Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005504

Physical Location & Seq

Genomic Coordinates Forward (+)

16400921 .. 16403106

Gene Structure 2186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g13940.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGATAATATTTAAACTGTTAAACAGTCCCTCAAGGCGGCAAGGCCCAGCAACTCGTCTCTTCTTTTCAGTCGTAGAATATCTCAAAAATTCCAGAACGTTCTGGAGGTTTCAGGAACTTCAAGTCCGAGCGGTGCTGTATCCCCTCGACCCTTCATCCTATAAAACTCTCCCGCTCCTTGAAACCGTTTCGTTCATAGTTTCTCGTTCGTTCATTTATCAGCAGAGAAGAGAAAGCCAGAGATTTTTTTTAAGGTTTTGGGTTTTTGTTTCCGACGAAGCAACAATGGCGGACGGCGGACCCAACTGGGAAGGACTGCTCAAATGGAGCCTCGCTCACTCCGATGGCACTCCCCCCAATCGCAATTTGAGCGAGGAGGAACGGAAGTGGTTTATGGAAGCGATGCAGTCGCAGAGTATCGATGTTGTAAAGAGGATGAAGGAGATATCGCTTGTAATGCAGACTCCTGAGGACGTCTTGGAAGCTCAGGGAGTTACTTCTGCTGACATAGAAGATTTGTTGGATGAGTTGCAGGAGCATGTTGAGTCCATTGACATGGCCAATGATCTTCACTCCGTTGGCGGTTTGGTCCCTCTTCTTGGTCACCTGAAGAATTCCCATGCTAATATCCGTGCAAAGGCTGCAGAAGTTGTGACCACTATTGTCCAGAACAACCCCAAGAGCCAGCAATTGGTTATGGAAGCGAATGGCTTAGAATATCTGTTTACTAATCTAGCATCTGACCCTGATGTCACGGTTCGAACCAAAGCCCTTGGAGCAATTTCCTCTTTAATCCGGCACAACAAACCCGGTATCACTGCATTTCGTCTGGCAAATGGTTATGCAGCCTTGAGAGATGCTTTGGCTTCTGACAACGTGAGATTCCAGAGGAAAGCTCTGAACTTGATTCAGTTGCTACTGCACGAGAATAGTTCTGATTGCAACGTAGTAACGGAGCTAGGATTTCCACGCATAATGTTGCACCTGGCCTCTAGCGAAGATCGATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005488 GO:0005515 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010604 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031625 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0042176 GO:0043086 GO:0044092 GO:0044389 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901800 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Fes1

Protein Analysis

337

Amino Acids

38.03

Weight (kDa)

6.1

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09350 AT3G09350 AT3G09350 AT3G09350
fragaria_vesca	FvH4_5g15390 FvH4_6g11350
malus_domestica	MD04G1131900.v1.1 MD12G1145000.v1.1
prunus_persica	Prupe.6G258500_v2.0.a1
pyrus_communis	pycom04g12000 pycom12g13940
rosa_chinensis	RchiOBHm_Chr3g0462931 RchiOBHm_Chr7g0180681
rosa_laevigata	RLG00000005241 RLG00000024822
rosa_multiflora	Rmu_sc0000766.1_g000019 Rmu_sc0007457.1_g000030 Rmu_sc0023372.1_g000010
rosa_roxburghii	Rroxscaffold_3G00272660 Rroxscaffold_6G00417090
rosa_rugosa	Rorug03G0060000 Rorug06G0434900
rosa_samantha	Rh3DG123600 Rh7AG036500 Rh7BG036300 Rh7CG038000 Rh7DG036500
rosa_wichuraiana	Rw3G010030 Rw7G003010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	749
AatII	GACGTC	1 cut(s)	477
AccB7I	CCANNNNNTGG	1 cut(s)	691
AccBSI	CCGCTC	2 cut(s)	131, 175
AciI	CCGC	6 cut(s)	37, 131, 173, 290, 297, 582
AclI	AACGTT	1 cut(s)	98
AcoI	YGGCCR	1 cut(s)	558
AcsI	RAATTY	2 cut(s)	88, 613
AcuI	CTGAAG	1 cut(s)	629
AcyI	GRCGYC	1 cut(s)	474
AfiI	CCNNNNNNNGG	4 cut(s)	36, 599, 637, 691
AgsI	TTSAA	2 cut(s)	122, 182
AjnI	CCWGG	1 cut(s)	984
AloI	GAACNNNNNNTCC	2 cut(s)	108, 140
AluBI	AGCT	3 cut(s)	485, 896, 958
AluI	AGCT	3 cut(s)	485, 896, 958
Alw26I	GTCTC	1 cut(s)	62
AoxI	GGCC	3 cut(s)	43, 558, 987
ApeKI	GCWGC	2 cut(s)	641, 845
ApoI	RAATTY	2 cut(s)	88, 613
AspS9I	GGNCC	3 cut(s)	44, 299, 589
AsuC2I	CCSGG	1 cut(s)	810
AsuHPI	GGTGA	1 cut(s)	596
AsuII	TTCGAA	1 cut(s)	760
AvaII	GGWCC	2 cut(s)	299, 589
AxyI	CCTNAGG	1 cut(s)	468
BalI	TGGCCA	1 cut(s)	560
BauI	CACGAG	1 cut(s)	923
BbvI	GCAGC	2 cut(s)	628, 857
BccI	CCATC	1 cut(s)	338
BceAI	ACGGC	1 cut(s)	310
BciT130I	CCWGG	1 cut(s)	986
BciVI	GTATCC	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	810
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	3 cut(s)	734, 959, 993
BfmI	CTRYAG	1 cut(s)	642
BfuI	GTATCC	1 cut(s)	150
BisI	GCNGC	3 cut(s)	38, 642, 846
BlsI	GCNGC	3 cut(s)	39, 643, 847
Bme1390I	CCNGG	2 cut(s)	810, 986
Bme18I	GGWCC	2 cut(s)	299, 589
BmgT120I	GGNCC	3 cut(s)	44, 299, 589
BmiI	GGNNCC	3 cut(s)	301, 329, 591
BmrFI	CCNGG	2 cut(s)	810, 986
BmrI	ACTGGG	1 cut(s)	316
BmsI	GCATC	3 cut(s)	393, 746, 847
BmuI	ACTGGG	1 cut(s)	316
BplI	GAGNNNNNCTC	4 cut(s)	319, 351, 880, 912
BpmI	CTGGAG	1 cut(s)	124
Bpu10I	CCTNAGC	1 cut(s)	486
Bpu14I	TTCGAA	1 cut(s)	760
BpuEI	CTTGAG	2 cut(s)	16, 871
BpuMI	CCSGG	1 cut(s)	810
Bsa29I	ATCGAT	2 cut(s)	420, 1003
BsaHI	GRCGYC	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	772
Bsc4I	CCNNNNNNNGG	4 cut(s)	36, 599, 637, 691
Bse1I	ACTGG	1 cut(s)	311
Bse21I	CCTNAGG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	986
BseCI	ATCGAT	2 cut(s)	420, 1003
BseDI	CCNNGG	1 cut(s)	772
BseGI	GGATG	3 cut(s)	155, 441, 529
BseLI	CCNNNNNNNGG	4 cut(s)	36, 599, 637, 691
BseMII	CTCAG	2 cut(s)	459, 500
BseNI	ACTGG	1 cut(s)	311
BseRI	GAGGAG	1 cut(s)	389
BseXI	GCAGC	2 cut(s)	628, 857
BseYI	CCCAGC	1 cut(s)	46
BsgI	GTGCAG	1 cut(s)	905
BshFI	GGCC	3 cut(s)	45, 560, 989
BshVI	ATCGAT	2 cut(s)	420, 1003
BsiSI	CCGG	2 cut(s)	796, 810
BslFI	GGGAC	2 cut(s)	12, 575
BslI	CCNNNNNNNGG	4 cut(s)	36, 599, 637, 691
BsmAI	GTCTC	1 cut(s)	62
BsmBI	CGTCTC	1 cut(s)	62
BsmFI	GGGAC	2 cut(s)	12, 575
BsnI	GGCC	3 cut(s)	45, 560, 989
Bsp119I	TTCGAA	1 cut(s)	760
Bsp143I	GATC	3 cut(s)	565, 1000, 1004
BspACI	CCGC	6 cut(s)	37, 131, 173, 290, 297, 582
BspANI	GGCC	3 cut(s)	45, 560, 989
BspCNI	CTCAG	2 cut(s)	460, 499
BspDI	ATCGAT	2 cut(s)	420, 1003
BspLI	GGNNCC	3 cut(s)	301, 329, 591
BspMAI	CTGCAG	1 cut(s)	646
BspT104I	TTCGAA	1 cut(s)	760
BsrBI	CCGCTC	2 cut(s)	131, 175
BsrI	ACTGG	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	772
BssMI	GATC	3 cut(s)	565, 1000, 1004
BssNI	GRCGYC	1 cut(s)	474
BssSI	CACGAG	1 cut(s)	923
BssT1I	CCWWGG	1 cut(s)	772
Bst2BI	CACGAG	1 cut(s)	923
Bst2UI	CCWGG	1 cut(s)	986
Bst4CI	ACNGT	4 cut(s)	18, 26, 187, 757
Bst6I	CTCTTC	3 cut(s)	65, 223, 600
BstACI	GRCGYC	1 cut(s)	474
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstBI	TTCGAA	1 cut(s)	760
BstC8I	GCNNGC	1 cut(s)	686
BstDEI	CTNAG	4 cut(s)	468, 486, 712, 1008
BstEII	GGTNACC	1 cut(s)	602
BstF5I	GGATG	3 cut(s)	155, 441, 529
BstKTI	GATC	3 cut(s)	568, 1003, 1007
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	3 cut(s)	565, 1000, 1004
BstMWI	GCNNNNNNNGC	5 cut(s)	287, 369, 457, 641, 776
BstNI	CCWGG	1 cut(s)	986
BstNSI	RCATGY	1 cut(s)	542
BstPI	GGTNACC	1 cut(s)	602
BstSCI	CCNGG	2 cut(s)	808, 984
BstSFI	CTRYAG	1 cut(s)	642
BstV1I	GCAGC	2 cut(s)	628, 857
BstXI	CCANNNNNNTGG	1 cut(s)	556
Bsu15I	ATCGAT	2 cut(s)	420, 1003
Bsu36I	CCTNAGG	1 cut(s)	468
BsuI	GTATCC	1 cut(s)	150
BsuRI	GGCC	3 cut(s)	45, 560, 989
BsuTUI	ATCGAT	2 cut(s)	420, 1003
BtgZI	GCGATG	1 cut(s)	416
BtsCI	GGATG	3 cut(s)	155, 441, 529
BtsI	GCAGTG	1 cut(s)	816
BtsIMutI	CAGTG	1 cut(s)	816
Cac8I	GCNNGC	1 cut(s)	686
Cfr13I	GGNCC	3 cut(s)	44, 299, 589
ClaI	ATCGAT	2 cut(s)	420, 1003
CviAII	CATG	3 cut(s)	539, 556, 620
DdeI	CTNAG	4 cut(s)	468, 486, 712, 1008
DpnI	GATC	3 cut(s)	567, 1002, 1006
DpnII	GATC	3 cut(s)	565, 1000, 1004
DraI	TTTAAA	1 cut(s)	13
DrdI	GACNNNNNNGTC	1 cut(s)	749
DseDI	GACNNNNNNGTC	1 cut(s)	749
EaeI	YGGCCR	1 cut(s)	558
Eam1104I	CTCTTC	3 cut(s)	65, 223, 600
EarI	CTCTTC	3 cut(s)	65, 223, 600
EciI	GGCGGA	2 cut(s)	305, 312
Eco130I	CCWWGG	1 cut(s)	772
Eco32I	GATATC	1 cut(s)	447
Eco47I	GGWCC	2 cut(s)	299, 589
Eco57I	CTGAAG	1 cut(s)	629
Eco81I	CCTNAGG	1 cut(s)	468
Eco91I	GGTNACC	1 cut(s)	602
EcoO65I	GGTNACC	1 cut(s)	602
EcoRI	GAATTC	1 cut(s)	613
EcoRII	CCWGG	1 cut(s)	984
EcoRV	GATATC	1 cut(s)	447
EcoT14I	CCWWGG	1 cut(s)	772
ErhI	CCWWGG	1 cut(s)	772
Esp3I	CGTCTC	1 cut(s)	62
FaeI	CATG	3 cut(s)	542, 559, 623
FaqI	GGGAC	2 cut(s)	12, 575
FatI	CATG	3 cut(s)	538, 555, 619
FauI	CCCGC	1 cut(s)	180
Fnu4HI	GCNGC	3 cut(s)	38, 642, 846
FokI	GGATG	3 cut(s)	142, 448, 536
Fsp4HI	GCNGC	3 cut(s)	38, 642, 846
FspBI	CTAG	3 cut(s)	734, 959, 993
GluI	GCNGC	3 cut(s)	38, 642, 846
GsaI	CCCAGC	1 cut(s)	50
GsuI	CTGGAG	1 cut(s)	124
HaeIII	GGCC	3 cut(s)	45, 560, 989
HapII	CCGG	2 cut(s)	796, 810
Hin1I	GRCGYC	1 cut(s)	474
Hin1II	CATG	3 cut(s)	542, 559, 623
HinfI	GANTC	4 cut(s)	463, 545, 882, 907
HpaII	CCGG	2 cut(s)	796, 810
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	1 cut(s)	726
Hpy188I	TCNGA	7 cut(s)	128, 274, 343, 742, 871, 900, 937
Hpy188III	TCNNGA	6 cut(s)	93, 103, 113, 467, 667, 886
Hpy8I	GTNNAC	1 cut(s)	726
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	3 cut(s)	162, 305, 433
HpyCH4III	ACNGT	4 cut(s)	18, 26, 187, 757
HpyCH4IV	ACGT	4 cut(s)	98, 474, 876, 945
HpyF10VI	GCNNNNNNNGC	5 cut(s)	287, 369, 457, 641, 776
HpyF3I	CTNAG	4 cut(s)	468, 486, 712, 1008
HpySE526I	ACGT	4 cut(s)	98, 474, 876, 945
Hsp92I	GRCGYC	1 cut(s)	474
Hsp92II	CATG	3 cut(s)	542, 559, 623
Kzo9I	GATC	3 cut(s)	565, 1000, 1004
LmnI	GCTCC	5 cut(s)	180, 327, 535, 776, 955
Lsp1109I	GCAGC	2 cut(s)	628, 857
LweI	GCATC	3 cut(s)	393, 746, 847
MaeI	CTAG	3 cut(s)	734, 959, 993
MaeII	ACGT	4 cut(s)	98, 474, 876, 945
MaeIII	GTNAC	5 cut(s)	493, 602, 652, 751, 949
MalI	GATC	3 cut(s)	567, 1002, 1006
MbiI	CCGCTC	2 cut(s)	131, 175
MboI	GATC	3 cut(s)	565, 1000, 1004
MboII	GAAGA	7 cut(s)	52, 240, 524, 560, 587, 622, 1010
MfeI	CAATTG	1 cut(s)	689
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	5 cut(s)	88, 364, 613, 689, 780
MluNI	TGGCCA	1 cut(s)	560
MlyI	GAGTC	2 cut(s)	457, 554
MmeI	TCCRAC	2 cut(s)	297, 501
Mox20I	TGGCCA	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	560
MseI	TTAA	4 cut(s)	12, 20, 251, 791
MslI	CAYNNNNRTG	2 cut(s)	342, 554
Msp20I	TGGCCA	1 cut(s)	560
MspI	CCGG	2 cut(s)	796, 810
MspR9I	CCNGG	2 cut(s)	810, 986
MunI	CAATTG	1 cut(s)	689
MvaI	CCWGG	1 cut(s)	986
MwoI	GCNNNNNNNGC	5 cut(s)	287, 369, 457, 641, 776
NciI	CCSGG	1 cut(s)	810
NdeII	GATC	3 cut(s)	565, 1000, 1004
NlaIII	CATG	3 cut(s)	542, 559, 623
NlaIV	GGNNCC	3 cut(s)	301, 329, 591
NmuCI	GTSAC	3 cut(s)	602, 652, 751
NspI	RCATGY	1 cut(s)	542
NspV	TTCGAA	1 cut(s)	760
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PfeI	GAWTC	2 cut(s)	882, 907
PflMI	CCANNNNNTGG	1 cut(s)	691
PkrI	GCNGC	3 cut(s)	39, 643, 847
PleI	GAGTC	2 cut(s)	457, 553
PpsI	GAGTC	2 cut(s)	457, 553
Psp1406I	AACGTT	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	984
PspEI	GGTNACC	1 cut(s)	602
PspFI	CCCAGC	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	984
PspN4I	GGNNCC	3 cut(s)	301, 329, 591
PspPI	GGNCC	3 cut(s)	44, 299, 589
PstI	CTGCAG	1 cut(s)	646
RseI	CAYNNNNRTG	2 cut(s)	342, 554
SaqAI	TTAA	4 cut(s)	12, 20, 251, 791
SatI	GCNGC	3 cut(s)	38, 642, 846
Sau3AI	GATC	3 cut(s)	565, 1000, 1004
Sau96I	GGNCC	3 cut(s)	44, 299, 589
SchI	GAGTC	2 cut(s)	457, 554
ScrFI	CCNGG	2 cut(s)	810, 986
SfaNI	GCATC	3 cut(s)	393, 746, 847
SfcI	CTRYAG	1 cut(s)	642
SfuI	TTCGAA	1 cut(s)	760
SinI	GGWCC	2 cut(s)	299, 589
SmiMI	CAYNNNNRTG	2 cut(s)	342, 554
SmlI	CTYRAG	2 cut(s)	31, 850
SmoI	CTYRAG	2 cut(s)	31, 850
Sse9I	AATT	5 cut(s)	88, 364, 613, 689, 780
SsiI	CCGC	6 cut(s)	37, 131, 173, 290, 297, 582
SspI	AATATT	1 cut(s)	9
SspMI	CTAG	3 cut(s)	734, 959, 993
StyD4I	CCNGG	2 cut(s)	808, 984
StyI	CCWWGG	1 cut(s)	772
TaaI	ACNGT	4 cut(s)	18, 26, 187, 757
TaiI	ACGT	4 cut(s)	101, 477, 879, 948
TaqI	TCGA	4 cut(s)	147, 420, 760, 1003
TasI	AATT	5 cut(s)	88, 364, 613, 689, 780
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	2 cut(s)	882, 907
Tru1I	TTAA	4 cut(s)	12, 20, 251, 791
Tru9I	TTAA	4 cut(s)	12, 20, 251, 791
TscAI	CASTG	1 cut(s)	823
TseFI	GTSAC	3 cut(s)	602, 652, 751
TseI	GCWGC	2 cut(s)	641, 845
Tsp45I	GTSAC	3 cut(s)	602, 652, 751
TspDTI	ATGAA	4 cut(s)	144, 184, 202, 452
TspGWI	ACGGA	4 cut(s)	397, 565, 620, 968
TspRI	CASTG	1 cut(s)	823
Van91I	CCANNNNNTGG	1 cut(s)	691
VpaK11BI	GGWCC	2 cut(s)	299, 589
XapI	RAATTY	2 cut(s)	88, 613
XceI	RCATGY	1 cut(s)	542
XspI	CTAG	3 cut(s)	734, 959, 993
ZraI	GACGTC	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.