Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008490

Physical Location & Seq

Genomic Coordinates Forward (+)

9454548 .. 9455119

Gene Structure 572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g16600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAGGTAGTTTCTGACTCCTCAAACATTGAGCTCAAGACTAGGTCCTTAACTTACTACAAAGCCGCCATGCTGTCTGGATCAAGCTACTTCATACAGTCTGCGGTTGGAATAGCTCAGGGTCTTGCTTATCTTCATGGATGCGCCTCAGGTCCAATACTCCTCCTAGACCTGTCAAGCCGAAGCATTTTGCTCAAGTCCCTGAAAGAGCCTCTTATTGGAGACGACGAGCTCTGCAAAGTGATTGATCACTCAAAGAGCACTGGAAGGATTTCCACTGTTGCTAGTTCTGTTGGTTATATTGCTCCAGAGTATGCATACACTGAGGGTAACAGTGGCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

115

Amino Acids

12.14

Weight (kDa)

6.06

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34420
fragaria_vesca	FvH4_2g12120 FvH4_5g16590 FvH4_5g16600
malus_domestica	MD05G1041000.v1.1 MD10G1047000.v1.1 MD10G1047300.v1.1
prunus_persica	Prupe.8G051700_v2.0.a1 Prupe.8G056100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0272061 RchiOBHm_Chr6g0272071 RchiOBHm_Chr6g0272091
rosa_laevigata	RLG00000013703
rosa_multiflora	Rmu_co8127610.1_g000001 Rmu_sc0005786.1_g000007 Rmu_sc0013301.1_g000003
rosa_roxburghii	Rroxscaffold_7G00196610
rosa_rugosa	Rorug06G0065500
rosa_samantha	Rh6AG182800 Rh6BG184300 Rh6CG183900 Rh6DG175500
rosa_wichuraiana	Rw6G015730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	66, 104
AclWI	GGATC	1 cut(s)	88
AcoI	YGGCCR	1 cut(s)	337
AfiI	CCNNNNNNNGG	1 cut(s)	218
AluBI	AGCT	4 cut(s)	34, 87, 116, 232
AluI	AGCT	4 cut(s)	34, 87, 116, 232
Alw21I	GWGCWC	3 cut(s)	36, 234, 263
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	88
AoxI	GGCC	1 cut(s)	337
Asp700I	GAANNNNTTC	1 cut(s)	271
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	2 cut(s)	45, 152
AvaII	GGWCC	2 cut(s)	45, 152
AxyI	CCTNAGG	1 cut(s)	148
BanII	GRGCYC	2 cut(s)	36, 234
Bbv12I	GWGCWC	3 cut(s)	36, 234, 263
BclI	TGATCA	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	3 cut(s)	42, 167, 285
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme18I	GGWCC	2 cut(s)	45, 152
BmgT120I	GGNCC	2 cut(s)	45, 152
BmsI	GCATC	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	291
Bpu10I	CCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	2 cut(s)	20, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse118I	RCCGGY	1 cut(s)	339
Bse1I	ACTGG	1 cut(s)	268
Bse21I	CCTNAGG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	146
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMII	CTCAG	3 cut(s)	131, 162, 315
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	2 cut(s)	10, 152
BshFI	GGCC	1 cut(s)	339
BsiHKAI	GWGCWC	3 cut(s)	36, 234, 263
BsiSI	CCGG	1 cut(s)	340
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	1 cut(s)	216
BsmBI	CGTCTC	1 cut(s)	216
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	1 cut(s)	339
Bsp1286I	GDGCHC	3 cut(s)	36, 234, 263
Bsp143I	GATC	2 cut(s)	80, 247
BspACI	CCGC	2 cut(s)	66, 104
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	3 cut(s)	130, 161, 316
BspPI	GGATC	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	339
BsrI	ACTGG	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	339
BssMI	GATC	2 cut(s)	80, 247
Bst4CI	ACNGT	3 cut(s)	99, 280, 335
BstDEI	CTNAG	3 cut(s)	117, 148, 324
BstF5I	GGATG	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	2 cut(s)	83, 250
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	2 cut(s)	80, 247
Bsu36I	CCTNAGG	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	339
BtsCI	GGATG	1 cut(s)	146
BtsIMutI	CAGTG	4 cut(s)	261, 276, 321, 340
CfoI	GCGC	1 cut(s)	146
Cfr10I	RCCGGY	1 cut(s)	339
Cfr13I	GGNCC	2 cut(s)	45, 152
CviAII	CATG	2 cut(s)	70, 137
CviJI	RGCY	8 cut(s)	34, 65, 87, 116, 180, 211, 232, 339
CviKI_1	RGCY	8 cut(s)	34, 65, 87, 116, 180, 211, 232, 339
DdeI	CTNAG	3 cut(s)	117, 148, 324
DpnI	GATC	2 cut(s)	82, 249
DpnII	GATC	2 cut(s)	80, 247
EaeI	YGGCCR	1 cut(s)	337
Ecl136II	GAGCTC	2 cut(s)	34, 232
Eco24I	GRGCYC	2 cut(s)	36, 234
Eco47I	GGWCC	2 cut(s)	45, 152
Eco53kI	GAGCTC	2 cut(s)	34, 232
Eco81I	CCTNAGG	1 cut(s)	148
EcoICRI	GAGCTC	2 cut(s)	34, 232
EcoO109I	RGGNCCY	1 cut(s)	45
EcoT22I	ATGCAT	1 cut(s)	319
EcoT38I	GRGCYC	2 cut(s)	36, 234
Esp3I	CGTCTC	1 cut(s)	216
FaeI	CATG	2 cut(s)	73, 140
FaiI	YATR	6 cut(s)	71, 95, 138, 300, 315, 319
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	2 cut(s)	69, 136
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	1 cut(s)	153
FriOI	GRGCYC	2 cut(s)	36, 234
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	3 cut(s)	42, 167, 285
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	1 cut(s)	66
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	339
HapII	CCGG	1 cut(s)	340
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	2 cut(s)	73, 140
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	1 cut(s)	340
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	3 cut(s)	37, 78, 308
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	1 cut(s)	261
HpyCH4III	ACNGT	3 cut(s)	99, 280, 335
HpyCH4V	TGCA	2 cut(s)	237, 317
HpyF3I	CTNAG	3 cut(s)	117, 148, 324
Hsp92II	CATG	2 cut(s)	73, 140
HspAI	GCGC	1 cut(s)	144
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	80, 247
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	7 cut(s)	63, 104, 135, 185, 215, 249, 321
LweI	GCATC	1 cut(s)	131
MaeI	CTAG	3 cut(s)	42, 167, 285
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	2 cut(s)	82, 249
MboI	GATC	2 cut(s)	80, 247
MboII	GAAGA	1 cut(s)	125
MhlI	GDGCHC	3 cut(s)	36, 234, 263
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	5 cut(s)	31, 157, 173, 222, 319
Mph1103I	ATGCAT	1 cut(s)	319
MroXI	GAANNNNTTC	1 cut(s)	271
MseI	TTAA	1 cut(s)	50
MspI	CCGG	1 cut(s)	340
NdeII	GATC	2 cut(s)	80, 247
NlaIII	CATG	2 cut(s)	73, 140
NsiI	ATGCAT	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	271
PflFI	GACNNNGTC	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	67
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PpuMI	RGGWCCY	1 cut(s)	45
Psp124BI	GAGCTC	2 cut(s)	36, 234
Psp5II	RGGWCCY	1 cut(s)	45
PspPI	GGNCC	2 cut(s)	45, 152
PspPPI	RGGWCCY	1 cut(s)	45
PsyI	GACNNNGTC	1 cut(s)	43
SacI	GAGCTC	2 cut(s)	36, 234
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	2 cut(s)	80, 247
Sau96I	GGNCC	2 cut(s)	45, 152
SchI	GAGTC	1 cut(s)	11
SduI	GDGCHC	3 cut(s)	36, 234, 263
SetI	ASST	8 cut(s)	9, 36, 47, 89, 118, 154, 174, 234
SfaNI	GCATC	1 cut(s)	131
SinI	GGWCC	2 cut(s)	45, 152
SmlI	CTYRAG	2 cut(s)	35, 194
SmoI	CTYRAG	2 cut(s)	35, 194
SsiI	CCGC	2 cut(s)	66, 104
SspMI	CTAG	3 cut(s)	42, 167, 285
SstI	GAGCTC	2 cut(s)	36, 234
TaaI	ACNGT	3 cut(s)	99, 280, 335
TauI	GCSGC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	4 cut(s)	268, 283, 328, 340
TspDTI	ATGAA	2 cut(s)	82, 125
TspRI	CASTG	4 cut(s)	268, 283, 328, 340
Tth111I	GACNNNGTC	1 cut(s)	43
VpaK11BI	GGWCC	2 cut(s)	45, 152
XmnI	GAANNNNTTC	1 cut(s)	271
XspI	CTAG	3 cut(s)	42, 167, 285
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.