Rmu_sc0007457.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007457.1
OG0011434
Physical Location & Seq
Forward (+)
81339 .. 83267
1929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007457.1_g000012.1.cds

Sequence Viewer

Length: 1062 bp
atggaagagccccaatcggcccagtctgctcaatccgggaagcttctgcgatacgcgctgcgatctgtgactaaaccgaaggaggagaagccaccggcagcagaattgtccaacccctctgcttctaagagggcaaggcctgcatcaaatgtgagcagaagtgtgagtgtgcttgatctttcgggcaaggacaagcctgtcaagccaccgaggaggctctctgttcctaacaaggcggctggaactgcagctccgaaactgggtgggaacatcactcccatttccgaggctagatcaaggcggcctgccaaaagcgaaacgcctgcttctgatgcttctaggctgacaagtcggaagaagttcagtattctgtcctcagagtcatactggctttcgcagattaagctgtccgaggctgctggcaagcactcagtttcacttgggtttttcaaactagccttggaggcgggatgtgagcaacctcttcagcgattgcgagatgagctaaaaagctatgcacttcgtcataaacttggtgatgctgaccttgcagtcccactgaaagagttatttgagagctacggtgttgtagaaaacgagcagttgcaggtctccgaaacctgttcccacgtacctgaagaggggactcggtcttctgatgaagatgccaagagctcttcatctacaatgggaactaggaaactgaaacccaagtctttgaacactgatgctgctcaagtttctccggtcaaaaacaaagccaagaaggaaatgcctcagaagagcactcctgcaaccaggactagggcgtctgtggcaaagaagtcttcaactccaggacctgtttctgactctgggatgcgcaggtcaacagcaaagaaaccccagaacccgattaagcaagaagctaagaatgaaagggacaggaagaagcaggggtacaaatctgctgttgaacaaggctcagtaagcgctacatctgcagaggaagcactgaatgagaacaaagaaaatgaggatgctgcctcaatggaggagataagtttgactgaagttgcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

353

Amino Acids

38.11

Weight (kDa)

9.69

Isoelectric Point (pI)

63.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62550
fragaria_vesca FvH4_5g15300 FvH4_5g15300 FvH4_5g15300
malus_domestica MD01G1041800.v1.1 MD06G1189400.v1.1 MD14G1196400.v1.1
prunus_persica Prupe.5G188200_v2.0.a1
pyrus_communis pycom06g16830 pycom14g16310
rosa_chinensis RchiOBHm_Chr7g0180761
rosa_laevigata RLG00000005232
rosa_multiflora Rmu_sc0007457.1_g000012
rosa_roxburghii Rroxscaffold_3G00272560
rosa_rugosa Rorug06G0435800
rosa_samantha Rh7AG037500 Rh7BG037200 Rh7CG038900 Rh7DG037400
rosa_wichuraiana Rw7G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 197, 551, 808
Acc16I TGCGCA 1 cut(s) 863
Acc36I ACCTGC 2 cut(s) 598, 855
AccII CGCG 1 cut(s) 56
AciI CCGC 3 cut(s) 236, 301, 467
AcuI CTGAAG 2 cut(s) 470, 657
AcyI GRCGYC 1 cut(s) 809
AfaI GTAC 2 cut(s) 633, 941
AfeI AGCGCT 1 cut(s) 973
AfiI CCNNNNNNNGG 3 cut(s) 260, 641, 804
AgsI TTSAA 4 cut(s) 451, 721, 831, 956
AjnI CCWGG 2 cut(s) 797, 835
AloI GAACNNNNNNTCC 2 cut(s) 235, 267
AluBI AGCT 8 cut(s) 43, 251, 406, 505, 513, 579, 675, 908
AluI AGCT 8 cut(s) 43, 251, 406, 505, 513, 579, 675, 908
Alw21I GWGCWC 2 cut(s) 677, 788
Alw26I GTCTC 1 cut(s) 616
AlwNI CAGNNNCTG 1 cut(s) 842
Aor51HI AGCGCT 1 cut(s) 973
AoxI GGCC 3 cut(s) 18, 137, 302
ApeKI GCWGC 6 cut(s) 58, 98, 248, 416, 731, 1022
Asp700I GAANNNNTTC 1 cut(s) 359
AspLEI GCGC 3 cut(s) 58, 864, 974
AspS9I GGNCC 2 cut(s) 19, 839
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 548
AvaII GGWCC 1 cut(s) 839
BanII GRGCYC 2 cut(s) 12, 677
BarI GAAGNNNNNNTAC 2 cut(s) 923, 955
BbsI GAAGAC 2 cut(s) 645, 819
Bbv12I GWGCWC 2 cut(s) 677, 788
BbvI GCAGC 6 cut(s) 45, 110, 260, 403, 718, 1009
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 2 cut(s) 799, 837
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 616
BfaI CTAG 5 cut(s) 291, 339, 455, 696, 804
BfmI CTRYAG 2 cut(s) 246, 981
BfoI RGCGCY 1 cut(s) 975
BfuAI ACCTGC 2 cut(s) 598, 855
BglI GCCNNNNNGGC 1 cut(s) 464
BisI GCNGC 8 cut(s) 59, 99, 237, 249, 302, 417, 732, 1023
BlsI GCNGC 8 cut(s) 60, 100, 238, 250, 303, 418, 733, 1024
Bme1390I CCNGG 3 cut(s) 37, 799, 837
Bme18I GGWCC 1 cut(s) 839
BmgT120I GGNCC 2 cut(s) 19, 839
BmrFI CCNGG 3 cut(s) 37, 799, 837
BmrI ACTGGG 2 cut(s) 16, 269
BmsI GCATC 7 cut(s) 152, 322, 529, 655, 718, 849, 1009
BmuI ACTGGG 2 cut(s) 16, 269
BpiI GAAGAC 2 cut(s) 645, 819
BpmI CTGGAG 1 cut(s) 819
BpuEI CTTGAG 1 cut(s) 720
BpuMI CCSGG 1 cut(s) 37
BsaAI YACGTR 1 cut(s) 631
BsaHI GRCGYC 1 cut(s) 809
BsaI GGTCTC 1 cut(s) 616
BsaJI CCNNGG 4 cut(s) 209, 285, 411, 459
BsaWI WCCGGW 1 cut(s) 745
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 641, 804
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 3 cut(s) 22, 264, 392
BseBI CCWGG 2 cut(s) 799, 837
BseDI CCNNGG 4 cut(s) 209, 285, 411, 459
BseGI GGATG 3 cut(s) 476, 864, 1024
BseLI CCNNNNNNNGG 3 cut(s) 260, 641, 804
BseMII CTCAG 4 cut(s) 390, 444, 791, 978
BseNI ACTGG 3 cut(s) 22, 264, 392
BseRI GAGGAG 3 cut(s) 98, 226, 1049
BseXI GCAGC 6 cut(s) 45, 110, 260, 403, 718, 1009
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 3 cut(s) 20, 139, 304
BsiHKAI GWGCWC 2 cut(s) 677, 788
BsiSI CCGG 3 cut(s) 36, 95, 746
BslFI GGGAC 3 cut(s) 539, 658, 935
BslI CCNNNNNNNGG 3 cut(s) 260, 641, 804
BsmAI GTCTC 1 cut(s) 616
BsmFI GGGAC 3 cut(s) 539, 658, 935
BsnI GGCC 3 cut(s) 20, 139, 304
Bso31I GGTCTC 1 cut(s) 616
Bsp1286I GDGCHC 3 cut(s) 12, 677, 788
Bsp143I GATC 3 cut(s) 62, 175, 293
BspACI CCGC 3 cut(s) 236, 301, 467
BspANI GGCC 3 cut(s) 20, 139, 304
BspCNI CTCAG 4 cut(s) 389, 443, 790, 977
BspFNI CGCG 1 cut(s) 56
BspMAI CTGCAG 2 cut(s) 250, 985
BspMI ACCTGC 2 cut(s) 598, 855
BspQI GCTCTTC 2 cut(s) 682, 776
BspTNI GGTCTC 1 cut(s) 616
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 3 cut(s) 22, 264, 392
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 4 cut(s) 209, 285, 411, 459
BssMI GATC 3 cut(s) 62, 175, 293
BssNI GRCGYC 1 cut(s) 809
BssT1I CCWWGG 1 cut(s) 459
Bst2UI CCWGG 2 cut(s) 799, 837
Bst4CI ACNGT 1 cut(s) 584
Bst6I CTCTTC 4 cut(s) 489, 633, 682, 776
BstACI GRCGYC 1 cut(s) 809
BstAPI GCANNNNNTGC 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 631
BstC8I GCNNGC 5 cut(s) 141, 306, 324, 421, 425
BstDEI CTNAG 6 cut(s) 126, 376, 430, 777, 909, 964
BstF5I GGATG 3 cut(s) 476, 864, 1024
BstFNI CGCG 1 cut(s) 56
BstH2I RGCGCY 1 cut(s) 975
BstHHI GCGC 3 cut(s) 58, 864, 974
BstKTI GATC 3 cut(s) 65, 178, 296
BstMAI GTCTC 1 cut(s) 616
BstMBI GATC 3 cut(s) 62, 175, 293
BstNI CCWGG 2 cut(s) 799, 837
BstSCI CCNGG 3 cut(s) 35, 797, 835
BstSFI CTRYAG 2 cut(s) 246, 981
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 6 cut(s) 45, 110, 260, 403, 718, 1009
BstV2I GAAGAC 2 cut(s) 645, 819
BsuRI GGCC 3 cut(s) 20, 139, 304
BtsCI GGATG 3 cut(s) 476, 864, 1024
BtsIMutI CAGTG 3 cut(s) 557, 723, 992
BveI ACCTGC 2 cut(s) 598, 855
Cac8I GCNNGC 5 cut(s) 141, 306, 324, 421, 425
CaiI CAGNNNCTG 1 cut(s) 842
CfoI GCGC 3 cut(s) 58, 864, 974
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 2 cut(s) 19, 839
CseI GACGC 1 cut(s) 798
Csp6I GTAC 2 cut(s) 632, 940
CviQI GTAC 2 cut(s) 632, 940
DdeI CTNAG 6 cut(s) 126, 376, 430, 777, 909, 964
DpnI GATC 3 cut(s) 64, 177, 295
DpnII GATC 3 cut(s) 62, 175, 293
DrdI GACNNNNNNGTC 3 cut(s) 197, 551, 808
DseDI GACNNNNNNGTC 3 cut(s) 197, 551, 808
Eam1104I CTCTTC 4 cut(s) 489, 633, 682, 776
EarI CTCTTC 4 cut(s) 489, 633, 682, 776
Ecl136II GAGCTC 1 cut(s) 675
Eco130I CCWWGG 1 cut(s) 459
Eco147I AGGCCT 1 cut(s) 139
Eco24I GRGCYC 2 cut(s) 12, 677
Eco31I GGTCTC 1 cut(s) 616
Eco47I GGWCC 1 cut(s) 839
Eco47III AGCGCT 1 cut(s) 973
Eco53kI GAGCTC 1 cut(s) 675
Eco57I CTGAAG 2 cut(s) 470, 657
EcoICRI GAGCTC 1 cut(s) 675
EcoO109I RGGNCCY 1 cut(s) 839
EcoRII CCWGG 2 cut(s) 797, 835
EcoT14I CCWWGG 1 cut(s) 459
EcoT38I GRGCYC 2 cut(s) 12, 677
ErhI CCWWGG 1 cut(s) 459
FaiI YATR 4 cut(s) 385, 516, 528, 1060
FaqI GGGAC 3 cut(s) 539, 658, 935
FauI CCCGC 1 cut(s) 460
Fnu4HI GCNGC 8 cut(s) 59, 99, 237, 249, 302, 417, 732, 1023
FokI GGATG 3 cut(s) 483, 871, 1031
FriOI GRGCYC 2 cut(s) 12, 677
Fsp4HI GCNGC 8 cut(s) 59, 99, 237, 249, 302, 417, 732, 1023
FspBI CTAG 5 cut(s) 291, 339, 455, 696, 804
FspI TGCGCA 1 cut(s) 863
GlaI GCGC 3 cut(s) 57, 863, 973
GluI GCNGC 8 cut(s) 59, 99, 237, 249, 302, 417, 732, 1023
GsuI CTGGAG 1 cut(s) 819
HaeII RGCGCY 1 cut(s) 975
HaeIII GGCC 3 cut(s) 20, 139, 304
HapII CCGG 3 cut(s) 36, 95, 746
HgaI GACGC 1 cut(s) 798
HhaI GCGC 3 cut(s) 58, 864, 974
Hin1I GRCGYC 1 cut(s) 809
Hin6I GCGC 3 cut(s) 56, 862, 972
HinP1I GCGC 3 cut(s) 56, 862, 972
HincII GTYRAC 1 cut(s) 870
HindII GTYRAC 1 cut(s) 870
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 3 cut(s) 380, 646, 851
HpaII CCGG 3 cut(s) 36, 95, 746
HphI GGTGA 1 cut(s) 548
Hpy166II GTNNAC 1 cut(s) 870
Hpy8I GTNNAC 1 cut(s) 870
HpyAV CCTTC 2 cut(s) 73, 760
HpyCH4III ACNGT 1 cut(s) 584
HpyCH4IV ACGT 1 cut(s) 630
HpyCH4V TGCA 8 cut(s) 143, 248, 518, 551, 607, 794, 983, 1058
HpyF3I CTNAG 6 cut(s) 126, 376, 430, 777, 909, 964
HpySE526I ACGT 1 cut(s) 630
Hsp92I GRCGYC 1 cut(s) 809
HspAI GCGC 3 cut(s) 56, 862, 972
Kzo9I GATC 3 cut(s) 62, 175, 293
LguI GCTCTTC 2 cut(s) 682, 776
LmnI GCTCC 1 cut(s) 256
Lsp1109I GCAGC 6 cut(s) 45, 110, 260, 403, 718, 1009
LweI GCATC 7 cut(s) 152, 322, 529, 655, 718, 849, 1009
MaeI CTAG 5 cut(s) 291, 339, 455, 696, 804
MaeII ACGT 1 cut(s) 630
MaeIII GTNAC 1 cut(s) 67
MalI GATC 3 cut(s) 64, 177, 295
MboI GATC 3 cut(s) 62, 175, 293
MhlI GDGCHC 3 cut(s) 12, 677, 788
MluCI AATT 1 cut(s) 104
MlyI GAGTC 3 cut(s) 389, 640, 845
MmeI TCCRAC 2 cut(s) 135, 332
MroXI GAANNNNTTC 1 cut(s) 359
MseI TTAA 2 cut(s) 402, 897
MspI CCGG 3 cut(s) 36, 95, 746
MspR9I CCNGG 3 cut(s) 37, 799, 837
MvaI CCWGG 2 cut(s) 799, 837
MvnI CGCG 1 cut(s) 56
NciI CCSGG 1 cut(s) 37
NdeII GATC 3 cut(s) 62, 175, 293
NmuCI GTSAC 1 cut(s) 67
NsbI TGCGCA 1 cut(s) 863
PceI AGGCCT 1 cut(s) 139
PciSI GCTCTTC 2 cut(s) 682, 776
PdmI GAANNNNTTC 1 cut(s) 359
PflFI GACNNNGTC 1 cut(s) 649
PfoI TCCNGGA 2 cut(s) 35, 835
PkrI GCNGC 8 cut(s) 60, 100, 238, 250, 303, 418, 733, 1024
PleI GAGTC 3 cut(s) 388, 640, 845
PpsI GAGTC 3 cut(s) 388, 640, 845
Ppu21I YACGTR 1 cut(s) 631
PpuMI RGGWCCY 1 cut(s) 839
Psp124BI GAGCTC 1 cut(s) 677
Psp5II RGGWCCY 1 cut(s) 839
Psp6I CCWGG 2 cut(s) 797, 835
PspGI CCWGG 2 cut(s) 797, 835
PspPI GGNCC 2 cut(s) 19, 839
PspPPI RGGWCCY 1 cut(s) 839
PstI CTGCAG 2 cut(s) 250, 985
PstNI CAGNNNCTG 1 cut(s) 842
PsyI GACNNNGTC 1 cut(s) 649
RsaI GTAC 2 cut(s) 633, 941
RsaNI GTAC 2 cut(s) 632, 940
SacI GAGCTC 1 cut(s) 677
SapI GCTCTTC 2 cut(s) 682, 776
SaqAI TTAA 2 cut(s) 402, 897
SatI GCNGC 8 cut(s) 59, 99, 237, 249, 302, 417, 732, 1023
Sau3AI GATC 3 cut(s) 62, 175, 293
Sau96I GGNCC 2 cut(s) 19, 839
SchI GAGTC 3 cut(s) 389, 640, 845
ScrFI CCNGG 3 cut(s) 37, 799, 837
SduI GDGCHC 3 cut(s) 12, 677, 788
SfaNI GCATC 7 cut(s) 152, 322, 529, 655, 718, 849, 1009
SfcI CTRYAG 2 cut(s) 246, 981
SinI GGWCC 1 cut(s) 839
SmlI CTYRAG 1 cut(s) 735
SmoI CTYRAG 1 cut(s) 735
Sse9I AATT 1 cut(s) 104
SseBI AGGCCT 1 cut(s) 139
SsiI CCGC 3 cut(s) 236, 301, 467
SspMI CTAG 5 cut(s) 291, 339, 455, 696, 804
SstI GAGCTC 1 cut(s) 677
StuI AGGCCT 1 cut(s) 139
StyD4I CCNGG 3 cut(s) 35, 797, 835
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 1 cut(s) 584
TaiI ACGT 1 cut(s) 633
TaqII GACCGA 1 cut(s) 639
TasI AATT 1 cut(s) 104
TauI GCSGC 2 cut(s) 239, 304
Tru1I TTAA 2 cut(s) 402, 897
Tru9I TTAA 2 cut(s) 402, 897
TscAI CASTG 3 cut(s) 564, 730, 999
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 6 cut(s) 58, 98, 248, 416, 731, 1022
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 3 cut(s) 669, 675, 930
TspRI CASTG 3 cut(s) 564, 730, 999
Tth111I GACNNNGTC 1 cut(s) 649
VpaK11BI GGWCC 1 cut(s) 839
XmnI GAANNNNTTC 1 cut(s) 359
XspI CTAG 5 cut(s) 291, 339, 455, 696, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.