Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0005504

Physical Location & Seq

Genomic Coordinates Reverse (-)

9605648 .. 9607831

Gene Structure 2184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G010030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCCGGAGACGCACCCAACTGGGATGGACTGCTCAAATGGAGTCTTGCCCACTCCGACGGCACTCGCCCTAATCGAAATTTGAGCGATGAGGATCGAAAATGGTTTATGGAAGCTATGCAAGCTCAGAGTGTTGACGTTGTAAAGAGGATGAAGGAAATAACTCTTGTGATGAAAACTCCTGAGGAGGTTTTGGAAGCTCAGGGAGTTACTGCTGCTGACATTGAAGATTTGTTGGATGAGTTGCAGGAGCATGTTGAGTCCATTGACATGGCCAATGATCTTCACTCCATTGGTGGTTTGGTCCCTCTACTCGATTATCTGAAGAACTCCCATGCTAATATTCGAGCCAAGGCTGCAGAAGTTGTGACCACGATTGTGCAGAACAATCCCAAGAGCCAACAACTGGTTATGGAAGCAAATGGCTTGGAATATTTGTATTCTTTGTTCACGTCCGACCCTGATGTCACTGTTCGCACCAAAGCTCTTGGTGCAATATCCTCTTTAATTCGGGACAACAAACCTGGTGTCATTGCATTTCGTCTAGCAAATGGCTATGCAGGCTTGAGAGATGCTTTATCTTCTGAAAGCGTGAGATTTCAGAGGAAAGCTCTGAACTTGATTTCTTACCTTCTGCGTGAGAATAGTTCTGATTGCAACATAATAAGTGACCTAGGATTTCCACGCATAATGGTGCACCTTGCCTCCAGCGAAGATCTAGAAGTGCGAGAAGCTGCACTCCGGGGCCTACTTGAGCTTGCTCGAGAAAAAACTGGTGGTGCCAAGGTGACACTAGCTGAAGAAGATGAGAAATTGAAGCAGCTTCTTGAAGACCGAATTAAAGGTATCAGTCTGATGTCTCCTGAAGATCTTGGAGCAGCTAGAGAGGAGAGGCAGCTGGTAGATTCCCTATGGGGTGCCTGCTATAAGGAGCCATCTTCTCTTCGTGAGAAGGGCTTCTTGTGCTTCCTGGGGAAGATGCACCGCCACCTGATGTTGCAAGCAAGCATTTTGAGCCTCCCCTTAGAGCATTCACTCCAAATCCTGCTCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005488 GO:0005515 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010604 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031625 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0042176 GO:0043086 GO:0044092 GO:0044389 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901800 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Fes1

Protein Analysis

351

Amino Acids

39.06

Weight (kDa)

5.19

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fes1	PF08609	9 - 95	1.7e-11	Nucleotide exchange factor Fes1
SIL1	PF16782	68 - 217	3.9e-06	Nucleotide exchange factor SIL1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09350 AT3G09350 AT3G09350 AT3G09350
fragaria_vesca	FvH4_5g15390 FvH4_6g11350
malus_domestica	MD04G1131900.v1.1 MD12G1145000.v1.1
prunus_persica	Prupe.6G258500_v2.0.a1
pyrus_communis	pycom04g12000 pycom12g13940
rosa_chinensis	RchiOBHm_Chr3g0462931 RchiOBHm_Chr7g0180681
rosa_laevigata	RLG00000005241 RLG00000024822
rosa_multiflora	Rmu_sc0000766.1_g000019 Rmu_sc0007457.1_g000030 Rmu_sc0023372.1_g000010
rosa_roxburghii	Rroxscaffold_3G00272660 Rroxscaffold_6G00417090
rosa_rugosa	Rorug03G0060000 Rorug06G0434900
rosa_samantha	Rh3DG123600 Rh7AG036500 Rh7BG036300 Rh7CG038000 Rh7DG036500
rosa_wichuraiana	Rw3G010030 Rw7G003010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	464
AccB1I	GGYRCC	2 cut(s)	779, 917
AccB7I	CCANNNNNTGG	1 cut(s)	406
AciI	CCGC	1 cut(s)	985
AclWI	GGATC	1 cut(s)	102
AcoI	YGGCCR	2 cut(s)	3, 273
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	3 cut(s)	344, 819, 885
AfiI	CCNNNNNNNGG	1 cut(s)	406
AgsI	TTSAA	3 cut(s)	227, 817, 830
AjiI	CACGTC	1 cut(s)	453
AjnI	CCWGG	2 cut(s)	523, 969
AleI	CACNNNNGTG	1 cut(s)	377
Alw21I	GWGCWC	1 cut(s)	699
Alw26I	GTCTC	2 cut(s)	3, 864
Alw44I	GTGCAC	1 cut(s)	695
AlwI	GGATC	1 cut(s)	102
Ama87I	CYCGRG	1 cut(s)	762
AoxI	GGCC	3 cut(s)	3, 273, 745
ApaLI	GTGCAC	1 cut(s)	695
ApeKI	GCWGC	6 cut(s)	215, 356, 734, 820, 878, 895
ApoI	RAATTY	1 cut(s)	79
ArsI	GACNNNNNNTTYG	2 cut(s)	513, 545
Asp700I	GAANNNNTTC	1 cut(s)	956
AspA2I	CCTAGG	1 cut(s)	673
AspS9I	GGNCC	2 cut(s)	304, 745
AsuC2I	CCSGG	1 cut(s)	743
AsuHPI	GGTGA	1 cut(s)	799
AvaI	CYCGRG	1 cut(s)	762
AvaII	GGWCC	1 cut(s)	304
AvrII	CCTAGG	1 cut(s)	673
AxyI	CCTNAGG	1 cut(s)	183
BaeGI	GKGCMC	1 cut(s)	699
BalI	TGGCCA	1 cut(s)	275
BanI	GGYRCC	2 cut(s)	779, 917
BbsI	GAAGAC	1 cut(s)	837
Bbv12I	GWGCWC	1 cut(s)	699
BbvI	GCAGC	6 cut(s)	202, 343, 721, 832, 890, 907
BccI	CCATC	2 cut(s)	20, 943
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	2 cut(s)	525, 971
BcnI	CCSGG	1 cut(s)	743
BcoDI	GTCTC	2 cut(s)	3, 864
BfaI	CTAG	5 cut(s)	545, 674, 719, 794, 882
BfmI	CTRYAG	1 cut(s)	357
BglII	AGATCT	2 cut(s)	715, 868
BisI	GCNGC	6 cut(s)	216, 357, 735, 821, 879, 896
BlnI	CCTAGG	1 cut(s)	673
BlsI	GCNGC	6 cut(s)	217, 358, 736, 822, 880, 897
Bme1390I	CCNGG	3 cut(s)	525, 743, 971
Bme18I	GGWCC	1 cut(s)	304
BmeT110I	CYCGRG	1 cut(s)	762
BmgBI	CACGTC	1 cut(s)	453
BmgT120I	GGNCC	2 cut(s)	304, 745
BmiI	GGNNCC	5 cut(s)	306, 746, 781, 919, 933
BmrFI	CCNGG	3 cut(s)	525, 743, 971
BmrI	ACTGGG	1 cut(s)	31
BmsI	GCATC	2 cut(s)	562, 969
BmuI	ACTGGG	1 cut(s)	31
BpiI	GAAGAC	1 cut(s)	837
BplI	GAGNNNNNCTC	2 cut(s)	595, 627
BpmI	CTGGAG	1 cut(s)	691
Bpu10I	CCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	2 cut(s)	586, 773
BpuMI	CCSGG	1 cut(s)	743
BsaBI	GATNNNNATC	1 cut(s)	93
BsaJI	CCNNGG	5 cut(s)	351, 673, 742, 783, 970
BsaXI	ACNNNNNCTCC	2 cut(s)	689, 719
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
Bse1I	ACTGG	3 cut(s)	26, 411, 778
Bse21I	CCTNAGG	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	531
Bse8I	GATNNNNATC	1 cut(s)	93
BseBI	CCWGG	2 cut(s)	525, 971
BseDI	CCNNGG	5 cut(s)	351, 673, 742, 783, 970
BseGI	GGATG	3 cut(s)	31, 156, 244
BseJI	GATNNNNATC	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	3 cut(s)	140, 174, 215
BseNI	ACTGG	3 cut(s)	26, 411, 778
BseRI	GAGGAG	2 cut(s)	200, 902
BseSI	GKGCMC	1 cut(s)	699
BseXI	GCAGC	6 cut(s)	202, 343, 721, 832, 890, 907
BsgI	GTGCAG	2 cut(s)	401, 720
BshFI	GGCC	3 cut(s)	5, 275, 747
BshNI	GGYRCC	2 cut(s)	779, 917
BsiHKAI	GWGCWC	1 cut(s)	699
BsiHKCI	CYCGRG	1 cut(s)	762
BsiSI	CCGG	2 cut(s)	6, 742
BslFI	GGGAC	2 cut(s)	290, 527
BslI	CCNNNNNNNGG	1 cut(s)	406
BsmAI	GTCTC	2 cut(s)	3, 864
BsmBI	CGTCTC	1 cut(s)	3
BsmFI	GGGAC	2 cut(s)	290, 527
BsmI	GAATGC	1 cut(s)	1030
BsnI	GGCC	3 cut(s)	5, 275, 747
BsoBI	CYCGRG	1 cut(s)	762
Bsp1286I	GDGCHC	1 cut(s)	699
Bsp143I	GATC	4 cut(s)	94, 280, 715, 868
BspACI	CCGC	1 cut(s)	985
BspANI	GGCC	3 cut(s)	5, 275, 747
BspCNI	CTCAG	3 cut(s)	139, 175, 214
BspLI	GGNNCC	5 cut(s)	306, 746, 781, 919, 933
BspMAI	CTGCAG	1 cut(s)	361
BspPI	GGATC	1 cut(s)	102
BspT107I	GGYRCC	2 cut(s)	779, 917
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	3 cut(s)	26, 411, 778
BssECI	CCNNGG	5 cut(s)	351, 673, 742, 783, 970
BssMI	GATC	4 cut(s)	94, 280, 715, 868
BssT1I	CCWWGG	3 cut(s)	351, 673, 783
Bst2UI	CCWGG	2 cut(s)	525, 971
Bst4CI	ACNGT	1 cut(s)	472
Bst6I	CTCTTC	1 cut(s)	948
BstC8I	GCNNGC	6 cut(s)	123, 562, 759, 922, 1002, 1006
BstDEI	CTNAG	4 cut(s)	126, 183, 201, 1024
BstF5I	GGATG	3 cut(s)	31, 156, 244
BstKTI	GATC	4 cut(s)	97, 283, 718, 871
BstMAI	GTCTC	2 cut(s)	3, 864
BstMBI	GATC	4 cut(s)	94, 280, 715, 868
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 122, 356, 491, 561, 963, 1014
BstNI	CCWGG	2 cut(s)	525, 971
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	3 cut(s)	523, 741, 969
BstSFI	CTRYAG	1 cut(s)	357
BstSLI	GKGCMC	1 cut(s)	699
BstV1I	GCAGC	6 cut(s)	202, 343, 721, 832, 890, 907
BstV2I	GAAGAC	1 cut(s)	837
BstX2I	RGATCY	2 cut(s)	715, 868
BstXI	CCANNNNNNTGG	1 cut(s)	271
BstYI	RGATCY	2 cut(s)	715, 868
Bsu36I	CCTNAGG	1 cut(s)	183
BsuRI	GGCC	3 cut(s)	5, 275, 747
BtgZI	GCGATG	1 cut(s)	102
BtrI	CACGTC	1 cut(s)	453
BtsCI	GGATG	3 cut(s)	31, 156, 244
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	6 cut(s)	123, 562, 759, 922, 1002, 1006
Cfr13I	GGNCC	2 cut(s)	304, 745
CseI	GACGC	1 cut(s)	20
CsiI	ACCWGGT	1 cut(s)	523
CviAII	CATG	3 cut(s)	254, 271, 335
DdeI	CTNAG	4 cut(s)	126, 183, 201, 1024
DpnI	GATC	4 cut(s)	96, 282, 717, 870
DpnII	GATC	4 cut(s)	94, 280, 715, 868
DrdI	GACNNNNNNGTC	1 cut(s)	464
DseDI	GACNNNNNNGTC	1 cut(s)	464
EaeI	YGGCCR	2 cut(s)	3, 273
Eam1104I	CTCTTC	1 cut(s)	948
EarI	CTCTTC	1 cut(s)	948
Eco130I	CCWWGG	3 cut(s)	351, 673, 783
Eco47I	GGWCC	1 cut(s)	304
Eco57I	CTGAAG	3 cut(s)	344, 819, 885
Eco81I	CCTNAGG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	762
EcoO109I	RGGNCCY	1 cut(s)	745
EcoRII	CCWGG	2 cut(s)	523, 969
EcoT14I	CCWWGG	3 cut(s)	351, 673, 783
ErhI	CCWWGG	3 cut(s)	351, 673, 783
Esp3I	CGTCTC	1 cut(s)	3
FaeI	CATG	3 cut(s)	257, 274, 338
FalI	AAGNNNNNCTT	2 cut(s)	944, 976
FaqI	GGGAC	2 cut(s)	290, 527
FatI	CATG	3 cut(s)	253, 270, 334
Fnu4HI	GCNGC	6 cut(s)	216, 357, 735, 821, 879, 896
FokI	GGATG	3 cut(s)	38, 163, 251
Fsp4HI	GCNGC	6 cut(s)	216, 357, 735, 821, 879, 896
FspBI	CTAG	5 cut(s)	545, 674, 719, 794, 882
GluI	GCNGC	6 cut(s)	216, 357, 735, 821, 879, 896
GsuI	CTGGAG	1 cut(s)	691
HaeIII	GGCC	3 cut(s)	5, 275, 747
HapII	CCGG	2 cut(s)	6, 742
HgaI	GACGC	1 cut(s)	20
Hin1II	CATG	3 cut(s)	257, 274, 338
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	3 cut(s)	43, 260, 905
HpaII	CCGG	2 cut(s)	6, 742
HphI	GGTGA	1 cut(s)	799
Hpy166II	GTNNAC	3 cut(s)	136, 450, 697
Hpy188I	TCNGA	9 cut(s)	58, 129, 324, 457, 586, 603, 615, 652, 855
Hpy188III	TCNNGA	7 cut(s)	182, 512, 719, 764, 827, 863, 947
Hpy8I	GTNNAC	3 cut(s)	136, 450, 697
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	3 cut(s)	148, 641, 946
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4IV	ACGT	2 cut(s)	138, 452
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 122, 356, 491, 561, 963, 1014
HpyF3I	CTNAG	4 cut(s)	126, 183, 201, 1024
HpySE526I	ACGT	2 cut(s)	138, 452
Hsp92II	CATG	3 cut(s)	257, 274, 338
Kzo9I	GATC	4 cut(s)	94, 280, 715, 868
LmnI	GCTCC	3 cut(s)	250, 875, 931
Lsp1109I	GCAGC	6 cut(s)	202, 343, 721, 832, 890, 907
LweI	GCATC	2 cut(s)	562, 969
MabI	ACCWGGT	1 cut(s)	523
MaeI	CTAG	5 cut(s)	545, 674, 719, 794, 882
MaeII	ACGT	2 cut(s)	138, 452
MaeIII	GTNAC	5 cut(s)	208, 367, 466, 668, 787
MalI	GATC	4 cut(s)	96, 282, 717, 870
MboI	GATC	4 cut(s)	94, 280, 715, 868
MflI	RGATCY	2 cut(s)	715, 868
MhlI	GDGCHC	1 cut(s)	699
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	4 cut(s)	79, 507, 812, 837
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	2 cut(s)	52, 269
MmeI	TCCRAC	3 cut(s)	81, 216, 480
Mox20I	TGGCCA	1 cut(s)	275
MroXI	GAANNNNTTC	1 cut(s)	956
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	2 cut(s)	506, 840
MslI	CAYNNNNRTG	3 cut(s)	269, 377, 692
Msp20I	TGGCCA	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	898
MspI	CCGG	2 cut(s)	6, 742
MspR9I	CCNGG	3 cut(s)	525, 743, 971
Mva1269I	GAATGC	1 cut(s)	1030
MvaI	CCWGG	2 cut(s)	525, 971
MwoI	GCNNNNNNNGC	7 cut(s)	11, 122, 356, 491, 561, 963, 1014
NciI	CCSGG	1 cut(s)	743
NdeII	GATC	4 cut(s)	94, 280, 715, 868
NlaIII	CATG	3 cut(s)	257, 274, 338
NlaIV	GGNNCC	5 cut(s)	306, 746, 781, 919, 933
NmuCI	GTSAC	4 cut(s)	367, 466, 668, 787
NspI	RCATGY	1 cut(s)	257
OliI	CACNNNNGTG	1 cut(s)	377
PaeR7I	CTCGAG	1 cut(s)	762
PcsI	WCGNNNNNNNCGW	1 cut(s)	73
PctI	GAATGC	1 cut(s)	1030
PdmI	GAANNNNTTC	1 cut(s)	956
PfeI	GAWTC	1 cut(s)	905
PflMI	CCANNNNNTGG	1 cut(s)	406
PkrI	GCNGC	6 cut(s)	217, 358, 736, 822, 880, 897
PleI	GAGTC	2 cut(s)	51, 268
PpsI	GAGTC	2 cut(s)	51, 268
Psp6I	CCWGG	2 cut(s)	523, 969
PspGI	CCWGG	2 cut(s)	523, 969
PspN4I	GGNNCC	5 cut(s)	306, 746, 781, 919, 933
PspPI	GGNCC	2 cut(s)	304, 745
PsrI	GAACNNNNNNTAC	2 cut(s)	431, 463
PstI	CTGCAG	1 cut(s)	361
PsuI	RGATCY	2 cut(s)	715, 868
PvuII	CAGCTG	1 cut(s)	898
RseI	CAYNNNNRTG	3 cut(s)	269, 377, 692
SaqAI	TTAA	2 cut(s)	506, 840
SatI	GCNGC	6 cut(s)	216, 357, 735, 821, 879, 896
Sau3AI	GATC	4 cut(s)	94, 280, 715, 868
Sau96I	GGNCC	2 cut(s)	304, 745
SchI	GAGTC	2 cut(s)	52, 269
ScrFI	CCNGG	3 cut(s)	525, 743, 971
SduI	GDGCHC	1 cut(s)	699
SexAI	ACCWGGT	1 cut(s)	523
SfaNI	GCATC	2 cut(s)	562, 969
SfcI	CTRYAG	1 cut(s)	357
Sfr274I	CTCGAG	1 cut(s)	762
SinI	GGWCC	1 cut(s)	304
SlaI	CTCGAG	1 cut(s)	762
SmiMI	CAYNNNNRTG	3 cut(s)	269, 377, 692
SmlI	CTYRAG	3 cut(s)	565, 752, 762
SmoI	CTYRAG	3 cut(s)	565, 752, 762
Sse9I	AATT	4 cut(s)	79, 507, 812, 837
SsiI	CCGC	1 cut(s)	985
SspI	AATATT	2 cut(s)	343, 434
SspMI	CTAG	5 cut(s)	545, 674, 719, 794, 882
StyD4I	CCNGG	3 cut(s)	523, 741, 969
StyI	CCWWGG	3 cut(s)	351, 673, 783
TaaI	ACNGT	1 cut(s)	472
TaiI	ACGT	2 cut(s)	141, 455
TaqI	TCGA	5 cut(s)	76, 97, 315, 346, 763
TaqII	GACCGA	1 cut(s)	849
TasI	AATT	4 cut(s)	79, 507, 812, 837
TfiI	GAWTC	1 cut(s)	905
Tru1I	TTAA	2 cut(s)	506, 840
Tru9I	TTAA	2 cut(s)	506, 840
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	4 cut(s)	367, 466, 668, 787
TseI	GCWGC	6 cut(s)	215, 356, 734, 820, 878, 895
Tsp45I	GTSAC	4 cut(s)	367, 466, 668, 787
TspDTI	ATGAA	2 cut(s)	167, 188
TspRI	CASTG	1 cut(s)	475
Van91I	CCANNNNNTGG	1 cut(s)	406
VneI	GTGCAC	1 cut(s)	695
VpaK11BI	GGWCC	1 cut(s)	304
XapI	RAATTY	1 cut(s)	79
XbaI	TCTAGA	1 cut(s)	718
XceI	RCATGY	1 cut(s)	257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XhoI	CTCGAG	1 cut(s)	762
XmaJI	CCTAGG	1 cut(s)	673
XmnI	GAANNNNTTC	1 cut(s)	956
XspI	CTAG	5 cut(s)	545, 674, 719, 794, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.