Prupe.5G188200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0011434
Physical Location & Seq
Reverse (-)
15500148 .. 15502708
2561 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G188200.1

Sequence Viewer

Length: 1047 bp
ATGGAGGACTCCCAGTCTGCTCAATCTGGAAAGCTTCTTCGGTATGCGCTCCGATCGGGGTCTAAGTCCAAGGAGGAGAAGCCTCCGGTCGCCGCCGAGTCTACTAACAATTCTGCGTCTAAGAGGGGAAAACCTGCATCAACTCTAAGTAAAAGTATGGGTGTTCTTGATCTCTCTGGCAAGGACAAGCCTGCCAAGCCACCCAGAAGGCTCTCCAATCCTCCCAAACCGGCTGGCACTCCAGCTCCAAAATTGCTTGGCAACATCACCCCAATCTCTGAGGCCAGATCAAGGAGGTCTGTGAAAAGTGAGACACCTGCTTCTGATGTTTCTAAGTCTACAAGCCGGAAGAAGTTCAGTGTCCTCTCCTCAGCATCATACTGGCTGACACAGATTAAGCTGTCTGAGGCTGCTGGCAAGCACTCAATTTCACTTGGACTTTTCAAACTAGCCTTGGAGGCTGGATGTGAGCCTCTTCATCGAATGCGAGATGAGCTAAAGTCATATGTGGTCCGTCACAACCTTGATGACCTTGAAGATCCTCTGAAGGAATTATTGGAGAGCAAAAGCAATGTAGAAAGGGAGCAGTTGCAGGTCTCCGAAACCTGTTCTCAGGTACCTGATGAGGGCACTCGATCTTCTGATGATGATGTCAAGAGCTGTTCTTCTGCAATGGGAACTAGGAAATTAAAACCCAAGTCGTTGAACACTGATGCTGCTCCAGTTTCTCCAGTCAAGGCCTCAGCCAAGAAGGAGATTGCTCAGAAAAGCATTCCTGCAACCAAGACTAGAGGATCTTTGGTGAAGACTTCTTCAAATTCTGGACCTGTTTCTGACAATGGGGCTCGTGGGCCAACTGCAAAGAAACCCCAAAAGCCAAGCAAGCAAGAATCTAACAAAGTAAAAGACAGGACTAAGAAGCAGGGGGATAAATCTGCTGGCTCGGTTAGCACTACTCCTGCAGGGCAAGAAGCACTTCATGAGAACAAAGAAAATGAGGATGCTCCACCAATGGAAGATGTCAGTTTGACTGCTGAAGTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

349

Amino Acids

37.21

Weight (kDa)

9.63

Isoelectric Point (pI)

46.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62550
fragaria_vesca FvH4_5g15300 FvH4_5g15300 FvH4_5g15300
malus_domestica MD01G1041800.v1.1 MD06G1189400.v1.1 MD14G1196400.v1.1
prunus_persica Prupe.5G188200_v2.0.a1
pyrus_communis pycom06g16830 pycom14g16310
rosa_chinensis RchiOBHm_Chr7g0180761
rosa_laevigata RLG00000005232
rosa_multiflora Rmu_sc0007457.1_g000012
rosa_roxburghii Rroxscaffold_3G00272560
rosa_rugosa Rorug06G0435800
rosa_samantha Rh7AG037500 Rh7BG037200 Rh7CG038900 Rh7DG037400
rosa_wichuraiana Rw7G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 325
Acc36I ACCTGC 3 cut(s) 142, 325, 583
Acc65I GGTACC 1 cut(s) 616
AccB1I GGYRCC 1 cut(s) 616
AccI GTMKAC 2 cut(s) 101, 338
AciI CCGC 1 cut(s) 93
AclWI GGATC 2 cut(s) 533, 802
AcsI RAATTY 1 cut(s) 817
AcuI CTGAAG 1 cut(s) 566
AfaI GTAC 1 cut(s) 618
AfiI CCNNNNNNNGG 2 cut(s) 291, 626
AgsI TTSAA 4 cut(s) 445, 536, 706, 816
AhdI GACNNNNNGTC 1 cut(s) 13
AjuI GAANNNNNNNTTGG 2 cut(s) 539, 571
AluBI AGCT 5 cut(s) 34, 245, 400, 496, 660
AluI AGCT 5 cut(s) 34, 245, 400, 496, 660
Alw26I GTCTC 2 cut(s) 305, 601
AlwI GGATC 2 cut(s) 533, 802
AoxI GGCC 3 cut(s) 282, 738, 851
ApeKI GCWGC 2 cut(s) 410, 716
ApoI RAATTY 1 cut(s) 817
Asp700I GAANNNNTTC 2 cut(s) 353, 975
Asp718I GGTACC 1 cut(s) 616
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 3 cut(s) 511, 824, 851
AsuHPI GGTGA 2 cut(s) 259, 814
AvaII GGWCC 2 cut(s) 511, 824
BaeGI GKGCMC 1 cut(s) 632
BanI GGYRCC 1 cut(s) 616
BanII GRGCYC 1 cut(s) 847
BauI CACGAG 1 cut(s) 846
BbsI GAAGAC 1 cut(s) 812
BbvCI CCTCAGC 2 cut(s) 370, 742
BbvI GCAGC 2 cut(s) 397, 703
BcoDI GTCTC 2 cut(s) 305, 601
BfaI CTAG 3 cut(s) 449, 681, 789
BfmI CTRYAG 1 cut(s) 960
BfuAI ACCTGC 3 cut(s) 142, 325, 583
BglI GCCNNNNNGGC 1 cut(s) 458
BisI GCNGC 3 cut(s) 93, 411, 717
BlsI GCNGC 3 cut(s) 94, 412, 718
Bme18I GGWCC 2 cut(s) 511, 824
BmeRI GACNNNNNGTC 1 cut(s) 13
BmgT120I GGNCC 3 cut(s) 511, 824, 851
BmiI GGNNCC 1 cut(s) 618
BmrI ACTGGG 1 cut(s) 7
BmsI GCATC 4 cut(s) 146, 383, 703, 991
BmuI ACTGGG 1 cut(s) 7
BpiI GAAGAC 1 cut(s) 812
BpmI CTGGAG 3 cut(s) 225, 705, 714
Bpu10I CCTNAGC 2 cut(s) 370, 742
BsaI GGTCTC 1 cut(s) 601
BsaJI CCNNGG 2 cut(s) 69, 453
BsaWI WCCGGW 1 cut(s) 85
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bsc4I CCNNNNNNNGG 2 cut(s) 291, 626
Bse118I RCCGGY 1 cut(s) 229
Bse1I ACTGG 4 cut(s) 13, 386, 722, 731
Bse3DI GCAATG 2 cut(s) 577, 678
BseDI CCNNGG 2 cut(s) 69, 453
BseGI GGATG 2 cut(s) 470, 1006
BseLI CCNNNNNNNGG 2 cut(s) 291, 626
BseMI GCAATG 2 cut(s) 577, 678
BseMII CTCAG 6 cut(s) 270, 384, 396, 626, 756, 776
BseNI ACTGG 4 cut(s) 13, 386, 722, 731
BseRI GAGGAG 2 cut(s) 89, 358
BseSI GKGCMC 1 cut(s) 632
BseXI GCAGC 2 cut(s) 397, 703
Bsh1285I CGRYCG 2 cut(s) 56, 90
BshFI GGCC 3 cut(s) 284, 740, 853
BshNI GGYRCC 1 cut(s) 616
BsiEI CGRYCG 2 cut(s) 56, 90
BsiSI CCGG 3 cut(s) 86, 230, 346
BslI CCNNNNNNNGG 2 cut(s) 291, 626
BsmAI GTCTC 2 cut(s) 305, 601
BsmI GAATGC 2 cut(s) 489, 771
BsnI GGCC 3 cut(s) 284, 740, 853
Bso31I GGTCTC 1 cut(s) 601
Bsp1286I GDGCHC 2 cut(s) 632, 847
Bsp143I GATC 6 cut(s) 53, 169, 287, 538, 635, 794
BspACI CCGC 1 cut(s) 93
BspANI GGCC 3 cut(s) 284, 740, 853
BspCNI CTCAG 6 cut(s) 271, 383, 397, 625, 755, 775
BspHI TCATGA 1 cut(s) 979
BspLI GGNNCC 1 cut(s) 618
BspMAI CTGCAG 1 cut(s) 964
BspMI ACCTGC 3 cut(s) 142, 325, 583
BspPI GGATC 2 cut(s) 533, 802
BspT107I GGYRCC 1 cut(s) 616
BspTNI GGTCTC 1 cut(s) 601
BsrDI GCAATG 2 cut(s) 577, 678
BsrFI RCCGGY 1 cut(s) 229
BsrI ACTGG 4 cut(s) 13, 386, 722, 731
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 2 cut(s) 69, 453
BssMI GATC 6 cut(s) 53, 169, 287, 538, 635, 794
BssSI CACGAG 1 cut(s) 846
BssT1I CCWWGG 2 cut(s) 69, 453
Bst2BI CACGAG 1 cut(s) 846
Bst6I CTCTTC 1 cut(s) 480
BstC8I GCNNGC 6 cut(s) 192, 235, 415, 419, 884, 940
BstF5I GGATG 2 cut(s) 470, 1006
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 6 cut(s) 56, 172, 290, 541, 638, 797
BstMAI GTCTC 2 cut(s) 305, 601
BstMBI GATC 6 cut(s) 53, 169, 287, 538, 635, 794
BstMCI CGRYCG 2 cut(s) 56, 90
BstMWI GCNNNNNNNGC 5 cut(s) 196, 458, 493, 883, 948
BstSFI CTRYAG 1 cut(s) 960
BstSLI GKGCMC 1 cut(s) 632
BstV1I GCAGC 2 cut(s) 397, 703
BstV2I GAAGAC 1 cut(s) 812
BstX2I RGATCY 2 cut(s) 538, 794
BstYI RGATCY 2 cut(s) 538, 794
BsuRI GGCC 3 cut(s) 284, 740, 853
BtsCI GGATG 2 cut(s) 470, 1006
BtsIMutI CAGTG 2 cut(s) 364, 708
BveI ACCTGC 3 cut(s) 142, 325, 583
Cac8I GCNNGC 6 cut(s) 192, 235, 415, 419, 884, 940
CciI TCATGA 1 cut(s) 979
CfoI GCGC 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 229
Cfr13I GGNCC 3 cut(s) 511, 824, 851
CseI GACGC 1 cut(s) 105
Csp6I GTAC 1 cut(s) 617
CviAII CATG 2 cut(s) 980, 1042
CviQI GTAC 1 cut(s) 617
DpnI GATC 6 cut(s) 55, 171, 289, 540, 637, 796
DpnII GATC 6 cut(s) 53, 169, 287, 538, 635, 794
DriI GACNNNNNGTC 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 480
Eam1105I GACNNNNNGTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 480
Eco130I CCWWGG 2 cut(s) 69, 453
Eco147I AGGCCT 1 cut(s) 740
Eco24I GRGCYC 1 cut(s) 847
Eco31I GGTCTC 1 cut(s) 601
Eco47I GGWCC 2 cut(s) 511, 824
Eco57I CTGAAG 1 cut(s) 566
EcoT14I CCWWGG 2 cut(s) 69, 453
EcoT38I GRGCYC 1 cut(s) 847
ErhI CCWWGG 2 cut(s) 69, 453
FaeI CATG 2 cut(s) 983, 1045
FaiI YATR 7 cut(s) 45, 158, 379, 505, 507, 981, 1043
FalI AAGNNNNNCTT 2 cut(s) 960, 992
FatI CATG 2 cut(s) 979, 1041
FauNDI CATATG 1 cut(s) 505
FblI GTMKAC 2 cut(s) 101, 338
Fnu4HI GCNGC 3 cut(s) 93, 411, 717
FokI GGATG 2 cut(s) 477, 1013
FriOI GRGCYC 1 cut(s) 847
Fsp4HI GCNGC 3 cut(s) 93, 411, 717
FspBI CTAG 3 cut(s) 449, 681, 789
GlaI GCGC 1 cut(s) 48
GluI GCNGC 3 cut(s) 93, 411, 717
GsuI CTGGAG 3 cut(s) 225, 705, 714
HaeIII GGCC 3 cut(s) 284, 740, 853
HapII CCGG 3 cut(s) 86, 230, 346
HgaI GACGC 1 cut(s) 105
HhaI GCGC 1 cut(s) 49
Hin1II CATG 2 cut(s) 983, 1045
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 3 cut(s) 8, 98, 890
HpaII CCGG 3 cut(s) 86, 230, 346
HphI GGTGA 2 cut(s) 259, 814
Hpy166II GTNNAC 2 cut(s) 102, 339
Hpy188I TCNGA 9 cut(s) 53, 280, 325, 406, 546, 601, 643, 765, 835
Hpy188III TCNNGA 5 cut(s) 27, 167, 655, 822, 980
Hpy8I GTNNAC 2 cut(s) 102, 339
HpyAV CCTTC 3 cut(s) 201, 541, 745
HpyCH4V TGCA 6 cut(s) 137, 592, 671, 779, 860, 962
HpyF10VI GCNNNNNNNGC 5 cut(s) 196, 458, 493, 883, 948
Hsp92II CATG 2 cut(s) 983, 1045
HspAI GCGC 1 cut(s) 47
KpnI GGTACC 1 cut(s) 620
Kzo9I GATC 6 cut(s) 53, 169, 287, 538, 635, 794
LmnI GCTCC 5 cut(s) 54, 250, 583, 724, 1009
Lsp1109I GCAGC 2 cut(s) 397, 703
LweI GCATC 4 cut(s) 146, 383, 703, 991
MaeI CTAG 3 cut(s) 449, 681, 789
MaeIII GTNAC 1 cut(s) 515
MalI GATC 6 cut(s) 55, 171, 289, 540, 637, 796
MboI GATC 6 cut(s) 53, 169, 287, 538, 635, 794
MboII GAAGA 9 cut(s) 29, 361, 467, 548, 630, 657, 804, 817, 1028
MflI RGATCY 2 cut(s) 538, 794
MhlI GDGCHC 2 cut(s) 632, 847
MluCI AATT 6 cut(s) 109, 251, 426, 551, 686, 817
MlyI GAGTC 2 cut(s) 2, 107
MroXI GAANNNNTTC 2 cut(s) 353, 975
MseI TTAA 2 cut(s) 396, 689
MspI CCGG 3 cut(s) 86, 230, 346
Mva1269I GAATGC 2 cut(s) 489, 771
MwoI GCNNNNNNNGC 5 cut(s) 196, 458, 493, 883, 948
NdeI CATATG 1 cut(s) 505
NdeII GATC 6 cut(s) 53, 169, 287, 538, 635, 794
NlaIII CATG 2 cut(s) 983, 1045
NlaIV GGNNCC 1 cut(s) 618
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 515
PagI TCATGA 1 cut(s) 979
PaqCI CACCTGC 1 cut(s) 325
PceI AGGCCT 1 cut(s) 740
PctI GAATGC 2 cut(s) 489, 771
PdmI GAANNNNTTC 2 cut(s) 353, 975
PfeI GAWTC 1 cut(s) 890
PkrI GCNGC 3 cut(s) 94, 412, 718
Ple19I CGATCG 1 cut(s) 56
PleI GAGTC 2 cut(s) 2, 106
PpsI GAGTC 2 cut(s) 2, 106
PspN4I GGNNCC 1 cut(s) 618
PspPI GGNCC 3 cut(s) 511, 824, 851
PstI CTGCAG 1 cut(s) 964
PsuI RGATCY 2 cut(s) 538, 794
PvuI CGATCG 1 cut(s) 56
RsaI GTAC 1 cut(s) 618
RsaNI GTAC 1 cut(s) 617
SaqAI TTAA 2 cut(s) 396, 689
SatI GCNGC 3 cut(s) 93, 411, 717
Sau3AI GATC 6 cut(s) 53, 169, 287, 538, 635, 794
Sau96I GGNCC 3 cut(s) 511, 824, 851
SbfI CCTGCAGG 1 cut(s) 964
SchI GAGTC 2 cut(s) 2, 107
SdaI CCTGCAGG 1 cut(s) 964
SduI GDGCHC 2 cut(s) 632, 847
SfaNI GCATC 4 cut(s) 146, 383, 703, 991
SfcI CTRYAG 1 cut(s) 960
SinI GGWCC 2 cut(s) 511, 824
Sse8387I CCTGCAGG 1 cut(s) 964
Sse9I AATT 6 cut(s) 109, 251, 426, 551, 686, 817
SseBI AGGCCT 1 cut(s) 740
SsiI CCGC 1 cut(s) 93
SspMI CTAG 3 cut(s) 449, 681, 789
StuI AGGCCT 1 cut(s) 740
StyI CCWWGG 2 cut(s) 69, 453
TaqI TCGA 2 cut(s) 481, 634
TasI AATT 6 cut(s) 109, 251, 426, 551, 686, 817
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 1 cut(s) 890
Tru1I TTAA 2 cut(s) 396, 689
Tru9I TTAA 2 cut(s) 396, 689
TscAI CASTG 2 cut(s) 364, 715
TseFI GTSAC 1 cut(s) 515
TseI GCWGC 2 cut(s) 410, 716
Tsp45I GTSAC 1 cut(s) 515
TspDTI ATGAA 2 cut(s) 467, 968
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 2 cut(s) 364, 715
VpaK11BI GGWCC 2 cut(s) 511, 824
XapI RAATTY 1 cut(s) 817
XmiI GTMKAC 2 cut(s) 101, 338
XmnI GAANNNNTTC 2 cut(s) 353, 975
XspI CTAG 3 cut(s) 449, 681, 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.