Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005504

Physical Location & Seq

Genomic Coordinates Reverse (-)

8718593 .. 8719878

Gene Structure 1286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCCAGCGGTGGACCCAATTGGGAAGGATTGCTGAAATGGAGCCTAGCTCATTCTGATGGGACTAGCCCTAGCCGCAGTTTAACCGAAGAGGACCGTAAGTGGTTCATGGAAGCAGTGCAAGAGCAGACCATCGATGTGGTGAAGCGAATGAAGGAGATCTCTCTAGTAATGCAAACTCCGGAGCATGTTTTGGAAGATCAAGGAGTTACTCCAGCTGACATTGAAGATATGTTAGATGAGTTGCAAGAGCATGTTGAGACCATTGACATGGCCAATGATCTTCACTCGATAGGCGGGTTGGTTCCATTACTTGATTACTTAAAGAACTCCAATGCTAATATTAGAGCAAAGGCTGCAGAAGTTGTGACCACTATTGTGCAGAACAATCCAAAGAGCCAGAAACTTGTTATGGAAGCAAATGGCTTTACATGTCTGTTTTCTTTGCTCAAATCTGATCCTGTGGTTAATGTCCGAACCAAAGCGCTAGGTGCAATCTCCTCTTTGATCCGGCACAACAAACCTGGTGTCATTGCCTTTCGCAAAGAAAACAATGCATATGAAGCCTTGCGAGATGGTCTAGCTTCTGAAAGTCCAAGATTTCAGAGGAAATCCCTGAGTTTGATCAACTACCTACTCCGCGAGAATAGTTCTGACTGCATCATAGTAAACAAGTTAGGAGTTCCAGGCCTAATGGTGCAGCTTGCCTCTAGTACAGATGTAGACGTGCGAGAAGGTGCACTCCAGGGCCTTCTTGTGCTAGCTAGAGGGAAAACTGAAGGGGTCATAGAAGATGAGAAATTGAAGCAAGTTCTCCGAAAACGAATTGAAGATGTTGGAGCAGGTAGGGAGGAGAGGCAGCTGGTAGACTCCTTGTGGGATGCATGCTACAACGAGCCATCTCCTCTTCGCGAGAATGGGTTTCTTGTGCTCCCTGGGGAAGATGCGCCACCACCTGATGTTGCAAGCAAGCATTTTGAACCTGCTCTTAGAGCACTGGCTCCAAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005488 GO:0005515 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010604 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031625 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0042176 GO:0043086 GO:0044092 GO:0044389 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901800 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Fes1

Protein Analysis

338

Amino Acids

37.19

Weight (kDa)

5.19

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fes1	PF08609	9 - 95	1.3e-11	Nucleotide exchange factor Fes1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09350 AT3G09350 AT3G09350 AT3G09350
fragaria_vesca	FvH4_5g15390 FvH4_6g11350
malus_domestica	MD04G1131900.v1.1 MD12G1145000.v1.1
prunus_persica	Prupe.6G258500_v2.0.a1
pyrus_communis	pycom04g12000 pycom12g13940
rosa_chinensis	RchiOBHm_Chr3g0462931 RchiOBHm_Chr7g0180681
rosa_laevigata	RLG00000005241 RLG00000024822
rosa_multiflora	Rmu_sc0000766.1_g000019 Rmu_sc0007457.1_g000030 Rmu_sc0023372.1_g000010
rosa_roxburghii	Rroxscaffold_3G00272660 Rroxscaffold_6G00417090
rosa_rugosa	Rorug03G0060000 Rorug06G0434900
rosa_samantha	Rh3DG123600 Rh7AG036500 Rh7BG036300 Rh7CG038000 Rh7DG036500
rosa_wichuraiana	Rw3G010030 Rw7G003010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	833, 991
AccI	GTMKAC	2 cut(s)	723, 867
AccII	CGCG	2 cut(s)	642, 912
AccIII	TCCGGA	1 cut(s)	181
AciI	CCGC	4 cut(s)	9, 76, 297, 640
AclWI	GGATC	2 cut(s)	452, 502
AcoI	YGGCCR	2 cut(s)	3, 273
AcuI	CTGAAG	1 cut(s)	798
AfaI	GTAC	1 cut(s)	715
AfeI	AGCGCT	1 cut(s)	486
AflIII	ACRYGT	1 cut(s)	431
AgsI	TTSAA	4 cut(s)	227, 805, 830, 980
AjiI	CACGTC	1 cut(s)	727
AjnI	CCWGG	4 cut(s)	523, 685, 744, 934
AleI	CACNNNNGTG	1 cut(s)	377
AluBI	AGCT	6 cut(s)	50, 218, 584, 703, 764, 862
AluI	AGCT	6 cut(s)	50, 218, 584, 703, 764, 862
Alw21I	GWGCWC	3 cut(s)	742, 933, 997
Alw26I	GTCTC	1 cut(s)	254
Alw44I	GTGCAC	1 cut(s)	738
AlwI	GGATC	2 cut(s)	452, 502
Aor13HI	TCCGGA	1 cut(s)	181
Aor51HI	AGCGCT	1 cut(s)	486
AoxI	GGCC	4 cut(s)	3, 273, 688, 748
ApaLI	GTGCAC	1 cut(s)	738
ApeKI	GCWGC	3 cut(s)	356, 700, 859
ArsI	GACNNNNNNTTYG	2 cut(s)	513, 545
AspLEI	GCGC	2 cut(s)	487, 949
AspS9I	GGNCC	3 cut(s)	14, 94, 748
AsuHPI	GGTGA	1 cut(s)	154
AsuNHI	GCTAGC	1 cut(s)	760
AvaII	GGWCC	2 cut(s)	14, 94
BaeGI	GKGCMC	1 cut(s)	742
BalI	TGGCCA	2 cut(s)	5, 275
Bbv12I	GWGCWC	3 cut(s)	742, 933, 997
BbvI	GCAGC	3 cut(s)	343, 712, 871
BccI	CCATC	4 cut(s)	53, 140, 569, 907
BciT130I	CCWGG	4 cut(s)	525, 687, 746, 936
BclI	TGATCA	1 cut(s)	624
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	9 cut(s)	47, 66, 72, 167, 488, 581, 711, 761, 765
BfmI	CTRYAG	1 cut(s)	357
BfoI	RGCGCY	1 cut(s)	488
BfuAI	ACCTGC	2 cut(s)	833, 991
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	4 cut(s)	76, 357, 701, 860
BlsI	GCNGC	4 cut(s)	77, 358, 702, 861
Bme1390I	CCNGG	4 cut(s)	525, 687, 746, 936
Bme18I	GGWCC	2 cut(s)	14, 94
BmgBI	CACGTC	1 cut(s)	727
BmgT120I	GGNCC	3 cut(s)	14, 94, 748
BmiI	GGNNCC	4 cut(s)	16, 44, 306, 1002
BmrFI	CCNGG	4 cut(s)	525, 687, 746, 936
BmsI	GCATC	3 cut(s)	669, 871, 934
BmtI	GCTAGC	1 cut(s)	764
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
BpmI	CTGGAG	2 cut(s)	198, 728
Bsa29I	ATCGAT	1 cut(s)	135
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	3 cut(s)	745, 934, 935
BsaWI	WCCGGW	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	1002
Bse3DI	GCAATG	1 cut(s)	531
BseAI	TCCGGA	1 cut(s)	181
BseBI	CCWGG	4 cut(s)	525, 687, 746, 936
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	3 cut(s)	745, 934, 935
BseGI	GGATG	1 cut(s)	886
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	1 cut(s)	608
BseNI	ACTGG	1 cut(s)	1002
BseRI	GAGGAG	3 cut(s)	490, 866, 894
BseSI	GKGCMC	1 cut(s)	742
BseXI	GCAGC	3 cut(s)	343, 712, 871
BsgI	GTGCAG	2 cut(s)	401, 719
Bsh1236I	CGCG	2 cut(s)	642, 912
BshFI	GGCC	4 cut(s)	5, 275, 690, 750
BshVI	ATCGAT	1 cut(s)	135
BsiHKAI	GWGCWC	3 cut(s)	742, 933, 997
BsiSI	CCGG	2 cut(s)	182, 511
BslFI	GGGAC	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	76
BsnI	GGCC	4 cut(s)	5, 275, 690, 750
Bso31I	GGTCTC	1 cut(s)	254
Bsp1286I	GDGCHC	3 cut(s)	742, 933, 997
Bsp13I	TCCGGA	1 cut(s)	181
Bsp143I	GATC	6 cut(s)	159, 199, 280, 457, 507, 624
Bsp68I	TCGCGA	1 cut(s)	912
BspACI	CCGC	4 cut(s)	9, 76, 297, 640
BspANI	GGCC	4 cut(s)	5, 275, 690, 750
BspCNI	CTCAG	1 cut(s)	609
BspDI	ATCGAT	1 cut(s)	135
BspEI	TCCGGA	1 cut(s)	181
BspFNI	CGCG	2 cut(s)	642, 912
BspLI	GGNNCC	4 cut(s)	16, 44, 306, 1002
BspMAI	CTGCAG	1 cut(s)	361
BspMI	ACCTGC	2 cut(s)	833, 991
BspOI	GCTAGC	1 cut(s)	764
BspPI	GGATC	2 cut(s)	452, 502
BspTNI	GGTCTC	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	1 cut(s)	1002
BssECI	CCNNGG	3 cut(s)	745, 934, 935
BssMI	GATC	6 cut(s)	159, 199, 280, 457, 507, 624
Bst2UI	CCWGG	4 cut(s)	525, 687, 746, 936
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	2 cut(s)	84, 912
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	6 cut(s)	7, 705, 762, 886, 967, 971
BstDEI	CTNAG	2 cut(s)	617, 989
BstF5I	GGATG	1 cut(s)	886
BstFNI	CGCG	2 cut(s)	642, 912
BstH2I	RGCGCY	1 cut(s)	488
BstHHI	GCGC	2 cut(s)	487, 949
BstKTI	GATC	6 cut(s)	162, 202, 283, 460, 510, 627
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	6 cut(s)	159, 199, 280, 457, 507, 624
BstMWI	GCNNNNNNNGC	5 cut(s)	75, 356, 491, 563, 992
BstNI	CCWGG	4 cut(s)	525, 687, 746, 936
BstNSI	RCATGY	4 cut(s)	191, 257, 435, 888
BstSCI	CCNGG	4 cut(s)	523, 685, 744, 934
BstSFI	CTRYAG	1 cut(s)	357
BstSLI	GKGCMC	1 cut(s)	742
BstUI	CGCG	2 cut(s)	642, 912
BstV1I	GCAGC	3 cut(s)	343, 712, 871
BstX2I	RGATCY	1 cut(s)	159
BstXI	CCANNNNNNTGG	2 cut(s)	139, 271
BstYI	RGATCY	1 cut(s)	159
Bsu15I	ATCGAT	1 cut(s)	135
BsuRI	GGCC	4 cut(s)	5, 275, 690, 750
BsuTUI	ATCGAT	1 cut(s)	135
BtrI	CACGTC	1 cut(s)	727
BtsCI	GGATG	1 cut(s)	886
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	2 cut(s)	123, 995
BtuMI	TCGCGA	1 cut(s)	912
BveI	ACCTGC	2 cut(s)	833, 991
Cac8I	GCNNGC	6 cut(s)	7, 705, 762, 886, 967, 971
CfoI	GCGC	2 cut(s)	487, 949
Cfr13I	GGNCC	3 cut(s)	14, 94, 748
ClaI	ATCGAT	1 cut(s)	135
CsiI	ACCWGGT	1 cut(s)	523
Csp6I	GTAC	1 cut(s)	714
CviAII	CATG	6 cut(s)	109, 188, 254, 271, 432, 885
CviQI	GTAC	1 cut(s)	714
DdeI	CTNAG	2 cut(s)	617, 989
DpnI	GATC	6 cut(s)	161, 201, 282, 459, 509, 626
DpnII	GATC	6 cut(s)	159, 199, 280, 457, 507, 624
EaeI	YGGCCR	2 cut(s)	3, 273
Eam1104I	CTCTTC	2 cut(s)	84, 912
EarI	CTCTTC	2 cut(s)	84, 912
Eco147I	AGGCCT	1 cut(s)	690
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	2 cut(s)	14, 94
Eco47III	AGCGCT	1 cut(s)	486
Eco57I	CTGAAG	1 cut(s)	798
EcoO109I	RGGNCCY	1 cut(s)	748
EcoRII	CCWGG	4 cut(s)	523, 685, 744, 934
EcoT22I	ATGCAT	2 cut(s)	559, 886
FaeI	CATG	6 cut(s)	112, 191, 257, 274, 435, 888
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	6 cut(s)	108, 187, 253, 270, 431, 884
FauI	CCCGC	1 cut(s)	290
FauNDI	CATATG	1 cut(s)	559
FbaI	TGATCA	1 cut(s)	624
FblI	GTMKAC	2 cut(s)	723, 867
Fnu4HI	GCNGC	4 cut(s)	76, 357, 701, 860
FokI	GGATG	1 cut(s)	893
Fsp4HI	GCNGC	4 cut(s)	76, 357, 701, 860
FspBI	CTAG	9 cut(s)	47, 66, 72, 167, 488, 581, 711, 761, 765
GlaI	GCGC	2 cut(s)	486, 948
GluI	GCNGC	4 cut(s)	76, 357, 701, 860
GsuI	CTGGAG	2 cut(s)	198, 728
HaeII	RGCGCY	1 cut(s)	488
HaeIII	GGCC	4 cut(s)	5, 275, 690, 750
HapII	CCGG	2 cut(s)	182, 511
HhaI	GCGC	2 cut(s)	487, 949
Hin1II	CATG	6 cut(s)	112, 191, 257, 274, 435, 888
Hin6I	GCGC	2 cut(s)	485, 947
HinP1I	GCGC	2 cut(s)	485, 947
HinfI	GANTC	1 cut(s)	869
HpaII	CCGG	2 cut(s)	182, 511
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	5 cut(s)	14, 670, 724, 740, 868
Hpy188I	TCNGA	7 cut(s)	58, 457, 476, 589, 606, 655, 818
Hpy188III	TCNNGA	2 cut(s)	182, 911
Hpy8I	GTNNAC	5 cut(s)	14, 670, 724, 740, 868
HpyAV	CCTTC	5 cut(s)	20, 148, 728, 761, 773
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	726
HpyF10VI	GCNNNNNNNGC	5 cut(s)	75, 356, 491, 563, 992
HpyF3I	CTNAG	2 cut(s)	617, 989
HpySE526I	ACGT	1 cut(s)	726
Hsp92II	CATG	6 cut(s)	112, 191, 257, 274, 435, 888
HspAI	GCGC	2 cut(s)	485, 947
Kpn2I	TCCGGA	1 cut(s)	181
Ksp22I	TGATCA	1 cut(s)	624
Kzo9I	GATC	6 cut(s)	159, 199, 280, 457, 507, 624
LmnI	GCTCC	5 cut(s)	42, 184, 839, 936, 1006
Lsp1109I	GCAGC	3 cut(s)	343, 712, 871
LweI	GCATC	3 cut(s)	669, 871, 934
MabI	ACCWGGT	1 cut(s)	523
MaeI	CTAG	9 cut(s)	47, 66, 72, 167, 488, 581, 711, 761, 765
MaeII	ACGT	1 cut(s)	726
MaeIII	GTNAC	2 cut(s)	208, 367
MalI	GATC	6 cut(s)	161, 201, 282, 459, 509, 626
MboI	GATC	6 cut(s)	159, 199, 280, 457, 507, 624
MboII	GAAGA	8 cut(s)	101, 209, 239, 275, 803, 842, 899, 953
MfeI	CAATTG	1 cut(s)	19
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	3 cut(s)	742, 933, 997
MlsI	TGGCCA	2 cut(s)	5, 275
MluCI	AATT	3 cut(s)	19, 800, 825
MluNI	TGGCCA	2 cut(s)	5, 275
MlyI	GAGTC	1 cut(s)	863
MmeI	TCCRAC	1 cut(s)	817
MnlI	CCTC	8 cut(s)	85, 511, 600, 718, 761, 844, 849, 915
Mox20I	TGGCCA	2 cut(s)	5, 275
Mph1103I	ATGCAT	2 cut(s)	559, 886
MroI	TCCGGA	1 cut(s)	181
MscI	TGGCCA	2 cut(s)	5, 275
MseI	TTAA	3 cut(s)	83, 323, 468
MslI	CAYNNNNRTG	4 cut(s)	57, 137, 269, 377
Msp20I	TGGCCA	2 cut(s)	5, 275
MspA1I	CMGCKG	3 cut(s)	9, 218, 862
MspI	CCGG	2 cut(s)	182, 511
MspR9I	CCNGG	4 cut(s)	525, 687, 746, 936
MunI	CAATTG	1 cut(s)	19
MvaI	CCWGG	4 cut(s)	525, 687, 746, 936
MvnI	CGCG	2 cut(s)	642, 912
MwoI	GCNNNNNNNGC	5 cut(s)	75, 356, 491, 563, 992
NdeI	CATATG	1 cut(s)	559
NdeII	GATC	6 cut(s)	159, 199, 280, 457, 507, 624
NheI	GCTAGC	1 cut(s)	760
NlaIII	CATG	6 cut(s)	112, 191, 257, 274, 435, 888
NlaIV	GGNNCC	4 cut(s)	16, 44, 306, 1002
NmuCI	GTSAC	1 cut(s)	367
NruI	TCGCGA	1 cut(s)	912
NsiI	ATGCAT	2 cut(s)	559, 886
NspI	RCATGY	4 cut(s)	191, 257, 435, 888
OliI	CACNNNNGTG	1 cut(s)	377
PaeI	GCATGC	1 cut(s)	888
PasI	CCCWGGG	1 cut(s)	935
PceI	AGGCCT	1 cut(s)	690
PciI	ACATGT	1 cut(s)	431
PkrI	GCNGC	4 cut(s)	77, 358, 702, 861
PleI	GAGTC	1 cut(s)	863
PpsI	GAGTC	1 cut(s)	863
PscI	ACATGT	1 cut(s)	431
Psp6I	CCWGG	4 cut(s)	523, 685, 744, 934
PspGI	CCWGG	4 cut(s)	523, 685, 744, 934
PspN4I	GGNNCC	4 cut(s)	16, 44, 306, 1002
PspPI	GGNCC	3 cut(s)	14, 94, 748
PstI	CTGCAG	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	159
PvuII	CAGCTG	2 cut(s)	218, 862
RruI	TCGCGA	1 cut(s)	912
RsaI	GTAC	1 cut(s)	715
RsaNI	GTAC	1 cut(s)	714
RseI	CAYNNNNRTG	4 cut(s)	57, 137, 269, 377
SaqAI	TTAA	3 cut(s)	83, 323, 468
SatI	GCNGC	4 cut(s)	76, 357, 701, 860
Sau3AI	GATC	6 cut(s)	159, 199, 280, 457, 507, 624
Sau96I	GGNCC	3 cut(s)	14, 94, 748
SchI	GAGTC	1 cut(s)	863
ScrFI	CCNGG	4 cut(s)	525, 687, 746, 936
SduI	GDGCHC	3 cut(s)	742, 933, 997
SexAI	ACCWGGT	1 cut(s)	523
SfaNI	GCATC	3 cut(s)	669, 871, 934
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	2 cut(s)	14, 94
SmiMI	CAYNNNNRTG	4 cut(s)	57, 137, 269, 377
SphI	GCATGC	1 cut(s)	888
Sse9I	AATT	3 cut(s)	19, 800, 825
SseBI	AGGCCT	1 cut(s)	690
SsiI	CCGC	4 cut(s)	9, 76, 297, 640
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	9 cut(s)	47, 66, 72, 167, 488, 581, 711, 761, 765
StuI	AGGCCT	1 cut(s)	690
StyD4I	CCNGG	4 cut(s)	523, 685, 744, 934
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	729
TaqI	TCGA	2 cut(s)	135, 290
TasI	AATT	3 cut(s)	19, 800, 825
TatI	WGTACW	1 cut(s)	713
TauI	GCSGC	1 cut(s)	78
Tru1I	TTAA	3 cut(s)	83, 323, 468
Tru9I	TTAA	3 cut(s)	83, 323, 468
TscAI	CASTG	2 cut(s)	123, 1002
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	3 cut(s)	356, 700, 859
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	3 cut(s)	97, 167, 576
TspRI	CASTG	2 cut(s)	123, 1002
VneI	GTGCAC	1 cut(s)	738
VpaK11BI	GGWCC	2 cut(s)	14, 94
XceI	RCATGY	4 cut(s)	191, 257, 435, 888
XmiI	GTMKAC	2 cut(s)	723, 867
XspI	CTAG	9 cut(s)	47, 66, 72, 167, 488, 581, 711, 761, 765
Zsp2I	ATGCAT	2 cut(s)	559, 886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.