Rroxscaffold_6G00417090
HSP70 Family

Hsp70 nucleotide exchange factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
38920630 .. 38922655
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00417090.1

Sequence Viewer

Length: 1209 bp
ATGGCCGGAGACGCACCCAACTGGGATGGACTGCTCAAATGGAGTCTTGCCCACTCCGATGGCACTCGCCCTAATCGCAATTTGAGCGATGAGGATCGAAAATGGTTTATGGAAGCTATGCAAGCTCAGAGTATTGACGTTGTAAAGAGGATGAAGGAAATAACTCTTGTGATGAAAACTCCTGAGCAGGTTTTGGAGTCACAGGGAGTTACTGCTGCTGACATTGAAGATTTGTTGGATGAGTTGCAGGAGCATGTTGAGTCCATTGACATGGCCAATGATCTTCACTCCATTGGTGGTTTGGTCCCTCTACTCGATTATCTGAAGAACTCCCATGCTAATATTCGAGCCAAGGCTGCAGAAGTTGTGACCACGATTGTGCAGAACAATCCCAAGAGCCAACAACTGGTTATGGAAGCAAATGGCTTGGAATATCTTTATTCTTTGTTCACGTCTGACCCTGACATCACTGTTCGCACCAAAGCTCTTGGTGCAATATCCTTTTTGGAAGCCACTGATTGCCATGCTCTGATGCTTTGCAAATGGATGACTCTTTCAGCTTTAATTCGGGACAACAAACCTGGTGTCATTGCATTTCGTCTAGCAAATGGTTATGCAGGCTTGAGAGATGCTTTGTCTTCCGAAAGCGTGAGATTTCAGAGGAAAGCTCTGAACTTGATTTCTTACCTTCTGCGCGAGAATAGTTCTGATTGCAACATAATAAGCGACCTAGGATTTCCACGCATAATGGTGCACCTTGCCTCCAGCGAAGATCTAGAAGTGCGAGAAGCTGCACTGCGGGGCCTACTTGAGCTTGCTCAAGAAAAAACTGGTAGTGCCAAGGTGACACTAGCTGAAGAAGATGAGAAATTGAAGCAGCTTCTTGAAGACCGAATTAAAGGTATCAGTCTGATGTCTCCTGAAGATCTTGGAGCAGCTAGAGAGGAGCGGCAGCTGGTAGATTCCCTGTGGGGTGCCTGCTTTAAGGAGCCATCTTCTCTTCGTGAGAAGGGGCTTCTTGTGCTTCCTGGGGAAGATGCACTGCCACCTGATGTTGCAAGCAAGCATTTTGAGCCTCCCCTTAGAGCATTCACCCCAAATCCTGCTCATATAAAACCTGATACTGAGAAGAAAGAAACTCCTCCACTGCTGCTAGGCGCAGGCCCTCCTCCCGAGGCTAGAGATGACTCCAATGGGAGGTTACAGTGA

Protein Analysis

402

Amino Acids

44.42

Weight (kDa)

4.98

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fes1 PF08609 9 - 95 2.1e-11 Nucleotide exchange factor Fes1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 178
AccB1I GGYRCC 1 cut(s) 974
AccB7I CCANNNNNTGG 1 cut(s) 406
AccBSI CCGCTC 1 cut(s) 949
AccII CGCG 1 cut(s) 696
AciI CCGC 2 cut(s) 799, 949
AclWI GGATC 1 cut(s) 102
AcoI YGGCCR 2 cut(s) 3, 273
AcuI CTGAAG 3 cut(s) 344, 876, 942
AfiI CCNNNNNNNGG 2 cut(s) 406, 1197
AgsI TTSAA 3 cut(s) 227, 874, 887
AjiI CACGTC 1 cut(s) 453
AjnI CCWGG 2 cut(s) 580, 1027
AleI CACNNNNGTG 1 cut(s) 377
Alw21I GWGCWC 1 cut(s) 756
Alw26I GTCTC 2 cut(s) 3, 921
Alw44I GTGCAC 1 cut(s) 752
AlwI GGATC 1 cut(s) 102
Ama87I CYCGRG 1 cut(s) 1172
AoxI GGCC 4 cut(s) 3, 273, 802, 1162
ApaLI GTGCAC 1 cut(s) 752
ApeKI GCWGC 7 cut(s) 215, 356, 791, 877, 935, 952, 1150
ArsI GACNNNNNNTTYG 2 cut(s) 570, 602
AspA2I CCTAGG 1 cut(s) 730
AspLEI GCGC 2 cut(s) 696, 1160
AspS9I GGNCC 3 cut(s) 304, 802, 1163
AsuHPI GGTGA 2 cut(s) 856, 1084
AvaI CYCGRG 1 cut(s) 1172
AvaII GGWCC 1 cut(s) 304
AvrII CCTAGG 1 cut(s) 730
BaeGI GKGCMC 1 cut(s) 756
BalI TGGCCA 1 cut(s) 275
BanI GGYRCC 1 cut(s) 974
BbsI GAAGAC 2 cut(s) 630, 894
Bbv12I GWGCWC 1 cut(s) 756
BbvI GCAGC 7 cut(s) 202, 343, 778, 889, 947, 964, 1137
BccI CCATC 3 cut(s) 20, 53, 1000
BciT130I CCWGG 2 cut(s) 582, 1029
BcoDI GTCTC 2 cut(s) 3, 921
BfaI CTAG 7 cut(s) 602, 731, 776, 851, 939, 1154, 1179
BfmI CTRYAG 1 cut(s) 357
BfuAI ACCTGC 1 cut(s) 178
BglII AGATCT 2 cut(s) 772, 925
BisI GCNGC 8 cut(s) 216, 357, 792, 878, 936, 950, 953, 1151
BlnI CCTAGG 1 cut(s) 730
BlsI GCNGC 8 cut(s) 217, 358, 793, 879, 937, 951, 954, 1152
Bme1390I CCNGG 2 cut(s) 582, 1029
Bme18I GGWCC 1 cut(s) 304
BmeT110I CYCGRG 1 cut(s) 1172
BmgBI CACGTC 1 cut(s) 453
BmgT120I GGNCC 3 cut(s) 304, 802, 1163
BmiI GGNNCC 4 cut(s) 306, 803, 976, 990
BmrFI CCNGG 2 cut(s) 582, 1029
BmrI ACTGGG 1 cut(s) 31
BmsI GCATC 3 cut(s) 522, 619, 1027
BmuI ACTGGG 1 cut(s) 31
BpiI GAAGAC 2 cut(s) 630, 894
BplI GAGNNNNNCTC 2 cut(s) 652, 684
BpmI CTGGAG 1 cut(s) 748
Bpu10I CCTNAGC 1 cut(s) 183
BpuEI CTTGAG 3 cut(s) 643, 804, 830
BsaBI GATNNNNATC 1 cut(s) 93
BsaJI CCNNGG 5 cut(s) 351, 730, 840, 1028, 1173
BsaXI ACNNNNNCTCC 2 cut(s) 746, 776
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 1197
Bse1I ACTGG 3 cut(s) 26, 411, 835
Bse3DI GCAATG 1 cut(s) 588
Bse8I GATNNNNATC 1 cut(s) 93
BseBI CCWGG 2 cut(s) 582, 1029
BseDI CCNNGG 5 cut(s) 351, 730, 840, 1028, 1173
BseGI GGATG 4 cut(s) 31, 156, 244, 552
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 2 cut(s) 406, 1197
BseMI GCAATG 1 cut(s) 588
BseMII CTCAG 3 cut(s) 140, 174, 1116
BseNI ACTGG 3 cut(s) 26, 411, 835
BseRI GAGGAG 3 cut(s) 959, 1131, 1158
BseSI GKGCMC 1 cut(s) 756
BseXI GCAGC 7 cut(s) 202, 343, 778, 889, 947, 964, 1137
BsgI GTGCAG 2 cut(s) 401, 777
Bsh1236I CGCG 1 cut(s) 696
BshFI GGCC 4 cut(s) 5, 275, 804, 1164
BshNI GGYRCC 1 cut(s) 974
BsiHKAI GWGCWC 1 cut(s) 756
BsiHKCI CYCGRG 1 cut(s) 1172
BsiSI CCGG 1 cut(s) 6
BslFI GGGAC 2 cut(s) 290, 584
BslI CCNNNNNNNGG 2 cut(s) 406, 1197
BsmAI GTCTC 2 cut(s) 3, 921
BsmBI CGTCTC 1 cut(s) 3
BsmFI GGGAC 2 cut(s) 290, 584
BsmI GAATGC 1 cut(s) 1088
BsnI GGCC 4 cut(s) 5, 275, 804, 1164
BsoBI CYCGRG 1 cut(s) 1172
Bsp1286I GDGCHC 1 cut(s) 756
Bsp143I GATC 4 cut(s) 94, 280, 772, 925
BspACI CCGC 2 cut(s) 799, 949
BspANI GGCC 4 cut(s) 5, 275, 804, 1164
BspCNI CTCAG 3 cut(s) 139, 175, 1117
BspFNI CGCG 1 cut(s) 696
BspLI GGNNCC 4 cut(s) 306, 803, 976, 990
BspMAI CTGCAG 1 cut(s) 361
BspMI ACCTGC 1 cut(s) 178
BspPI GGATC 1 cut(s) 102
BspT107I GGYRCC 1 cut(s) 974
BsrBI CCGCTC 1 cut(s) 949
BsrDI GCAATG 1 cut(s) 588
BsrI ACTGG 3 cut(s) 26, 411, 835
BssECI CCNNGG 5 cut(s) 351, 730, 840, 1028, 1173
BssMI GATC 4 cut(s) 94, 280, 772, 925
BssT1I CCWWGG 3 cut(s) 351, 730, 840
Bst2UI CCWGG 2 cut(s) 582, 1029
Bst4CI ACNGT 2 cut(s) 472, 1206
Bst6I CTCTTC 1 cut(s) 1005
BstC8I GCNNGC 7 cut(s) 123, 619, 816, 979, 1060, 1064, 1162
BstDEI CTNAG 4 cut(s) 126, 183, 1082, 1125
BstF5I GGATG 4 cut(s) 31, 156, 244, 552
BstFNI CGCG 1 cut(s) 696
BstHHI GCGC 2 cut(s) 696, 1160
BstKTI GATC 4 cut(s) 97, 283, 775, 928
BstMAI GTCTC 2 cut(s) 3, 921
BstMBI GATC 4 cut(s) 94, 280, 772, 925
BstMWI GCNNNNNNNGC 8 cut(s) 11, 75, 84, 122, 356, 491, 1021, 1072
BstNI CCWGG 2 cut(s) 582, 1029
BstNSI RCATGY 1 cut(s) 257
BstSCI CCNGG 2 cut(s) 580, 1027
BstSFI CTRYAG 1 cut(s) 357
BstSLI GKGCMC 1 cut(s) 756
BstUI CGCG 1 cut(s) 696
BstV1I GCAGC 7 cut(s) 202, 343, 778, 889, 947, 964, 1137
BstV2I GAAGAC 2 cut(s) 630, 894
BstX2I RGATCY 2 cut(s) 772, 925
BstXI CCANNNNNNTGG 2 cut(s) 59, 271
BstYI RGATCY 2 cut(s) 772, 925
BsuRI GGCC 4 cut(s) 5, 275, 804, 1164
BtgZI GCGATG 1 cut(s) 102
BtrI CACGTC 1 cut(s) 453
BtsCI GGATG 4 cut(s) 31, 156, 244, 552
BtsI GCAGTG 3 cut(s) 794, 1040, 1145
BtsIMutI CAGTG 5 cut(s) 468, 513, 794, 1040, 1145
BveI ACCTGC 1 cut(s) 178
Cac8I GCNNGC 7 cut(s) 123, 619, 816, 979, 1060, 1064, 1162
CfoI GCGC 2 cut(s) 696, 1160
Cfr13I GGNCC 3 cut(s) 304, 802, 1163
CseI GACGC 1 cut(s) 20
CsiI ACCWGGT 1 cut(s) 580
CviAII CATG 4 cut(s) 254, 271, 335, 524
DdeI CTNAG 4 cut(s) 126, 183, 1082, 1125
DpnI GATC 4 cut(s) 96, 282, 774, 927
DpnII GATC 4 cut(s) 94, 280, 772, 925
EaeI YGGCCR 2 cut(s) 3, 273
Eam1104I CTCTTC 1 cut(s) 1005
EarI CTCTTC 1 cut(s) 1005
Eco130I CCWWGG 3 cut(s) 351, 730, 840
Eco47I GGWCC 1 cut(s) 304
Eco57I CTGAAG 3 cut(s) 344, 876, 942
Eco88I CYCGRG 1 cut(s) 1172
EcoO109I RGGNCCY 2 cut(s) 802, 1163
EcoRII CCWGG 2 cut(s) 580, 1027
EcoT14I CCWWGG 3 cut(s) 351, 730, 840
ErhI CCWWGG 3 cut(s) 351, 730, 840
Esp3I CGTCTC 1 cut(s) 3
FaeI CATG 4 cut(s) 257, 274, 338, 527
FaqI GGGAC 2 cut(s) 290, 584
FatI CATG 4 cut(s) 253, 270, 334, 523
FauI CCCGC 1 cut(s) 792
Fnu4HI GCNGC 8 cut(s) 216, 357, 792, 878, 936, 950, 953, 1151
FokI GGATG 4 cut(s) 38, 163, 251, 559
Fsp4HI GCNGC 8 cut(s) 216, 357, 792, 878, 936, 950, 953, 1151
FspBI CTAG 7 cut(s) 602, 731, 776, 851, 939, 1154, 1179
GlaI GCGC 2 cut(s) 695, 1159
GluI GCNGC 8 cut(s) 216, 357, 792, 878, 936, 950, 953, 1151
GsuI CTGGAG 1 cut(s) 748
HaeIII GGCC 4 cut(s) 5, 275, 804, 1164
HapII CCGG 1 cut(s) 6
HgaI GACGC 1 cut(s) 20
HhaI GCGC 2 cut(s) 696, 1160
Hin1II CATG 4 cut(s) 257, 274, 338, 527
Hin6I GCGC 2 cut(s) 694, 1158
HinP1I GCGC 2 cut(s) 694, 1158
HinfI GANTC 6 cut(s) 43, 197, 260, 550, 962, 1187
HpaII CCGG 1 cut(s) 6
HphI GGTGA 2 cut(s) 856, 1084
Hpy166II GTNNAC 2 cut(s) 450, 754
Hpy188III TCNNGA 8 cut(s) 182, 569, 776, 821, 884, 920, 1004, 1172
Hpy8I GTNNAC 2 cut(s) 450, 754
HpyAV CCTTC 3 cut(s) 148, 698, 1003
HpyCH4III ACNGT 2 cut(s) 472, 1206
HpyCH4IV ACGT 2 cut(s) 138, 452
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 75, 84, 122, 356, 491, 1021, 1072
HpyF3I CTNAG 4 cut(s) 126, 183, 1082, 1125
HpySE526I ACGT 2 cut(s) 138, 452
Hsp92II CATG 4 cut(s) 257, 274, 338, 527
HspAI GCGC 2 cut(s) 694, 1158
Kzo9I GATC 4 cut(s) 94, 280, 772, 925
LmnI GCTCC 4 cut(s) 250, 932, 946, 988
Lsp1109I GCAGC 7 cut(s) 202, 343, 778, 889, 947, 964, 1137
LweI GCATC 3 cut(s) 522, 619, 1027
MabI ACCWGGT 1 cut(s) 580
MaeI CTAG 7 cut(s) 602, 731, 776, 851, 939, 1154, 1179
MaeII ACGT 2 cut(s) 138, 452
MaeIII GTNAC 5 cut(s) 198, 208, 367, 844, 1200
MalI GATC 4 cut(s) 96, 282, 774, 927
MbiI CCGCTC 1 cut(s) 949
MboI GATC 4 cut(s) 94, 280, 772, 925
MflI RGATCY 2 cut(s) 772, 925
MhlI GDGCHC 1 cut(s) 756
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 4 cut(s) 79, 564, 869, 894
MluNI TGGCCA 1 cut(s) 275
MlyI GAGTC 5 cut(s) 52, 206, 269, 544, 1181
MmeI TCCRAC 1 cut(s) 216
Mox20I TGGCCA 1 cut(s) 275
MscI TGGCCA 1 cut(s) 275
MseI TTAA 3 cut(s) 563, 897, 984
MslI CAYNNNNRTG 4 cut(s) 57, 269, 377, 749
Msp20I TGGCCA 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 955
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 2 cut(s) 582, 1029
Mva1269I GAATGC 1 cut(s) 1088
MvaI CCWGG 2 cut(s) 582, 1029
MvnI CGCG 1 cut(s) 696
MwoI GCNNNNNNNGC 8 cut(s) 11, 75, 84, 122, 356, 491, 1021, 1072
NdeII GATC 4 cut(s) 94, 280, 772, 925
NlaIII CATG 4 cut(s) 257, 274, 338, 527
NlaIV GGNNCC 4 cut(s) 306, 803, 976, 990
NmuCI GTSAC 3 cut(s) 198, 367, 844
NspI RCATGY 1 cut(s) 257
OliI CACNNNNGTG 1 cut(s) 377
PctI GAATGC 1 cut(s) 1088
PfeI GAWTC 1 cut(s) 962
PflMI CCANNNNNTGG 1 cut(s) 406
PkrI GCNGC 8 cut(s) 217, 358, 793, 879, 937, 951, 954, 1152
PleI GAGTC 5 cut(s) 51, 205, 268, 544, 1181
PpsI GAGTC 5 cut(s) 51, 205, 268, 544, 1181
Psp6I CCWGG 2 cut(s) 580, 1027
PspGI CCWGG 2 cut(s) 580, 1027
PspN4I GGNNCC 4 cut(s) 306, 803, 976, 990
PspPI GGNCC 3 cut(s) 304, 802, 1163
PstI CTGCAG 1 cut(s) 361
PsuI RGATCY 2 cut(s) 772, 925
PvuII CAGCTG 1 cut(s) 955
RseI CAYNNNNRTG 4 cut(s) 57, 269, 377, 749
SaqAI TTAA 3 cut(s) 563, 897, 984
SatI GCNGC 8 cut(s) 216, 357, 792, 878, 936, 950, 953, 1151
Sau3AI GATC 4 cut(s) 94, 280, 772, 925
Sau96I GGNCC 3 cut(s) 304, 802, 1163
SchI GAGTC 5 cut(s) 52, 206, 269, 544, 1181
ScrFI CCNGG 2 cut(s) 582, 1029
SduI GDGCHC 1 cut(s) 756
SexAI ACCWGGT 1 cut(s) 580
SfaNI GCATC 3 cut(s) 522, 619, 1027
SfcI CTRYAG 1 cut(s) 357
SinI GGWCC 1 cut(s) 304
SmiMI CAYNNNNRTG 4 cut(s) 57, 269, 377, 749
SmlI CTYRAG 3 cut(s) 622, 809, 819
SmoI CTYRAG 3 cut(s) 622, 809, 819
Sse9I AATT 4 cut(s) 79, 564, 869, 894
SsiI CCGC 2 cut(s) 799, 949
SspI AATATT 1 cut(s) 343
SspMI CTAG 7 cut(s) 602, 731, 776, 851, 939, 1154, 1179
StyD4I CCNGG 2 cut(s) 580, 1027
StyI CCWWGG 3 cut(s) 351, 730, 840
TaaI ACNGT 2 cut(s) 472, 1206
TaiI ACGT 2 cut(s) 141, 455
TaqI TCGA 3 cut(s) 97, 315, 346
TaqII GACCGA 1 cut(s) 906
TasI AATT 4 cut(s) 79, 564, 869, 894
TauI GCSGC 1 cut(s) 952
TfiI GAWTC 1 cut(s) 962
Tru1I TTAA 3 cut(s) 563, 897, 984
Tru9I TTAA 3 cut(s) 563, 897, 984
TscAI CASTG 5 cut(s) 475, 520, 801, 1047, 1152
TseFI GTSAC 3 cut(s) 198, 367, 844
TseI GCWGC 7 cut(s) 215, 356, 791, 877, 935, 952, 1150
Tsp45I GTSAC 3 cut(s) 198, 367, 844
TspDTI ATGAA 2 cut(s) 167, 188
TspRI CASTG 5 cut(s) 475, 520, 801, 1047, 1152
Van91I CCANNNNNTGG 1 cut(s) 406
VneI GTGCAC 1 cut(s) 752
VpaK11BI GGWCC 1 cut(s) 304
XbaI TCTAGA 1 cut(s) 775
XceI RCATGY 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XmaJI CCTAGG 1 cut(s) 730
XspI CTAG 7 cut(s) 602, 731, 776, 851, 939, 1154, 1179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.