Rh7BG037200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0011434
Physical Location & Seq
Reverse (-)
2394544 .. 2396474
1931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG037200.1

Sequence Viewer

Length: 1068 bp
ATGGAAGAGCCCCAATCGTCCCAGTCTGCTCAATCCGGGAAGCTTCTGCGATACGCGCTGCGATCTGTGACTAAACCGAAGGAGGAGAAGCCACCGGCCGCAGAATTGTCCAACCCCTCTGCGTCTAAGAGGGGAAGGCCTGCATCAAATGTGAGCAGAAGCGTGAGTGTGCTTGATCTTTCGGGCAAGGACAAGCCTGTCAAGCCACCCAGGAGGCTCTCTGTTCCTAACAAGGCGGCTGGAACTCCAGCTCCGAAACTGGGTGGGAACATCACTCCCATTTCCGAGGCTAGATCAAGGCGGTCTGCGAAAAGCGAAACGCCTGCTTCTGATGCTTCTAGGCTGACAAGTCGGAAGAAGTTCAGTATTCTGTCCTCAGAGTCATACTGGCTTTCGCAGATTAAGCTGTCCGAGGCTGCTGGCGGCAAGCACTCAGTTTCACTTGGGTTTTTCAAACTAGCCTTGGAGGCGGGATGTGAGCAACCTCTTCAGCGATTGCGAGATGAGCTAAAAAGCTATGCACTTCGTCATAAACTTGGTGATGCTGACCTTGCAGTCCCACTGAAAGAGTTATTTGAGAGCTACGGTGTTGTAGAAAACGAGCAGTTGCAGGTCTCCGAAACCTGTTCCCACGTACCTGAAGAGGGGACTCGGTCTTCTGATGAAGATGCCAAGAGCTCTTCATCTACAATGGGAACTAGGAAACTGAAACCCAAGTCGTTGAACACTGATGCTGCTCAAGTTTCTCCGGTCAAAAACAAAGCCAAGAAGGAAATGCCTCAGAAGAGCACTCCTGCAACCAGGACTAGGGCATCATCTGTGGCAAAGAAGTCTTCAACTCCAGGACCTGTTTCTGACTCTGGGATGCGCAGGTCAACAGCAAAGAAACCCCAGAACCCGATTAAGCAAGAAGCTAAGAATGAAAGGGATAGGAAGAAGCAGGGGAACAAATCTGCTGTTGAACAAGGCTCAGTTAGCGCTACATCTGCAGAGGAAGCACTCAATGAGAACAAAGAAAATGAGGATGCTGCCTCAATGGAGGAGATAAGTTTGACTGAAGTTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

38.22

Weight (kDa)

9.71

Isoelectric Point (pI)

65.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62550
fragaria_vesca FvH4_5g15300 FvH4_5g15300 FvH4_5g15300
malus_domestica MD01G1041800.v1.1 MD06G1189400.v1.1 MD14G1196400.v1.1
prunus_persica Prupe.5G188200_v2.0.a1
pyrus_communis pycom06g16830 pycom14g16310
rosa_chinensis RchiOBHm_Chr7g0180761
rosa_laevigata RLG00000005232
rosa_multiflora Rmu_sc0007457.1_g000012
rosa_roxburghii Rroxscaffold_3G00272560
rosa_rugosa Rorug06G0435800
rosa_samantha Rh7AG037500 Rh7BG037200 Rh7CG038900 Rh7DG037400
rosa_wichuraiana Rw7G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 197, 554
Acc16I TGCGCA 1 cut(s) 869
Acc36I ACCTGC 2 cut(s) 601, 861
AccII CGCG 1 cut(s) 56
AciI CCGC 5 cut(s) 99, 236, 301, 423, 470
AcoI YGGCCR 1 cut(s) 96
AcuI CTGAAG 2 cut(s) 473, 660
AfaI GTAC 1 cut(s) 636
AfeI AGCGCT 1 cut(s) 979
AfiI CCNNNNNNNGG 3 cut(s) 260, 644, 807
AgsI TTSAA 4 cut(s) 454, 724, 837, 962
AjnI CCWGG 3 cut(s) 209, 800, 841
AloI GAACNNNNNNTCC 2 cut(s) 235, 267
AluBI AGCT 8 cut(s) 43, 251, 406, 508, 516, 582, 678, 914
AluI AGCT 8 cut(s) 43, 251, 406, 508, 516, 582, 678, 914
Alw21I GWGCWC 2 cut(s) 680, 791
Alw26I GTCTC 1 cut(s) 619
AlwNI CAGNNNCTG 1 cut(s) 848
Aor51HI AGCGCT 1 cut(s) 979
AoxI GGCC 2 cut(s) 96, 137
ApeKI GCWGC 4 cut(s) 58, 416, 734, 1028
Asp700I GAANNNNTTC 1 cut(s) 359
AspLEI GCGC 3 cut(s) 58, 870, 980
AspS9I GGNCC 1 cut(s) 845
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 551
AvaII GGWCC 1 cut(s) 845
BanII GRGCYC 2 cut(s) 12, 680
BbsI GAAGAC 2 cut(s) 648, 825
Bbv12I GWGCWC 2 cut(s) 680, 791
BbvI GCAGC 4 cut(s) 45, 403, 721, 1015
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 3 cut(s) 211, 802, 843
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 619
BfaI CTAG 5 cut(s) 291, 339, 458, 699, 807
BfmI CTRYAG 1 cut(s) 987
BfoI RGCGCY 1 cut(s) 981
BfuAI ACCTGC 2 cut(s) 601, 861
BglI GCCNNNNNGGC 1 cut(s) 467
BisI GCNGC 7 cut(s) 59, 99, 237, 417, 424, 735, 1029
BlsI GCNGC 7 cut(s) 60, 100, 238, 418, 425, 736, 1030
Bme1390I CCNGG 4 cut(s) 37, 211, 802, 843
Bme18I GGWCC 1 cut(s) 845
BmgT120I GGNCC 1 cut(s) 845
BmrFI CCNGG 4 cut(s) 37, 211, 802, 843
BmrI ACTGGG 2 cut(s) 16, 269
BmsI GCATC 8 cut(s) 152, 322, 532, 658, 721, 821, 855, 1015
BmuI ACTGGG 2 cut(s) 16, 269
BpiI GAAGAC 2 cut(s) 648, 825
BpmI CTGGAG 2 cut(s) 231, 825
BpuEI CTTGAG 1 cut(s) 723
BpuMI CCSGG 1 cut(s) 37
BsaAI YACGTR 1 cut(s) 634
BsaI GGTCTC 1 cut(s) 619
BsaJI CCNNGG 4 cut(s) 209, 285, 411, 462
BsaWI WCCGGW 1 cut(s) 748
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 644, 807
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 3 cut(s) 22, 264, 392
BseBI CCWGG 3 cut(s) 211, 802, 843
BseDI CCNNGG 4 cut(s) 209, 285, 411, 462
BseGI GGATG 3 cut(s) 479, 870, 1030
BseLI CCNNNNNNNGG 3 cut(s) 260, 644, 807
BseMII CTCAG 4 cut(s) 390, 447, 794, 984
BseNI ACTGG 3 cut(s) 22, 264, 392
BseRI GAGGAG 2 cut(s) 98, 1055
BseX3I CGGCCG 1 cut(s) 96
BseXI GCAGC 4 cut(s) 45, 403, 721, 1015
Bsh1236I CGCG 1 cut(s) 56
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 2 cut(s) 98, 139
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 2 cut(s) 680, 791
BsiSI CCGG 3 cut(s) 36, 95, 749
BslFI GGGAC 3 cut(s) 4, 542, 661
BslI CCNNNNNNNGG 3 cut(s) 260, 644, 807
BsmAI GTCTC 1 cut(s) 619
BsmFI GGGAC 3 cut(s) 4, 542, 661
BsnI GGCC 2 cut(s) 98, 139
Bso31I GGTCTC 1 cut(s) 619
Bsp1286I GDGCHC 3 cut(s) 12, 680, 791
Bsp143I GATC 3 cut(s) 62, 175, 293
BspACI CCGC 5 cut(s) 99, 236, 301, 423, 470
BspANI GGCC 2 cut(s) 98, 139
BspCNI CTCAG 4 cut(s) 389, 446, 793, 983
BspFNI CGCG 1 cut(s) 56
BspMAI CTGCAG 1 cut(s) 991
BspMI ACCTGC 2 cut(s) 601, 861
BspQI GCTCTTC 2 cut(s) 685, 779
BspTNI GGTCTC 1 cut(s) 619
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 3 cut(s) 22, 264, 392
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 4 cut(s) 209, 285, 411, 462
BssMI GATC 3 cut(s) 62, 175, 293
BssT1I CCWWGG 1 cut(s) 462
Bst2UI CCWGG 3 cut(s) 211, 802, 843
Bst4CI ACNGT 1 cut(s) 587
Bst6I CTCTTC 4 cut(s) 492, 636, 685, 779
BstBAI YACGTR 1 cut(s) 634
BstC8I GCNNGC 4 cut(s) 141, 324, 421, 428
BstDEI CTNAG 6 cut(s) 126, 376, 433, 780, 915, 970
BstF5I GGATG 3 cut(s) 479, 870, 1030
BstFNI CGCG 1 cut(s) 56
BstH2I RGCGCY 1 cut(s) 981
BstHHI GCGC 3 cut(s) 58, 870, 980
BstKTI GATC 3 cut(s) 65, 178, 296
BstMAI GTCTC 1 cut(s) 619
BstMBI GATC 3 cut(s) 62, 175, 293
BstMCI CGRYCG 1 cut(s) 99
BstNI CCWGG 3 cut(s) 211, 802, 843
BstSCI CCNGG 4 cut(s) 35, 209, 800, 841
BstSFI CTRYAG 1 cut(s) 987
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 4 cut(s) 45, 403, 721, 1015
BstV2I GAAGAC 2 cut(s) 648, 825
BstZI CGGCCG 1 cut(s) 96
BsuRI GGCC 2 cut(s) 98, 139
BtsCI GGATG 3 cut(s) 479, 870, 1030
BtsIMutI CAGTG 2 cut(s) 560, 726
BveI ACCTGC 2 cut(s) 601, 861
Cac8I GCNNGC 4 cut(s) 141, 324, 421, 428
CaiI CAGNNNCTG 1 cut(s) 848
CfoI GCGC 3 cut(s) 58, 870, 980
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 845
CseI GACGC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 635
CviQI GTAC 1 cut(s) 635
DdeI CTNAG 6 cut(s) 126, 376, 433, 780, 915, 970
DpnI GATC 3 cut(s) 64, 177, 295
DpnII GATC 3 cut(s) 62, 175, 293
DrdI GACNNNNNNGTC 2 cut(s) 197, 554
DseDI GACNNNNNNGTC 2 cut(s) 197, 554
EaeI YGGCCR 1 cut(s) 96
EagI CGGCCG 1 cut(s) 96
Eam1104I CTCTTC 4 cut(s) 492, 636, 685, 779
EarI CTCTTC 4 cut(s) 492, 636, 685, 779
Ecl136II GAGCTC 1 cut(s) 678
EclXI CGGCCG 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 462
Eco147I AGGCCT 1 cut(s) 139
Eco24I GRGCYC 2 cut(s) 12, 680
Eco31I GGTCTC 1 cut(s) 619
Eco47I GGWCC 1 cut(s) 845
Eco47III AGCGCT 1 cut(s) 979
Eco52I CGGCCG 1 cut(s) 96
Eco53kI GAGCTC 1 cut(s) 678
Eco57I CTGAAG 2 cut(s) 473, 660
EcoICRI GAGCTC 1 cut(s) 678
EcoO109I RGGNCCY 1 cut(s) 845
EcoRII CCWGG 3 cut(s) 209, 800, 841
EcoT14I CCWWGG 1 cut(s) 462
EcoT38I GRGCYC 2 cut(s) 12, 680
ErhI CCWWGG 1 cut(s) 462
FaiI YATR 4 cut(s) 385, 519, 531, 1066
FaqI GGGAC 3 cut(s) 4, 542, 661
FauI CCCGC 1 cut(s) 463
Fnu4HI GCNGC 7 cut(s) 59, 99, 237, 417, 424, 735, 1029
FokI GGATG 3 cut(s) 486, 877, 1037
FriOI GRGCYC 2 cut(s) 12, 680
Fsp4HI GCNGC 7 cut(s) 59, 99, 237, 417, 424, 735, 1029
FspBI CTAG 5 cut(s) 291, 339, 458, 699, 807
FspI TGCGCA 1 cut(s) 869
GlaI GCGC 3 cut(s) 57, 869, 979
GluI GCNGC 7 cut(s) 59, 99, 237, 417, 424, 735, 1029
GsuI CTGGAG 2 cut(s) 231, 825
HaeII RGCGCY 1 cut(s) 981
HaeIII GGCC 2 cut(s) 98, 139
HapII CCGG 3 cut(s) 36, 95, 749
HgaI GACGC 1 cut(s) 111
HhaI GCGC 3 cut(s) 58, 870, 980
Hin6I GCGC 3 cut(s) 56, 868, 978
HinP1I GCGC 3 cut(s) 56, 868, 978
HincII GTYRAC 1 cut(s) 876
HindII GTYRAC 1 cut(s) 876
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 3 cut(s) 380, 649, 857
HpaII CCGG 3 cut(s) 36, 95, 749
HphI GGTGA 1 cut(s) 551
Hpy166II GTNNAC 1 cut(s) 876
Hpy8I GTNNAC 1 cut(s) 876
HpyAV CCTTC 3 cut(s) 73, 129, 763
HpyCH4III ACNGT 1 cut(s) 587
HpyCH4IV ACGT 1 cut(s) 633
HpyCH4V TGCA 7 cut(s) 143, 521, 554, 610, 797, 989, 1064
HpyF3I CTNAG 6 cut(s) 126, 376, 433, 780, 915, 970
HpySE526I ACGT 1 cut(s) 633
HspAI GCGC 3 cut(s) 56, 868, 978
Kzo9I GATC 3 cut(s) 62, 175, 293
LguI GCTCTTC 2 cut(s) 685, 779
LmnI GCTCC 1 cut(s) 256
Lsp1109I GCAGC 4 cut(s) 45, 403, 721, 1015
LweI GCATC 8 cut(s) 152, 322, 532, 658, 721, 821, 855, 1015
MaeI CTAG 5 cut(s) 291, 339, 458, 699, 807
MaeII ACGT 1 cut(s) 633
MaeIII GTNAC 1 cut(s) 67
MalI GATC 3 cut(s) 64, 177, 295
MboI GATC 3 cut(s) 62, 175, 293
MhlI GDGCHC 3 cut(s) 12, 680, 791
MluCI AATT 1 cut(s) 104
MlyI GAGTC 3 cut(s) 389, 643, 851
MmeI TCCRAC 2 cut(s) 135, 332
MroXI GAANNNNTTC 1 cut(s) 359
MseI TTAA 2 cut(s) 402, 903
MspI CCGG 3 cut(s) 36, 95, 749
MspR9I CCNGG 4 cut(s) 37, 211, 802, 843
MvaI CCWGG 3 cut(s) 211, 802, 843
MvnI CGCG 1 cut(s) 56
NciI CCSGG 1 cut(s) 37
NdeII GATC 3 cut(s) 62, 175, 293
NmuCI GTSAC 1 cut(s) 67
NsbI TGCGCA 1 cut(s) 869
PceI AGGCCT 1 cut(s) 139
PciSI GCTCTTC 2 cut(s) 685, 779
PdmI GAANNNNTTC 1 cut(s) 359
PflFI GACNNNGTC 1 cut(s) 652
PfoI TCCNGGA 2 cut(s) 35, 841
PkrI GCNGC 7 cut(s) 60, 100, 238, 418, 425, 736, 1030
PleI GAGTC 3 cut(s) 388, 643, 851
PpsI GAGTC 3 cut(s) 388, 643, 851
Ppu21I YACGTR 1 cut(s) 634
PpuMI RGGWCCY 1 cut(s) 845
Psp124BI GAGCTC 1 cut(s) 680
Psp5II RGGWCCY 1 cut(s) 845
Psp6I CCWGG 3 cut(s) 209, 800, 841
PspGI CCWGG 3 cut(s) 209, 800, 841
PspPI GGNCC 1 cut(s) 845
PspPPI RGGWCCY 1 cut(s) 845
PstI CTGCAG 1 cut(s) 991
PstNI CAGNNNCTG 1 cut(s) 848
PsyI GACNNNGTC 1 cut(s) 652
RsaI GTAC 1 cut(s) 636
RsaNI GTAC 1 cut(s) 635
SacI GAGCTC 1 cut(s) 680
SapI GCTCTTC 2 cut(s) 685, 779
SaqAI TTAA 2 cut(s) 402, 903
SatI GCNGC 7 cut(s) 59, 99, 237, 417, 424, 735, 1029
Sau3AI GATC 3 cut(s) 62, 175, 293
Sau96I GGNCC 1 cut(s) 845
SchI GAGTC 3 cut(s) 389, 643, 851
ScrFI CCNGG 4 cut(s) 37, 211, 802, 843
SduI GDGCHC 3 cut(s) 12, 680, 791
SfaNI GCATC 8 cut(s) 152, 322, 532, 658, 721, 821, 855, 1015
SfcI CTRYAG 1 cut(s) 987
SinI GGWCC 1 cut(s) 845
SmlI CTYRAG 1 cut(s) 738
SmoI CTYRAG 1 cut(s) 738
Sse9I AATT 1 cut(s) 104
SseBI AGGCCT 1 cut(s) 139
SsiI CCGC 5 cut(s) 99, 236, 301, 423, 470
SspMI CTAG 5 cut(s) 291, 339, 458, 699, 807
SstI GAGCTC 1 cut(s) 680
StuI AGGCCT 1 cut(s) 139
StyD4I CCNGG 4 cut(s) 35, 209, 800, 841
StyI CCWWGG 1 cut(s) 462
TaaI ACNGT 1 cut(s) 587
TaiI ACGT 1 cut(s) 636
TaqII GACCGA 1 cut(s) 642
TasI AATT 1 cut(s) 104
TauI GCSGC 3 cut(s) 101, 239, 426
Tru1I TTAA 2 cut(s) 402, 903
Tru9I TTAA 2 cut(s) 402, 903
TscAI CASTG 2 cut(s) 567, 733
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 4 cut(s) 58, 416, 734, 1028
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 3 cut(s) 672, 678, 936
TspRI CASTG 2 cut(s) 567, 733
Tth111I GACNNNGTC 1 cut(s) 652
VpaK11BI GGWCC 1 cut(s) 845
XmnI GAANNNNTTC 1 cut(s) 359
XspI CTAG 5 cut(s) 291, 339, 458, 699, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.