Rorug06G0065500

Leucine-rich repeat receptor-like tyrosine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008490
Physical Location & Seq
Forward (+)
8665547 .. 8666963
1417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0065500.1

Sequence Viewer

Length: 1311 bp
ATGGAGCAAGTTCTGCCGCGTGTCAGAGTAAGTGATCAAATAAGGCTAAGCATTGCCTGCAAGTCTTGGATGTCAATCGTTATGCGTAGAGACATCCGCAGTGCTTCTCATGAATTCCCATGGTTACTACTCCCTCAAACCCCACATTGCAGCAACAAGTACGTAAGCTTTGCCAGCGTGTCAGAGGGGAGAGTTGTCAAGTTGAAGCTACCTAAGCAAGTTCGTGGATGGTGGATTTATGGGTCTTCTAAAGGTTGGTTGATCATGATCAAGGAAAGAGGTCTAAATTCCAAGATGTGTCTACTTAACCCAATTTCAGGAGCCCTACTCCAACTTCCACCCTTGAGAACACTTCCTTTTCTGAAAGATTTTGTGAAAACCGAGGCCTGGAAACTTTTTGGTGCCAATGCATTCGACTTAAGCATTGCACTATCAACCTCTGATGGAATTGCTTTAGATTCAAAGCGTTGTACGGTAGCAGCAGTTTTTAATGATAAGTCGAAATTGAGTTTGTGCAGACCTGGAGACAGAACATGGAGTGACTTTCAAGTATTAGATACTAATCAAAACGACTGGATTGCTGATTTATTGTTTTCTTCCGGCAGTCTATATGTTTTGGTTCGTGGTGGTCAAAAGGAAAGCTTTGTAGACTCAGTTACTCAAACCTTGAACTTTAGCTTTGGAGATGCAGAAAATTTGAAAATGAAGTTGGTCTACGACAAGCATGAAAACAGGAACGTGAACATTATGCATGTTGTGGGAAGAAGAGAGGATATTATTGGTGACAATAATGAGAATAATGGAGGCGGCAATATGGAGAATGATGATGGTGAGCAACACATTCATCATGATAATGACGACGGAAATCTTGAGGTTGATGGGGTAGACATCGATCAGAATGATGAGGATGATGATGAAGCCAACAACTTAGAAGATATTGATCAGCAAAATGGAGGAAACATTATTTATGGTGATGAAGGCAGTAATGAGAATGATGGTGGCGACAGCAATATGGAAAATGATGATGGTGGTGAAGGCCATAACGACAATAATGATGTTGATGTGGGAGACATTAATCAGAATCCTGAAGGTGATGAGGAAGACAACAATAACCCAGAAGATAATGGTCAGCAAGGAGAAACTATTGATGAAGATGCACCGGGATTTAATGCATATATGACAACAAGGAGTTTTAGAGTATACAGGACTGACGACGACAACTTTATTCCATTGCAATGCTTGGGGGATCAATTATTCTTTCTTGGAGATTGTGGTTCCTTCTCCTTTGGAGCGGTCATTTCCAAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

436

Amino Acids

48.67

Weight (kDa)

4.4

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 57 - 215 9.4e-20 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 401
AccBSI CCGCTC 1 cut(s) 1292
AccI GTMKAC 5 cut(s) 301, 648, 714, 885, 1200
AccII CGCG 1 cut(s) 19
AciI CCGC 4 cut(s) 17, 97, 807, 1292
AclWI GGATC 1 cut(s) 1254
AcsI RAATTY 3 cut(s) 113, 286, 694
AcuI CTGAAG 1 cut(s) 1107
AfaI GTAC 2 cut(s) 161, 472
AfiI CCNNNNNNNGG 2 cut(s) 317, 387
AflII CTTAAG 1 cut(s) 418
AgsI TTSAA 5 cut(s) 205, 462, 548, 670, 700
AjnI CCWGG 2 cut(s) 386, 520
AjuI GAANNNNNNNTTGG 2 cut(s) 692, 724
AluBI AGCT 4 cut(s) 168, 208, 642, 678
AluI AGCT 4 cut(s) 168, 208, 642, 678
Alw26I GTCTC 3 cut(s) 84, 519, 1062
AlwI GGATC 1 cut(s) 1254
AoxI GGCC 2 cut(s) 384, 1036
ApeKI GCWGC 2 cut(s) 150, 479
ApoI RAATTY 3 cut(s) 113, 286, 694
AseI ATTAAT 1 cut(s) 1074
AsuC2I CCSGG 1 cut(s) 1161
AsuHPI GGTGA 5 cut(s) 794, 842, 983, 1043, 1103
BanI GGYRCC 1 cut(s) 401
BanII GRGCYC 1 cut(s) 325
BarI GAAGNNNNNNTAC 2 cut(s) 698, 730
BbsI GAAGAC 2 cut(s) 237, 1107
BbvI GCAGC 2 cut(s) 162, 491
BccI CCATC 6 cut(s) 222, 437, 821, 872, 989, 1019
BcgI CGANNNNNNTGC 2 cut(s) 560, 594
BciT130I CCWGG 2 cut(s) 388, 522
BclI TGATCA 4 cut(s) 34, 261, 267, 940
BcnI CCSGG 1 cut(s) 1161
BcoDI GTCTC 3 cut(s) 84, 519, 1062
BfrI CTTAAG 1 cut(s) 418
BisI GCNGC 4 cut(s) 17, 151, 480, 808
BlpI GCTNAGC 1 cut(s) 47
BlsI GCNGC 4 cut(s) 18, 152, 481, 809
Bme1390I CCNGG 3 cut(s) 388, 522, 1161
BmiI GGNNCC 3 cut(s) 322, 403, 1276
BmrFI CCNGG 3 cut(s) 388, 522, 1161
BmsI GCATC 2 cut(s) 676, 1144
BpiI GAAGAC 2 cut(s) 237, 1107
BplI GAGNNNNNCTC 2 cut(s) 312, 344
BpmI CTGGAG 1 cut(s) 543
Bpu10I CCTNAGC 1 cut(s) 213
Bpu1102I GCTNAGC 1 cut(s) 47
BpuEI CTTGAG 2 cut(s) 364, 890
BpuMI CCSGG 1 cut(s) 1161
Bsa29I ATCGAT 1 cut(s) 891
BsaAI YACGTR 1 cut(s) 163
BsaBI GATNNNNATC 4 cut(s) 74, 266, 561, 939
BsaJI CCNNGG 2 cut(s) 119, 381
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 387
Bse1I ACTGG 1 cut(s) 578
Bse3DI GCAATG 5 cut(s) 51, 145, 423, 1229, 1241
Bse8I GATNNNNATC 4 cut(s) 74, 266, 561, 939
BseBI CCWGG 2 cut(s) 388, 522
BseCI ATCGAT 1 cut(s) 891
BseDI CCNNGG 2 cut(s) 119, 381
BseGI GGATG 4 cut(s) 75, 93, 233, 913
BseJI GATNNNNATC 4 cut(s) 74, 266, 561, 939
BseLI CCNNNNNNNGG 2 cut(s) 317, 387
BseMI GCAATG 5 cut(s) 51, 145, 423, 1229, 1241
BseMII CTCAG 1 cut(s) 666
BseNI ACTGG 1 cut(s) 578
BseXI GCAGC 2 cut(s) 162, 491
BsgI GTGCAG 1 cut(s) 535
Bsh1236I CGCG 1 cut(s) 19
BshFI GGCC 2 cut(s) 386, 1038
BshNI GGYRCC 1 cut(s) 401
BshVI ATCGAT 1 cut(s) 891
BsiSI CCGG 2 cut(s) 600, 1160
BslI CCNNNNNNNGG 2 cut(s) 317, 387
BsmAI GTCTC 3 cut(s) 84, 519, 1062
BsmI GAATGC 1 cut(s) 410
BsnI GGCC 2 cut(s) 386, 1038
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 6 cut(s) 34, 261, 267, 892, 940, 1246
Bsp1720I GCTNAGC 1 cut(s) 47
Bsp19I CCATGG 1 cut(s) 119
BspACI CCGC 4 cut(s) 17, 97, 807, 1292
BspANI GGCC 2 cut(s) 386, 1038
BspCNI CTCAG 1 cut(s) 665
BspDI ATCGAT 1 cut(s) 891
BspFNI CGCG 1 cut(s) 19
BspHI TCATGA 3 cut(s) 109, 264, 847
BspLI GGNNCC 3 cut(s) 322, 403, 1276
BspPI GGATC 1 cut(s) 1254
BspT107I GGYRCC 1 cut(s) 401
BspTI CTTAAG 1 cut(s) 418
BsrBI CCGCTC 1 cut(s) 1292
BsrDI GCAATG 5 cut(s) 51, 145, 423, 1229, 1241
BsrI ACTGG 1 cut(s) 578
BssECI CCNNGG 2 cut(s) 119, 381
BssMI GATC 6 cut(s) 34, 261, 267, 892, 940, 1246
BssNAI GTATAC 1 cut(s) 1201
BssT1I CCWWGG 1 cut(s) 119
Bst1107I GTATAC 1 cut(s) 1201
Bst2UI CCWGG 2 cut(s) 388, 522
Bst4CI ACNGT 1 cut(s) 475
Bst6I CTCTTC 1 cut(s) 760
BstAFI CTTAAG 1 cut(s) 418
BstAPI GCANNNNNTGC 2 cut(s) 13, 57
BstBAI YACGTR 1 cut(s) 163
BstC8I GCNNGC 2 cut(s) 58, 175
BstDEI CTNAG 4 cut(s) 47, 213, 652, 928
BstDSI CCRYGG 1 cut(s) 119
BstF5I GGATG 4 cut(s) 75, 93, 233, 913
BstFNI CGCG 1 cut(s) 19
BstKTI GATC 6 cut(s) 37, 264, 270, 895, 943, 1249
BstMAI GTCTC 3 cut(s) 84, 519, 1062
BstMBI GATC 6 cut(s) 34, 261, 267, 892, 940, 1246
BstMWI GCNNNNNNNGC 4 cut(s) 13, 57, 174, 214
BstNI CCWGG 2 cut(s) 388, 522
BstNSI RCATGY 1 cut(s) 755
BstSCI CCNGG 3 cut(s) 386, 520, 1159
BstSNI TACGTA 1 cut(s) 163
BstUI CGCG 1 cut(s) 19
BstV1I GCAGC 2 cut(s) 162, 491
BstV2I GAAGAC 2 cut(s) 237, 1107
BstZ17I GTATAC 1 cut(s) 1201
Bsu15I ATCGAT 1 cut(s) 891
BsuRI GGCC 2 cut(s) 386, 1038
BsuTUI ATCGAT 1 cut(s) 891
BtgI CCRYGG 1 cut(s) 119
BtsCI GGATG 4 cut(s) 75, 93, 233, 913
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 106
Cac8I GCNNGC 2 cut(s) 58, 175
CciI TCATGA 3 cut(s) 109, 264, 847
ClaI ATCGAT 1 cut(s) 891
Csp6I GTAC 2 cut(s) 160, 471
CviAII CATG 7 cut(s) 110, 120, 265, 534, 725, 752, 848
CviJI RGCY 9 cut(s) 46, 168, 208, 323, 386, 642, 678, 920, 1038
CviKI_1 RGCY 9 cut(s) 46, 168, 208, 323, 386, 642, 678, 920, 1038
CviQI GTAC 2 cut(s) 160, 471
DdeI CTNAG 4 cut(s) 47, 213, 652, 928
DpnI GATC 6 cut(s) 36, 263, 269, 894, 942, 1248
DpnII GATC 6 cut(s) 34, 261, 267, 892, 940, 1246
Eam1104I CTCTTC 1 cut(s) 760
EarI CTCTTC 1 cut(s) 760
Eco105I TACGTA 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 119
Eco147I AGGCCT 1 cut(s) 386
Eco24I GRGCYC 1 cut(s) 325
Eco57I CTGAAG 1 cut(s) 1107
EcoRI GAATTC 1 cut(s) 113
EcoRII CCWGG 2 cut(s) 386, 520
EcoT14I CCWWGG 1 cut(s) 119
EcoT22I ATGCAT 3 cut(s) 412, 753, 1174
EcoT38I GRGCYC 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 119
FaeI CATG 7 cut(s) 113, 123, 268, 537, 728, 755, 851
FalI AAGNNNNNCTT 2 cut(s) 626, 658
FatI CATG 7 cut(s) 109, 119, 264, 533, 724, 751, 847
FbaI TGATCA 4 cut(s) 34, 261, 267, 940
FblI GTMKAC 5 cut(s) 301, 648, 714, 885, 1200
Fnu4HI GCNGC 4 cut(s) 17, 151, 480, 808
FokI GGATG 4 cut(s) 80, 82, 240, 920
FriOI GRGCYC 1 cut(s) 325
Fsp4HI GCNGC 4 cut(s) 17, 151, 480, 808
GluI GCNGC 4 cut(s) 17, 151, 480, 808
GsuI CTGGAG 1 cut(s) 543
HaeIII GGCC 2 cut(s) 386, 1038
HapII CCGG 2 cut(s) 600, 1160
Hin1II CATG 7 cut(s) 113, 123, 268, 537, 728, 755, 851
HindIII AAGCTT 2 cut(s) 166, 640
HinfI GANTC 3 cut(s) 458, 650, 1081
HpaII CCGG 2 cut(s) 600, 1160
HphI GGTGA 5 cut(s) 794, 842, 983, 1043, 1103
Hpy166II GTNNAC 6 cut(s) 302, 649, 715, 742, 886, 1201
Hpy188I TCNGA 6 cut(s) 26, 184, 363, 442, 897, 1080
Hpy188III TCNNGA 6 cut(s) 110, 265, 318, 848, 869, 1085
Hpy8I GTNNAC 6 cut(s) 302, 649, 715, 742, 886, 1201
Hpy99I CGWCG 2 cut(s) 863, 1217
HpyAV CCTTC 4 cut(s) 971, 1028, 1082, 1288
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4IV ACGT 2 cut(s) 162, 738
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 57, 174, 214
HpyF3I CTNAG 4 cut(s) 47, 213, 652, 928
HpySE526I ACGT 2 cut(s) 162, 738
Hsp92II CATG 7 cut(s) 113, 123, 268, 537, 728, 755, 851
Ksp22I TGATCA 4 cut(s) 34, 261, 267, 940
Kzo9I GATC 6 cut(s) 34, 261, 267, 892, 940, 1246
LmnI GCTCC 3 cut(s) 4, 320, 1289
Lsp1109I GCAGC 2 cut(s) 162, 491
LweI GCATC 2 cut(s) 676, 1144
MaeII ACGT 2 cut(s) 162, 738
MaeIII GTNAC 4 cut(s) 123, 539, 655, 782
MalI GATC 6 cut(s) 36, 263, 269, 894, 942, 1248
MbiI CCGCTC 1 cut(s) 1292
MboI GATC 6 cut(s) 34, 261, 267, 892, 940, 1246
MboII GAAGA 8 cut(s) 237, 588, 774, 777, 944, 1112, 1130, 1163
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 7 cut(s) 113, 286, 312, 447, 503, 694, 1250
MlyI GAGTC 1 cut(s) 644
MmeI TCCRAC 1 cut(s) 355
Mph1103I ATGCAT 3 cut(s) 412, 753, 1174
MseI TTAA 5 cut(s) 306, 419, 489, 1074, 1167
MslI CAYNNNNRTG 2 cut(s) 852, 1234
MspCI CTTAAG 1 cut(s) 418
MspI CCGG 2 cut(s) 600, 1160
MspR9I CCNGG 3 cut(s) 388, 522, 1161
Mva1269I GAATGC 1 cut(s) 410
MvaI CCWGG 2 cut(s) 388, 522
MvnI CGCG 1 cut(s) 19
MwoI GCNNNNNNNGC 4 cut(s) 13, 57, 174, 214
NciI CCSGG 1 cut(s) 1161
NcoI CCATGG 1 cut(s) 119
NdeII GATC 6 cut(s) 34, 261, 267, 892, 940, 1246
NlaIII CATG 7 cut(s) 113, 123, 268, 537, 728, 755, 851
NlaIV GGNNCC 3 cut(s) 322, 403, 1276
NmuCI GTSAC 2 cut(s) 539, 782
NsiI ATGCAT 3 cut(s) 412, 753, 1174
NspI RCATGY 1 cut(s) 755
PagI TCATGA 3 cut(s) 109, 264, 847
PceI AGGCCT 1 cut(s) 386
PctI GAATGC 1 cut(s) 410
PfeI GAWTC 2 cut(s) 458, 1081
PkrI GCNGC 4 cut(s) 18, 152, 481, 809
PleI GAGTC 1 cut(s) 644
PpsI GAGTC 1 cut(s) 644
Ppu21I YACGTR 1 cut(s) 163
PshBI ATTAAT 1 cut(s) 1074
Psp6I CCWGG 2 cut(s) 386, 520
PspGI CCWGG 2 cut(s) 386, 520
PspN4I GGNNCC 3 cut(s) 322, 403, 1276
RsaI GTAC 2 cut(s) 161, 472
RsaNI GTAC 2 cut(s) 160, 471
RseI CAYNNNNRTG 2 cut(s) 852, 1234
SaqAI TTAA 5 cut(s) 306, 419, 489, 1074, 1167
SatI GCNGC 4 cut(s) 17, 151, 480, 808
Sau3AI GATC 6 cut(s) 34, 261, 267, 892, 940, 1246
SchI GAGTC 1 cut(s) 644
ScrFI CCNGG 3 cut(s) 388, 522, 1161
SduI GDGCHC 1 cut(s) 325
SfaNI GCATC 2 cut(s) 676, 1144
SmiMI CAYNNNNRTG 2 cut(s) 852, 1234
SmlI CTYRAG 3 cut(s) 343, 418, 869
SmoI CTYRAG 3 cut(s) 343, 418, 869
SnaBI TACGTA 1 cut(s) 163
Sse9I AATT 7 cut(s) 113, 286, 312, 447, 503, 694, 1250
SseBI AGGCCT 1 cut(s) 386
SsiI CCGC 4 cut(s) 17, 97, 807, 1292
StuI AGGCCT 1 cut(s) 386
StyD4I CCNGG 3 cut(s) 386, 520, 1159
StyI CCWWGG 1 cut(s) 119
TaaI ACNGT 1 cut(s) 475
TaiI ACGT 2 cut(s) 165, 741
TaqI TCGA 3 cut(s) 414, 500, 891
TasI AATT 7 cut(s) 113, 286, 312, 447, 503, 694, 1250
TauI GCSGC 2 cut(s) 19, 810
TfiI GAWTC 2 cut(s) 458, 1081
Tru1I TTAA 5 cut(s) 306, 419, 489, 1074, 1167
Tru9I TTAA 5 cut(s) 306, 419, 489, 1074, 1167
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 2 cut(s) 539, 782
TseI GCWGC 2 cut(s) 150, 479
Tsp45I GTSAC 2 cut(s) 539, 782
TspDTI ATGAA 7 cut(s) 126, 719, 741, 833, 930, 990, 1164
TspGWI ACGGA 1 cut(s) 876
TspRI CASTG 1 cut(s) 106
Vha464I CTTAAG 1 cut(s) 418
VspI ATTAAT 1 cut(s) 1074
XapI RAATTY 3 cut(s) 113, 286, 694
XceI RCATGY 1 cut(s) 755
XmiI GTMKAC 5 cut(s) 301, 648, 714, 885, 1200
Zsp2I ATGCAT 3 cut(s) 412, 753, 1174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.