776
Alw26I GTCTC 1 cut(s) 604
AlwNI CAGNNNCTG 1 cut(s) 830
Aor51HI AGCGCT 1 cut(s) 955
AoxI GGCC 3 cut(s) 18, 137, 302
ApeKI GCWGC 4 cut(s) 58, 98, 416, 719
Asp700I GAANNNNTTC 1 cut(s) 359
AspLEI GCGC 3 cut(s) 58, 852, 956
AspS9I GGNCC 2 cut(s) 19, 827
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 2 cut(s) 536, 1056
AvaII GGWCC 1 cut(s) 827
BanII GRGCYC 2 cut(s) 12, 665
BarI GAAGNNNNNNTAC 2 cut(s) 911, 943
BbsI GAAGAC 2 cut(s) 633, 807
Bbv12I GWGCWC 2 cut(s) 665, 776
BbvI GCAGC 4 cut(s) 45, 110, 403, 706
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 2 cut(s) 787, 825
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 604
BfaI CTAG 5 cut(s) 291, 339, 455, 684, 792
BfmI CTRYAG 1 cut(s) 963
BfoI RGCGCY 1 cut(s) 957
BfuAI ACCTGC 2 cut(s) 586, 843
BglI GCCNNNNNGGC 2 cut(s) 211, 464
BisI GCNGC 7 cut(s) 59, 99, 215, 237, 302, 417, 720
BlsI GCNGC 7 cut(s) 60, 100, 216, 238, 303, 418, 721
Bme1390I CCNGG 3 cut(s) 37, 787, 825
Bme18I GGWCC 1 cut(s) 827
BmgT120I GGNCC 2 cut(s) 19, 827
BmrFI CCNGG 3 cut(s) 37, 787, 825
BmrI ACTGGG 2 cut(s) 16, 269
BmsI GCATC 6 cut(s) 152, 322, 517, 643, 706, 837
BmuI ACTGGG 2 cut(s) 16, 269
BpiI GAAGAC 2 cut(s) 633, 807
BpmI CTGGAG 2 cut(s) 231, 807
BpuEI CTTGAG 1 cut(s) 708
BpuMI CCSGG 1 cut(s) 37
BsaAI YACGTR 1 cut(s) 619
BsaHI GRCGYC 1 cut(s) 797
BsaI GGTCTC 1 cut(s) 604
BsaJI CCNNGG 5 cut(s) 209, 285, 411, 459, 1026
BsaWI WCCGGW 1 cut(s) 733
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 629, 792
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 4 cut(s) 22, 264, 392, 1012
BseBI CCWGG 2 cut(s) 787, 825
BseDI CCNNGG 5 cut(s) 209, 285, 411, 459, 1026
BseGI GGATG 2 cut(s) 476, 852
BseLI CCNNNNNNNGG 3 cut(s) 260, 629, 792
BseMII CTCAG 3 cut(s) 390, 444, 779
BseNI ACTGG 4 cut(s) 22, 264, 392, 1012
BseRI GAGGAG 1 cut(s) 98
BseXI GCAGC 4 cut(s) 45, 110, 403, 706
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 3 cut(s) 20, 139, 304
BsiHKAI GWGCWC 2 cut(s) 665, 776
BsiSI CCGG 3 cut(s) 36, 95, 734
BslFI GGGAC 3 cut(s) 527, 646, 923
BslI CCNNNNNNNGG 3 cut(s) 260, 629, 792
BsmAI GTCTC 1 cut(s) 604
BsmFI GGGAC 3 cut(s) 527, 646, 923
BsnI GGCC 3 cut(s) 20, 139, 304
Bso31I GGTCTC 1 cut(s) 604
Bsp1286I GDGCHC 3 cut(s) 12, 665, 776
Bsp143I GATC 3 cut(s) 62, 175, 293
Bsp19I CCATGG 1 cut(s) 1026
BspACI CCGC 4 cut(s) 214, 236, 301, 467
BspANI GGCC 3 cut(s) 20, 139, 304
BspCNI CTCAG 3 cut(s) 389, 443, 778
BspFNI CGCG 1 cut(s) 56
BspHI TCATGA 1 cut(s) 1039
BspMAI CTGCAG 1 cut(s) 967
BspMI ACCTGC 2 cut(s) 586, 843
BspQI GCTCTTC 2 cut(s) 670, 764
BspTNI GGTCTC 1 cut(s) 604
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 4 cut(s) 22, 264, 392, 1012
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 5 cut(s) 209, 285, 411, 459, 1026
BssMI GATC 3 cut(s) 62, 175, 293
BssNI GRCGYC 1 cut(s) 797
BssT1I CCWWGG 2 cut(s) 459, 1026
Bst2UI CCWGG 2 cut(s) 787, 825
Bst4CI ACNGT 1 cut(s) 572
Bst6I CTCTTC 3 cut(s) 621, 670, 764
BstACI GRCGYC 1 cut(s) 797
BstAPI GCANNNNNTGC 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 619
BstC8I GCNNGC 5 cut(s) 141, 306, 324, 421, 425
BstDEI CTNAG 5 cut(s) 126, 376, 430, 765, 897
BstDSI CCRYGG 1 cut(s) 1026
BstF5I GGATG 2 cut(s) 476, 852
BstFNI CGCG 1 cut(s) 56
BstH2I RGCGCY 1 cut(s) 957
BstHHI GCGC 3 cut(s) 58, 852, 956
BstKTI GATC 3 cut(s) 65, 178, 296
BstMAI GTCTC 1 cut(s) 604
BstMBI GATC 3 cut(s) 62, 175, 293
BstNI CCWGG 2 cut(s) 787, 825
BstSCI CCNGG 3 cut(s) 35, 785, 823
BstSFI CTRYAG 1 cut(s) 963
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 4 cut(s) 45, 110, 403, 706
BstV2I GAAGAC 2 cut(s) 633, 807
BsuRI GGCC 3 cut(s) 20, 139, 304
BtgI CCRYGG 1 cut(s) 1026
BtsCI GGATG 2 cut(s) 476, 852
BtsIMutI CAGTG 3 cut(s) 545, 711, 974
BveI ACCTGC 2 cut(s) 586, 843
Cac8I GCNNGC 5 cut(s) 141, 306, 324, 421, 425
CaiI CAGNNNCTG 1 cut(s) 830
CciI TCATGA 1 cut(s) 1039
CfoI GCGC 3 cut(s) 58, 852, 956
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 2 cut(s) 19, 827
CseI GACGC 2 cut(s) 111, 786
Csp6I GTAC 3 cut(s) 620, 928, 1005
CviAII CATG 3 cut(s) 1027, 1040, 1068
CviQI GTAC 3 cut(s) 620, 928, 1005
DdeI CTNAG 5 cut(s) 126, 376, 430, 765, 897
DpnI GATC 3 cut(s) 64, 177, 295
DpnII GATC 3 cut(s) 62, 175, 293
DrdI GACNNNNNNGTC 3 cut(s) 197, 539, 796
DseDI GACNNNNNNGTC 3 cut(s) 197, 539, 796
Eam1104I CTCTTC 3 cut(s) 621, 670, 764
EarI CTCTTC 3 cut(s) 621, 670, 764
Ecl136II GAGCTC 1 cut(s) 663
Eco130I CCWWGG 2 cut(s) 459, 1026
Eco147I AGGCCT 1 cut(s) 139
Eco24I GRGCYC 2 cut(s) 12, 665
Eco31I GGTCTC 1 cut(s) 604
Eco47I GGWCC 1 cut(s) 827
Eco47III AGCGCT 1 cut(s) 955
Eco53kI GAGCTC 1 cut(s) 663
Eco57I CTGAAG 1 cut(s) 645
EcoICRI GAGCTC 1 cut(s) 663
EcoO109I RGGNCCY 1 cut(s) 827
EcoRII CCWGG 2 cut(s) 785, 823
EcoT14I CCWWGG 2 cut(s) 459, 1026
EcoT38I GRGCYC 2 cut(s) 12, 665
ErhI CCWWGG 2 cut(s) 459, 1026
FaeI CATG 3 cut(s) 1030, 1043, 1071
FaiI YATR 6 cut(s) 385, 504, 516, 1028, 1041, 1069
FaqI GGGAC 3 cut(s) 527, 646, 923
FatI CATG 3 cut(s) 1026, 1039, 1067
FauI CCCGC 1 cut(s) 460
Fnu4HI GCNGC 7 cut(s) 59, 99, 215, 237, 302, 417, 720
FokI GGATG 2 cut(s) 483, 859
FriOI GRGCYC 2 cut(s) 12, 665
Fsp4HI GCNGC 7 cut(s) 59, 99, 215, 237, 302, 417, 720
FspBI CTAG 5 cut(s) 291, 339, 455, 684, 792
FspI TGCGCA 1 cut(s) 851
GlaI GCGC 3 cut(s) 57, 851, 955
GluI GCNGC 7 cut(s) 59, 99, 215, 237, 302, 417, 720
GsuI CTGGAG 2 cut(s) 231, 807
HaeII RGCGCY 1 cut(s) 957
HaeIII GGCC 3 cut(s) 20, 139, 304
HapII CCGG 3 cut(s) 36, 95, 734
HgaI GACGC 2 cut(s) 111, 786
HhaI GCGC 3 cut(s) 58, 852, 956
Hin1I GRCGYC 1 cut(s) 797
Hin1II CATG 3 cut(s) 1030, 1043, 1071
Hin6I GCGC 3 cut(s) 56, 850, 954
HinP1I GCGC 3 cut(s) 56, 850, 954
HincII GTYRAC 1 cut(s) 858
HindII GTYRAC 1 cut(s) 858
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 3 cut(s) 380, 634, 839
HpaII CCGG 3 cut(s) 36, 95, 734
HphI GGTGA 2 cut(s) 536, 1056
Hpy166II GTNNAC 2 cut(s) 858, 1064
Hpy188III TCNNGA 1 cut(s) 1040
Hpy8I GTNNAC 2 cut(s) 858, 1064
HpyAV CCTTC 3 cut(s) 73, 748, 1037
HpyCH4III ACNGT 1 cut(s) 572
HpyCH4IV ACGT 1 cut(s) 618
HpyCH4V TGCA 6 cut(s) 143, 506, 539, 595, 782, 965
HpyF3I CTNAG 5 cut(s) 126, 376, 430, 765, 897
HpySE526I ACGT 1 cut(s) 618
Hsp92I GRCGYC 1 cut(s) 797
Hsp92II CATG 3 cut(s) 1030, 1043, 1071
HspAI GCGC 3 cut(s) 56, 850, 954
Kzo9I GATC 3 cut(s) 62, 175, 293
LguI GCTCTTC 2 cut(s) 670, 764
LmnI GCTCC 1 cut(s) 256
Lsp1109I GCAGC 4 cut(s) 45, 110, 403, 706
LweI GCATC 6 cut(s) 152, 322, 517, 643, 706, 837
MaeI CTAG 5 cut(s) 291, 339, 455, 684, 792
MaeII ACGT 1 cut(s) 618
MaeIII GTNAC 1 cut(s) 67
MalI GATC 3 cut(s) 64, 177, 295
MboI GATC 3 cut(s) 62, 175, 293
MboII GAAGA 9 cut(s) 17, 367, 633, 638, 657, 662, 781, 807, 928
MhlI GDGCHC 3 cut(s) 12, 665, 776
MluCI AATT 1 cut(s) 104
MlyI GAGTC 3 cut(s) 389, 628, 833
MmeI TCCRAC 2 cut(s) 135, 332
MroXI GAANNNNTTC 1 cut(s) 359
MseI TTAA 3 cut(s) 402, 495, 885
MspI CCGG 3 cut(s) 36, 95, 734
MspR9I CCNGG 3 cut(s) 37, 787, 825
MvaI CCWGG 2 cut(s) 787, 825
MvnI CGCG 1 cut(s) 56
NciI CCSGG 1 cut(s) 37
NcoI CCATGG 1 cut(s) 1026
NdeII GATC 3 cut(s) 62, 175, 293
NlaIII CATG 3 cut(s) 1030, 1043, 1071
NmuCI GTSAC 1 cut(s) 67
NsbI TGCGCA 1 cut(s) 851
PagI TCATGA 1 cut(s) 1039
PceI AGGCCT 1 cut(s) 139
PciSI GCTCTTC 2 cut(s) 670, 764
PdmI GAANNNNTTC 1 cut(s) 359
PflFI GACNNNGTC 1 cut(s) 637
PfoI TCCNGGA 2 cut(s) 35, 823
PkrI GCNGC 7 cut(s) 60, 100, 216, 238, 303, 418, 721
PleI GAGTC 3 cut(s) 388, 628, 833
PpsI GAGTC 3 cut(s) 388, 628, 833
Ppu21I YACGTR 1 cut(s) 619
PpuMI RGGWCCY 1 cut(s) 827
Psp124BI GAGCTC 1 cut(s) 665
Psp5II RGGWCCY 1 cut(s) 827
Psp6I CCWGG 2 cut(s) 785, 823
PspGI CCWGG 2 cut(s) 785, 823
PspPI GGNCC 2 cut(s) 19, 827
PspPPI RGGWCCY 1 cut(s) 827
PstI CTGCAG 1 cut(s) 967
PstNI CAGNNNCTG 1 cut(s) 830
PsyI GACNNNGTC 1 cut(s) 637
RsaI GTAC 3 cut(s) 621, 929, 1006
RsaNI GTAC 3 cut(s) 620, 928, 1005
SacI GAGCTC 1 cut(s) 665
SapI GCTCTTC 2 cut(s) 670, 764
SaqAI TTAA 3 cut(s) 402, 495, 885
SatI GCNGC 7 cut(s) 59, 99, 215, 237, 302, 417, 720
Sau3AI GATC 3 cut(s) 62, 175, 293
Sau96I GGNCC 2 cut(s) 19, 827
SchI GAGTC 3 cut(s) 389, 628, 833
ScrFI CCNGG 3 cut(s) 37, 787, 825
SduI GDGCHC 3 cut(s) 12, 665, 776
SfaNI GCATC 6 cut(s) 152, 322, 517, 643, 706, 837
SfcI CTRYAG 1 cut(s) 963
SinI GGWCC 1 cut(s) 827
SmlI CTYRAG 1 cut(s) 723
SmoI CTYRAG 1 cut(s) 723
Sse9I AATT 1 cut(s) 104
SseBI AGGCCT 1 cut(s) 139
SsiI CCGC 4 cut(s) 214, 236, 301, 467
SspMI CTAG 5 cut(s) 291, 339, 455, 684, 792
SstI GAGCTC 1 cut(s) 665
StuI AGGCCT 1 cut(s) 139
StyD4I CCNGG 3 cut(s) 35, 785, 823
StyI CCWWGG 2 cut(s) 459, 1026
TaaI ACNGT 1 cut(s) 572
TaiI ACGT 1 cut(s) 621
TaqII GACCGA 1 cut(s) 627
TasI AATT 1 cut(s) 104
TauI GCSGC 3 cut(s) 217, 239, 304
Tru1I TTAA 3 cut(s) 402, 495, 885
Tru9I TTAA 3 cut(s) 402, 495, 885
TscAI CASTG 3 cut(s) 552, 718, 981
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 4 cut(s) 58, 98, 416, 719
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 5 cut(s) 657, 663, 918, 1028, 1056
TspRI CASTG 3 cut(s) 552, 718, 981
Tth111I GACNNNGTC 1 cut(s) 637
VpaK11BI GGWCC 1 cut(s) 827
XmnI GAANNNNTTC 1 cut(s) 359
XspI CTAG 5 cut(s) 291, 339, 455, 684, 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.