Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005504

Physical Location & Seq

Genomic Coordinates Forward (+)

4483327 .. 4484959

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0060000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTCTCTCTCTCTCTCTCTCCAGTCTCCCCCCCTCCCCTCTCTCTTCAAAAACCAGATCTGCGACCCTCACAACCCCCTCCGTTTCCAACCATCACTGATGGCCTCTCCTTCTATCTTTTTCATGTTATCTGCACTTTCCTTCACACATGGGTCTGATCAATTTTATAACAGTTGTATTGTTTGGCTGTTAAAACCCTCTGCCAACCTCATCTCTCAGTCATATGCTTCTTCTTTCTTATCTTGCTCCTGCAGTTTGCTTCAACAAGGAATGAAACAAATAATAATAAGCCCAGAAACCTCTGAAGCTAAAGCATTAGAGAAGGTGGAGGATAAGTCCAAAGTTGCCAGGGCATTGAAGGAAAGTGTTCTCCATCAAATATGTGAGGCAAAGCCATTGGCTTTGATCATTGATTGGAATTCACTCCTGTCTAACAAAAAGAAGAGAACTGTGATCATAGCCCTGGCAAAGTTTGCACCAGAATCACAGGGCACACTGAATTTTAAGTTTGGAACTTCTTCTGGAGCTGTATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005488 GO:0005515 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010604 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031625 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0042176 GO:0043086 GO:0044092 GO:0044389 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901800 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Fes1

Protein Analysis

178

Amino Acids

19.48

Weight (kDa)

9.16

Isoelectric Point (pI)

58.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09350 AT3G09350 AT3G09350 AT3G09350
fragaria_vesca	FvH4_5g15390 FvH4_6g11350
malus_domestica	MD04G1131900.v1.1 MD12G1145000.v1.1
prunus_persica	Prupe.6G258500_v2.0.a1
pyrus_communis	pycom04g12000 pycom12g13940
rosa_chinensis	RchiOBHm_Chr3g0462931 RchiOBHm_Chr7g0180681
rosa_laevigata	RLG00000005241 RLG00000024822
rosa_multiflora	Rmu_sc0000766.1_g000019 Rmu_sc0007457.1_g000030 Rmu_sc0023372.1_g000010
rosa_roxburghii	Rroxscaffold_3G00272660 Rroxscaffold_6G00417090
rosa_rugosa	Rorug03G0060000 Rorug06G0434900
rosa_samantha	Rh3DG123600 Rh7AG036500 Rh7BG036300 Rh7CG038000 Rh7DG036500
rosa_wichuraiana	Rw3G010030 Rw7G003010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	168
AcsI	RAATTY	2 cut(s)	418, 499
AcuI	CTGAAG	1 cut(s)	324
AgsI	TTSAA	3 cut(s)	49, 263, 358
AjnI	CCWGG	2 cut(s)	347, 462
AluBI	AGCT	2 cut(s)	308, 527
AluI	AGCT	2 cut(s)	308, 527
Alw26I	GTCTC	2 cut(s)	9, 30
AoxI	GGCC	1 cut(s)	102
ApoI	RAATTY	2 cut(s)	418, 499
Asp700I	GAANNNNTTC	2 cut(s)	366, 517
BaeGI	GKGCMC	1 cut(s)	494
BccI	CCATC	3 cut(s)	94, 100, 381
BciT130I	CCWGG	2 cut(s)	349, 464
BclI	TGATCA	3 cut(s)	157, 405, 453
BcoDI	GTCTC	2 cut(s)	9, 30
BfmI	CTRYAG	1 cut(s)	250
BglII	AGATCT	1 cut(s)	57
Bme1390I	CCNGG	2 cut(s)	349, 464
BmrFI	CCNGG	2 cut(s)	349, 464
BpmI	CTGGAG	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	348, 462
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bse1I	ACTGG	1 cut(s)	22
BseBI	CCWGG	2 cut(s)	349, 464
BseDI	CCNNGG	2 cut(s)	348, 462
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	1 cut(s)	22
BseSI	GKGCMC	1 cut(s)	494
BsgI	GTGCAG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	104
BsmAI	GTCTC	2 cut(s)	9, 30
BsnI	GGCC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	494
Bsp143I	GATC	4 cut(s)	57, 157, 405, 453
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	229
BspMAI	CTGCAG	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	2 cut(s)	348, 462
BssMI	GATC	4 cut(s)	57, 157, 405, 453
Bst2UI	CCWGG	2 cut(s)	349, 464
Bst4CI	ACNGT	2 cut(s)	173, 451
Bst6I	CTCTTC	2 cut(s)	50, 437
BstAPI	GCANNNNNTGC	1 cut(s)	473
BstDEI	CTNAG	2 cut(s)	216, 534
BstKTI	GATC	4 cut(s)	60, 160, 408, 456
BstMAI	GTCTC	2 cut(s)	9, 30
BstMBI	GATC	4 cut(s)	57, 157, 405, 453
BstMWI	GCNNNNNNNGC	1 cut(s)	473
BstNI	CCWGG	2 cut(s)	349, 464
BstSCI	CCNGG	2 cut(s)	347, 462
BstSFI	CTRYAG	1 cut(s)	250
BstSLI	GKGCMC	1 cut(s)	494
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	104
BtsIMutI	CAGTG	2 cut(s)	95, 494
CviAII	CATG	2 cut(s)	124, 149
CviJI	RGCY	8 cut(s)	104, 187, 291, 308, 394, 401, 461, 527
CviKI_1	RGCY	8 cut(s)	104, 187, 291, 308, 394, 401, 461, 527
DdeI	CTNAG	2 cut(s)	216, 534
DpnI	GATC	4 cut(s)	59, 159, 407, 455
DpnII	GATC	4 cut(s)	57, 157, 405, 453
Eam1104I	CTCTTC	2 cut(s)	50, 437
EarI	CTCTTC	2 cut(s)	50, 437
Eco57I	CTGAAG	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	418
EcoRII	CCWGG	2 cut(s)	347, 462
FaeI	CATG	2 cut(s)	127, 152
FaiI	YATR	7 cut(s)	125, 150, 168, 223, 225, 382, 458
FatI	CATG	2 cut(s)	123, 148
FauNDI	CATATG	1 cut(s)	223
FbaI	TGATCA	3 cut(s)	157, 405, 453
GsuI	CTGGAG	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	104
Hin1II	CATG	2 cut(s)	127, 152
HinfI	GANTC	1 cut(s)	482
Hpy188I	TCNGA	2 cut(s)	157, 304
Hpy188III	TCNNGA	1 cut(s)	522
HpyAV	CCTTC	4 cut(s)	120, 151, 316, 352
HpyCH4III	ACNGT	2 cut(s)	173, 451
HpyCH4V	TGCA	3 cut(s)	134, 252, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	473
HpyF3I	CTNAG	2 cut(s)	216, 534
Hsp92II	CATG	2 cut(s)	127, 152
Ksp22I	TGATCA	3 cut(s)	157, 405, 453
Kzo9I	GATC	4 cut(s)	57, 157, 405, 453
LmnI	GCTCC	2 cut(s)	251, 524
MalI	GATC	4 cut(s)	59, 159, 407, 455
MboI	GATC	4 cut(s)	57, 157, 405, 453
MboII	GAAGA	4 cut(s)	37, 222, 454, 510
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	494
MluCI	AATT	3 cut(s)	161, 418, 499
MmeI	TCCRAC	1 cut(s)	112
MroXI	GAANNNNTTC	2 cut(s)	366, 517
MseI	TTAA	2 cut(s)	191, 504
MspR9I	CCNGG	2 cut(s)	349, 464
MvaI	CCWGG	2 cut(s)	349, 464
MwoI	GCNNNNNNNGC	1 cut(s)	473
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	4 cut(s)	57, 157, 405, 453
NlaIII	CATG	2 cut(s)	127, 152
PdmI	GAANNNNTTC	2 cut(s)	366, 517
PfeI	GAWTC	1 cut(s)	482
PsiI	TTATAA	1 cut(s)	168
Psp6I	CCWGG	2 cut(s)	347, 462
PspGI	CCWGG	2 cut(s)	347, 462
PstI	CTGCAG	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	57
SaqAI	TTAA	2 cut(s)	191, 504
Sau3AI	GATC	4 cut(s)	57, 157, 405, 453
ScrFI	CCNGG	2 cut(s)	349, 464
SduI	GDGCHC	1 cut(s)	494
SetI	ASST	5 cut(s)	210, 302, 310, 327, 529
SfcI	CTRYAG	1 cut(s)	250
Sse9I	AATT	3 cut(s)	161, 418, 499
StyD4I	CCNGG	2 cut(s)	347, 462
TaaI	ACNGT	2 cut(s)	173, 451
TasI	AATT	3 cut(s)	161, 418, 499
TfiI	GAWTC	1 cut(s)	482
Tru1I	TTAA	2 cut(s)	191, 504
Tru9I	TTAA	2 cut(s)	191, 504
TscAI	CASTG	2 cut(s)	102, 501
TspDTI	ATGAA	2 cut(s)	112, 287
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	2 cut(s)	102, 501
XapI	RAATTY	2 cut(s)	418, 499
XmnI	GAANNNNTTC	2 cut(s)	366, 517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.