Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005504

Physical Location & Seq

Genomic Coordinates Forward (+)

14970956 .. 14972557

Gene Structure 1602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g12000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCTGACGGCGGACCCAACTGGGAAGGACTGCTCAAATGGAGCCTTGCCCACTCCGATGGCACTCGCCCCAATCGCAATTTGAGCGAGGAGGATCGCAAGTGGTTTATGGAAGCGGTGCAATCGCAGACCATCGACGTTGTGAAGCGGATGAAGGAGATAACCCTTGTAATGCAAACTCCTGAGCAGGTTTTGGAAGCTCAAGGAGTTACTCCTGCTGATATTGAAGATTTGTTGGATGAGTTGCAGGAGCATGTTGAGTCCATCGATATGGCCAATGATCTTCATTCCATTGGCGGTTTGGTCCCGCTTCTTGGTCACCTAAAGAATCCCCATGCTAATATCCGCGCCAAGGCTGCAGAAGTTGTGACAACTATTGTTCAGAACAACCCCAAGAGCCAGCAACTGGTTATGGAAGCGAATGGCTTGGAATATCTGTTTAATAATCTCGCATCTGACCCTGATGTCACAGTTCGAACCAAAGCTCTCGGCGCAATTTCCTCTTTGATCCGGCACAACAAACCCGGTATCACTGCATTTCGTCTGGCAAATGGATATGCAGCCTTAAGAGATGCTTTGACTTCTGAAAACGTGAGATTCCAGAGGAAAGCCCTGAACTTGATTCAGTTCCTACTGCACGAGAATAGTTCTGATTGCAACGTAGTAACTGAGCTAGGATTTCGCCGCATAATGTTGCACCTTGCCTCTAGCAAAGATCTAGAAGTACGAGAAGCTGCACTTCGGGGCCTTCTTGCGCTTGCCCAAGACAAAACTGATGGGGCCAATAGTGGGTTAGCTGATGAAGATGAGAAGTTGAAGCAACTTCTTCAAGGACGAATTGAAAGCATCAGTTCAATGTCTCCTGAGCGATCTCGGTGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005488 GO:0005515 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010604 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031625 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0042176 GO:0043086 GO:0044092 GO:0044389 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901800 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Fes1

Protein Analysis

295

Amino Acids

32.51

Weight (kDa)

5.44

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fes1	PF08609	9 - 95	1.3e-11	Nucleotide exchange factor Fes1
SIL1	PF16782	72 - 217	4.6e-06	Nucleotide exchange factor SIL1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09350 AT3G09350 AT3G09350 AT3G09350
fragaria_vesca	FvH4_5g15390 FvH4_6g11350
malus_domestica	MD04G1131900.v1.1 MD12G1145000.v1.1
prunus_persica	Prupe.6G258500_v2.0.a1
pyrus_communis	pycom04g12000 pycom12g13940
rosa_chinensis	RchiOBHm_Chr3g0462931 RchiOBHm_Chr7g0180681
rosa_laevigata	RLG00000005241 RLG00000024822
rosa_multiflora	Rmu_sc0000766.1_g000019 Rmu_sc0007457.1_g000030 Rmu_sc0023372.1_g000010
rosa_roxburghii	Rroxscaffold_3G00272660 Rroxscaffold_6G00417090
rosa_rugosa	Rorug03G0060000 Rorug06G0434900
rosa_samantha	Rh3DG123600 Rh7AG036500 Rh7BG036300 Rh7CG038000 Rh7DG036500
rosa_wichuraiana	Rw3G010030 Rw7G003010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	464
Acc36I	ACCTGC	1 cut(s)	178
AccB7I	CCANNNNNTGG	1 cut(s)	406
AccII	CGCG	1 cut(s)	348
AciI	CCGC	7 cut(s)	12, 116, 148, 297, 308, 346, 685
AclWI	GGATC	2 cut(s)	102, 502
AcoI	YGGCCR	1 cut(s)	273
AfaI	GTAC	1 cut(s)	726
AfiI	CCNNNNNNNGG	4 cut(s)	314, 352, 406, 789
AflII	CTTAAG	1 cut(s)	565
AgsI	TTSAA	5 cut(s)	227, 817, 830, 842, 855
AluBI	AGCT	6 cut(s)	200, 485, 673, 734, 797, 882
AluI	AGCT	6 cut(s)	200, 485, 673, 734, 797, 882
Alw26I	GTCTC	1 cut(s)	864
AlwI	GGATC	2 cut(s)	102, 502
AlwNI	CAGNNNCTG	1 cut(s)	406
AoxI	GGCC	3 cut(s)	273, 745, 780
ApeKI	GCWGC	4 cut(s)	356, 560, 734, 879
AspLEI	GCGC	3 cut(s)	350, 494, 757
AspS9I	GGNCC	4 cut(s)	14, 304, 745, 780
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	1 cut(s)	311
AsuII	TTCGAA	1 cut(s)	475
AvaII	GGWCC	2 cut(s)	14, 304
BalI	TGGCCA	1 cut(s)	275
BauI	CACGAG	1 cut(s)	638
BbvI	GCAGC	3 cut(s)	343, 572, 721
BccI	CCATC	4 cut(s)	53, 140, 272, 770
BceAI	ACGGC	1 cut(s)	25
BcgI	CGANNNNNNTGC	1 cut(s)	858
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	864
BfaI	CTAG	4 cut(s)	674, 708, 719, 883
BfmI	CTRYAG	1 cut(s)	357
BfrI	CTTAAG	1 cut(s)	565
BfuAI	ACCTGC	1 cut(s)	178
BglII	AGATCT	1 cut(s)	715
BisI	GCNGC	5 cut(s)	357, 561, 685, 735, 880
BlsI	GCNGC	5 cut(s)	358, 562, 686, 736, 881
Bme1390I	CCNGG	1 cut(s)	525
Bme18I	GGWCC	2 cut(s)	14, 304
BmgT120I	GGNCC	4 cut(s)	14, 304, 745, 780
BmiI	GGNNCC	5 cut(s)	16, 44, 306, 746, 781
BmrFI	CCNGG	1 cut(s)	525
BmrI	ACTGGG	1 cut(s)	31
BmsI	GCATC	3 cut(s)	461, 562, 855
BmuI	ACTGGG	1 cut(s)	31
Bpu10I	CCTNAGC	2 cut(s)	183, 864
Bpu14I	TTCGAA	1 cut(s)	475
BpuEI	CTTGAG	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	525
Bsa29I	ATCGAT	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	4 cut(s)	314, 352, 406, 789
Bse1I	ACTGG	2 cut(s)	26, 411
BseCI	ATCGAT	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	2 cut(s)	156, 244
BseLI	CCNNNNNNNGG	4 cut(s)	314, 352, 406, 789
BseMII	CTCAG	3 cut(s)	174, 660, 855
BseNI	ACTGG	2 cut(s)	26, 411
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	3 cut(s)	343, 572, 721
BsgI	GTGCAG	2 cut(s)	620, 720
Bsh1236I	CGCG	1 cut(s)	348
BshFI	GGCC	3 cut(s)	275, 747, 782
BshVI	ATCGAT	1 cut(s)	267
BsiSI	CCGG	2 cut(s)	511, 525
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	4 cut(s)	314, 352, 406, 789
BsmAI	GTCTC	1 cut(s)	864
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	3 cut(s)	275, 747, 782
Bsp119I	TTCGAA	1 cut(s)	475
Bsp143I	GATC	5 cut(s)	94, 280, 507, 715, 869
BspACI	CCGC	7 cut(s)	12, 116, 148, 297, 308, 346, 685
BspANI	GGCC	3 cut(s)	275, 747, 782
BspCNI	CTCAG	3 cut(s)	175, 661, 856
BspDI	ATCGAT	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	348
BspLI	GGNNCC	5 cut(s)	16, 44, 306, 746, 781
BspMAI	CTGCAG	1 cut(s)	361
BspMI	ACCTGC	1 cut(s)	178
BspPI	GGATC	2 cut(s)	102, 502
BspT104I	TTCGAA	1 cut(s)	475
BspTI	CTTAAG	1 cut(s)	565
BsrI	ACTGG	2 cut(s)	26, 411
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	5 cut(s)	94, 280, 507, 715, 869
BssSI	CACGAG	1 cut(s)	638
BssT1I	CCWWGG	1 cut(s)	351
Bst2BI	CACGAG	1 cut(s)	638
Bst4CI	ACNGT	1 cut(s)	472
BstAFI	CTTAAG	1 cut(s)	565
BstBI	TTCGAA	1 cut(s)	475
BstC8I	GCNNGC	2 cut(s)	401, 759
BstDEI	CTNAG	3 cut(s)	183, 669, 864
BstEII	GGTNACC	1 cut(s)	317
BstF5I	GGATG	2 cut(s)	156, 244
BstFNI	CGCG	1 cut(s)	348
BstHHI	GCGC	3 cut(s)	350, 494, 757
BstKTI	GATC	5 cut(s)	97, 283, 510, 718, 872
BstMAI	GTCTC	1 cut(s)	864
BstMBI	GATC	5 cut(s)	94, 280, 507, 715, 869
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 84, 356, 491
BstNSI	RCATGY	1 cut(s)	257
BstPI	GGTNACC	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	523
BstSFI	CTRYAG	1 cut(s)	357
BstUI	CGCG	1 cut(s)	348
BstV1I	GCAGC	3 cut(s)	343, 572, 721
BstX2I	RGATCY	1 cut(s)	715
BstXI	CCANNNNNNTGG	2 cut(s)	59, 271
BstYI	RGATCY	1 cut(s)	715
Bsu15I	ATCGAT	1 cut(s)	267
BsuRI	GGCC	3 cut(s)	275, 747, 782
BsuTUI	ATCGAT	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	156, 244
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	1 cut(s)	531
BveI	ACCTGC	1 cut(s)	178
Cac8I	GCNNGC	2 cut(s)	401, 759
CaiI	CAGNNNCTG	1 cut(s)	406
CfoI	GCGC	3 cut(s)	350, 494, 757
Cfr13I	GGNCC	4 cut(s)	14, 304, 745, 780
ClaI	ATCGAT	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	725
CviAII	CATG	2 cut(s)	254, 335
CviQI	GTAC	1 cut(s)	725
DdeI	CTNAG	3 cut(s)	183, 669, 864
DpnI	GATC	5 cut(s)	96, 282, 509, 717, 871
DpnII	GATC	5 cut(s)	94, 280, 507, 715, 869
DrdI	GACNNNNNNGTC	1 cut(s)	464
DseDI	GACNNNNNNGTC	1 cut(s)	464
EaeI	YGGCCR	1 cut(s)	273
EciI	GGCGGA	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	351
Eco47I	GGWCC	2 cut(s)	14, 304
Eco91I	GGTNACC	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	745
EcoO65I	GGTNACC	1 cut(s)	317
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	2 cut(s)	257, 338
FaiI	YATR	7 cut(s)	110, 255, 272, 336, 413, 558, 689
FalI	AAGNNNNNCTT	4 cut(s)	559, 591, 723, 755
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	2 cut(s)	253, 334
FauI	CCCGC	1 cut(s)	315
Fnu4HI	GCNGC	5 cut(s)	357, 561, 685, 735, 880
FokI	GGATG	2 cut(s)	163, 251
Fsp4HI	GCNGC	5 cut(s)	357, 561, 685, 735, 880
FspBI	CTAG	4 cut(s)	674, 708, 719, 883
GlaI	GCGC	3 cut(s)	349, 493, 756
GluI	GCNGC	5 cut(s)	357, 561, 685, 735, 880
HaeIII	GGCC	3 cut(s)	275, 747, 782
HapII	CCGG	2 cut(s)	511, 525
HhaI	GCGC	3 cut(s)	350, 494, 757
Hin1II	CATG	2 cut(s)	257, 338
Hin6I	GCGC	3 cut(s)	348, 492, 755
HinP1I	GCGC	3 cut(s)	348, 492, 755
HinfI	GANTC	4 cut(s)	260, 328, 597, 622
HpaII	CCGG	2 cut(s)	511, 525
HphI	GGTGA	1 cut(s)	311
Hpy188I	TCNGA	5 cut(s)	58, 384, 457, 586, 652
Hpy188III	TCNNGA	4 cut(s)	182, 601, 719, 863
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	3 cut(s)	20, 148, 758
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4IV	ACGT	3 cut(s)	138, 591, 660
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 84, 356, 491
HpyF3I	CTNAG	3 cut(s)	183, 669, 864
HpySE526I	ACGT	3 cut(s)	138, 591, 660
Hsp92II	CATG	2 cut(s)	257, 338
HspAI	GCGC	3 cut(s)	348, 492, 755
Kzo9I	GATC	5 cut(s)	94, 280, 507, 715, 869
LmnI	GCTCC	2 cut(s)	42, 250
Lsp1109I	GCAGC	3 cut(s)	343, 572, 721
LweI	GCATC	3 cut(s)	461, 562, 855
MaeI	CTAG	4 cut(s)	674, 708, 719, 883
MaeII	ACGT	3 cut(s)	138, 591, 660
MaeIII	GTNAC	5 cut(s)	208, 317, 367, 466, 664
MalI	GATC	5 cut(s)	96, 282, 509, 717, 871
MboI	GATC	5 cut(s)	94, 280, 507, 715, 869
MboII	GAAGA	4 cut(s)	239, 275, 815, 818
MflI	RGATCY	1 cut(s)	715
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	3 cut(s)	79, 495, 837
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	5 cut(s)	82, 85, 511, 597, 715
Mox20I	TGGCCA	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	2 cut(s)	441, 566
MslI	CAYNNNNRTG	2 cut(s)	57, 269
Msp20I	TGGCCA	1 cut(s)	275
MspCI	CTTAAG	1 cut(s)	565
MspI	CCGG	2 cut(s)	511, 525
MspR9I	CCNGG	1 cut(s)	525
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	4 cut(s)	75, 84, 356, 491
NciI	CCSGG	1 cut(s)	525
NdeII	GATC	5 cut(s)	94, 280, 507, 715, 869
NlaIII	CATG	2 cut(s)	257, 338
NlaIV	GGNNCC	5 cut(s)	16, 44, 306, 746, 781
NmeAIII	GCCGAG	1 cut(s)	468
NmuCI	GTSAC	3 cut(s)	317, 367, 466
NspI	RCATGY	1 cut(s)	257
NspV	TTCGAA	1 cut(s)	475
PfeI	GAWTC	3 cut(s)	328, 597, 622
PflMI	CCANNNNNTGG	1 cut(s)	406
PkrI	GCNGC	5 cut(s)	358, 562, 686, 736, 881
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
PspEI	GGTNACC	1 cut(s)	317
PspN4I	GGNNCC	5 cut(s)	16, 44, 306, 746, 781
PspPI	GGNCC	4 cut(s)	14, 304, 745, 780
PstI	CTGCAG	1 cut(s)	361
PstNI	CAGNNNCTG	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	715
RsaI	GTAC	1 cut(s)	726
RsaNI	GTAC	1 cut(s)	725
RseI	CAYNNNNRTG	2 cut(s)	57, 269
SaqAI	TTAA	2 cut(s)	441, 566
SatI	GCNGC	5 cut(s)	357, 561, 685, 735, 880
Sau3AI	GATC	5 cut(s)	94, 280, 507, 715, 869
Sau96I	GGNCC	4 cut(s)	14, 304, 745, 780
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	525
SfaNI	GCATC	3 cut(s)	461, 562, 855
SfcI	CTRYAG	1 cut(s)	357
SfuI	TTCGAA	1 cut(s)	475
SinI	GGWCC	2 cut(s)	14, 304
SmiMI	CAYNNNNRTG	2 cut(s)	57, 269
SmlI	CTYRAG	2 cut(s)	201, 565
SmoI	CTYRAG	2 cut(s)	201, 565
Sse9I	AATT	3 cut(s)	79, 495, 837
SsiI	CCGC	7 cut(s)	12, 116, 148, 297, 308, 346, 685
SspMI	CTAG	4 cut(s)	674, 708, 719, 883
StyD4I	CCNGG	1 cut(s)	523
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	472
TaiI	ACGT	3 cut(s)	141, 594, 663
TaqI	TCGA	3 cut(s)	135, 267, 475
TasI	AATT	3 cut(s)	79, 495, 837
TauI	GCSGC	1 cut(s)	687
TfiI	GAWTC	3 cut(s)	328, 597, 622
Tru1I	TTAA	2 cut(s)	441, 566
Tru9I	TTAA	2 cut(s)	441, 566
TscAI	CASTG	1 cut(s)	538
TseFI	GTSAC	3 cut(s)	317, 367, 466
TseI	GCWGC	4 cut(s)	356, 560, 734, 879
Tsp45I	GTSAC	3 cut(s)	317, 367, 466
TspDTI	ATGAA	3 cut(s)	167, 275, 816
TspRI	CASTG	1 cut(s)	538
Van91I	CCANNNNNTGG	1 cut(s)	406
Vha464I	CTTAAG	1 cut(s)	565
VpaK11BI	GGWCC	2 cut(s)	14, 304
XbaI	TCTAGA	1 cut(s)	718
XceI	RCATGY	1 cut(s)	257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XspI	CTAG	4 cut(s)	674, 708, 719, 883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.