MD10G1047000.v1.1

Leucine-rich repeat receptor-like tyrosine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0008490
Physical Location & Seq
Reverse (-)
6278923 .. 6281858
2936 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1047000.v1.1.491

Sequence Viewer

Length: 2766 bp
ATGATCGATCTCTCCAACAGCCTCAACGCTTCTGCTGCTGGTGCTGTTCCATGGGACGTCAACAAAGAACCAAACCCATGTTCGTGGAAGGGAGTCGGGTGCAATTCCCCGACCAATTCATCAGTTATCCGGATTTCGTTGTCCGGGCATTCTCTATCTTCCTCGGACTTTCTGCCGCTCGTTTGTCGGATTGAGTCTCTGCAGGTTCTTGATGTGTCCAGCAACCGTCTGACCACAATTCCGCCTGGGTTTATCTCAGCTTGTGGAAAGCTAGGTGAGTTAAAGCTGCTCAATTTTAGTCTGAATAATTTGGTGGGTCCTCTGCCCGAGTTTGTTGGGTTTTCGGGTTTGGAAGCTCTGGACTTTGCTCGGAATAACTTGAGTGGAAGCATTGGCTCCGAGTTGGACGGGTTGGTCAAGCTCAGAAGCTTGAACCTTACCTTCAACCATTTTGCTGGGCATGTTCCAACCCGTCTCGGAAAGTCCAAGGTTTTGGAGGAGCTTGAGCTTTCTGTGAATACGTTTGATGGTCCTATCCCTGCTGAACTTGTGGGATATAAGAATTTGACTCTCATTGATCTTAGTGTAAATCGGCTTACCGGGAGTATTCCTGCTTGGATCGGAGAGCTCTCCAAGTTGGAGGTTTTGATTCTTTCGGCCAATAAGTTATCCGGCGGAATCCCACTAAGCATTTCCAATATCACAAGCCTTTGGAGATTTGCAGCAAATTCTAACGATTTCAATGAGACGATTCCTGGTGGCATTACGGAGCATTTGAAAAACTTGGATCTCAGTTATAATAAATTGAATGGGTCGATTCCATCGGACCTCTTGTCGGAAAGGAATCTGCAGACTGTGGATTTGTCGAATAATAGATTAGAGGGACCGGTACCTGAAGCTCTGTCTCCGAGCTTGGTCAGGCTGAGACTGGGAAGCAATTCGCTTGATGGGAAGATACCTTCTGCAGCAATTGCAACACATGAAAACTTGACCTACTTGGAGATGGAAAACAATAACTTGACTGGATCAATTCCTCCTGAATTGGGTGATTGCCGGAAATTGGCGCTGCTGAATTTGGCTCAGAATCAACTGTCTGGGGCTTTGCCGGTGAAGTTGGGTAACCTTAGCAGTCTTGAGGTCTTGAGACTTCAATCGAACAATTTGAGTGGGGCAATTCCATTTCAAATTACTCAACTACCCAAGTTGTCCATTCTTAATATCAGCTGGAATTCTCTCAACGGCTCAATACCACCTTCAGTTTCAAACATGCAGAATCTTATTAACATGAACTTACAAGGCAACAAGCTCAGCGGTTCCATTCCCGTCGGTATTGCCTCCATGGATTCTCTGATGGAACTCCAACTTGGAGAAAATCAGTTAAGTGGTGACATTCCAATCATGCCGATGAGTTTGCAGATTGCTTTGAATCTCAGCAGCAATCTTTTTCAAGGACCTATTCCGGAAACTCTTTGGAGGCTCCGTGGATTAGAAATTCTGGATCTCTCAAATAACAAATTCTCAGGTGAGATACCTGATTTTTTGACTAGATTGGGAACCTTGACACAGTTGTCACTTTCTAACAATGAGCTCTCTGGAGAAATTCCGGAGTTCCATTCTTGGGTCATGGTGGACACAAGTGGGAACAAGGCTTTGATAAACAGAACAACAATAAACACTCCACCCCAATTGGAGAAGAAGAAAAAATCATATGCAGCGACAATTGTTCTTGCCGTTGTAGCAGCAGCTGTGGTTGCTTTTGGAGCGATCTCCATTGTTGCCGTATCAATATCACGGCAAAATTACAGGGTTAATGATGAACAAGTGCAAACAGAGGAAGAACTTGCTGTTCCTGAGGTCCTCCAGGGCAATCTATTAACTGCAAATGGTATTCATAGATCAAACATCGATTTCACTAGAGCGATGGAAGTAGTTTCCGACCAGTCAAACGTTGTGCTGAAGACTAGGTTTTCAACTTACTACAAAGCCATCATGCCGTCTGGAGCAAGCTACTTTGTCAAGAAGCTCAACTGGAGTGACAAGATATTCCAACTGGGCAGCCACGATAGGTTTGCCCAAGATTTAGAGGTCTTCGGGAAACTAAGCAATTCCAATGTCATGAATCCTCTGGCCTATGTCTTGACTGGTGACAGTGCTAATCTGTTCTATGAATTTGCTCCAAAAGGAACCCTTTTTGATGCTCTTCATGGTATCTCGGGCGATGACATGGATTGGGGGAGCCGGTATAGTATTGCAGTTGGAGTAGCGCAGGGTCTTTCTTTTCTTCATGGGTGCACTCCAAGTCCAATACTCCTCCTTGACTTGTCAAGCAAAAGCATTTTGCTCAAGTCCCTCAAGGAGCCTTTGATTGCAGAAGCTGAGCTCCTGAAGGTGATCGACCCTTCAAAGAGCACCGGAAGCCTTTCTACTATTGCTGGTTCTTCTGGCTACATTCCTCCAGAGTATGCATACACTATGGTTGTGACAATGGCCGGGAGTATCTACAGCTTCGGGGTCGTTCTGCTGGAGTTGCTGACGGGAAAGCCAGCAGTTAGTGAGGGGATTGAGTTGGCCAAGTGGGTCTTGAGTAACTCAGCGCAGCAAGATAAAAGGGATCACATTCTTGATTACAGTATCAGCAGAACATCAACTGCTGTCCGAAACCAGATGCTTGCGGTCCTGAAAATCGCTCTTGCTTGTGTTAGCGTATCACCCGAAGCAAGGCCAAGAATGAAGAGTGTGCTTACGAGGCTCCTCAATGCAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

922

Amino Acids

99.33

Weight (kDa)

5.73

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 63 - 220 7.7e-06 Leucine-rich repeat region
LRR_14 PF23598 346 - 456 8.1e-08 Leucine-rich repeat region
Pkinase PF00069 656 - 914 2.2e-14 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 685 - 917 5.8e-15 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 798
AasI GACNNNNNNGTC 2 cut(s) 413, 1567
AatII GACGTC 1 cut(s) 60
Acc36I ACCTGC 1 cut(s) 193
Acc65I GGTACC 1 cut(s) 889
AccB1I GGYRCC 1 cut(s) 889
AccBSI CCGCTC 1 cut(s) 178
AccIII TCCGGA 3 cut(s) 129, 1459, 1603
AciI CCGC 5 cut(s) 176, 242, 675, 1311, 2672
AclI AACGTT 1 cut(s) 1947
AclWI GGATC 5 cut(s) 626, 795, 1033, 1506, 2619
AcoI YGGCCR 3 cut(s) 657, 2487, 2568
AcsI RAATTY 8 cut(s) 562, 727, 1072, 1228, 1491, 1514, 1599, 2168
AcuI CTGAAG 4 cut(s) 915, 1239, 1976, 2405
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 1 cut(s) 891
AfiI CCNNNNNNNGG 5 cut(s) 835, 1043, 1060, 1618, 2718
AgeI ACCGGT 1 cut(s) 886
AhdI GACNNNNNGTC 1 cut(s) 832
AjnI CCWGG 3 cut(s) 244, 754, 1860
AjuI GAANNNNNNNTTGG 4 cut(s) 64, 96, 1347, 1379
Alw21I GWGCWC 5 cut(s) 630, 1590, 2294, 2382, 2411
Alw26I GTCTC 6 cut(s) 201, 479, 740, 909, 919, 1138
Alw44I GTGCAC 1 cut(s) 2290
AlwI GGATC 5 cut(s) 626, 795, 1033, 1506, 2619
AlwNI CAGNNNCTG 2 cut(s) 1745, 2375
Ama87I CYCGRG 2 cut(s) 326, 2212
Aor13HI TCCGGA 3 cut(s) 129, 1459, 1603
AoxI GGCC 5 cut(s) 657, 2127, 2487, 2568, 2720
ApaLI GTGCAC 1 cut(s) 2290
ApoI RAATTY 8 cut(s) 562, 727, 1072, 1228, 1491, 1514, 1599, 2168
ArsI GACNNNNNNTTYG 2 cut(s) 844, 876
AsiGI ACCGGT 1 cut(s) 886
Asp700I GAANNNNTTC 2 cut(s) 937, 2419
Asp718I GGTACC 1 cut(s) 889
AspLEI GCGC 3 cut(s) 1066, 2266, 2596
AspS9I GGNCC 7 cut(s) 317, 530, 826, 884, 1451, 1855, 2674
AsuC2I CCSGG 3 cut(s) 145, 601, 2491
AsuHPI GGTGA 8 cut(s) 287, 1058, 1120, 1397, 1535, 2156, 2401, 2700
AvaI CYCGRG 2 cut(s) 326, 2212
AvaII GGWCC 7 cut(s) 317, 530, 826, 884, 1451, 1855, 2674
AxyI CCTNAGG 1 cut(s) 1851
BaeGI GKGCMC 1 cut(s) 2294
BalI TGGCCA 1 cut(s) 2570
BanI GGYRCC 1 cut(s) 889
BanII GRGCYC 3 cut(s) 630, 1590, 2382
BarI GAAGNNNNNNTAC 2 cut(s) 2407, 2439
BbsI GAAGAC 2 cut(s) 1964, 2080
Bbv12I GWGCWC 5 cut(s) 630, 1590, 2294, 2382, 2411
BccI CCATC 7 cut(s) 521, 829, 941, 997, 1345, 1915, 1994
BceAI ACGGC 5 cut(s) 1255, 1715, 1763, 1808, 1978
BcgI CGANNNNNNTGC 4 cut(s) 1393, 1427, 2051, 2085
BciT130I CCWGG 3 cut(s) 246, 756, 1862
BcnI CCSGG 3 cut(s) 145, 601, 2491
BcoDI GTCTC 6 cut(s) 201, 479, 740, 909, 919, 1138
BfaI CTAG 4 cut(s) 272, 1545, 1914, 1962
BfmI CTRYAG 4 cut(s) 200, 848, 963, 2500
BfoI RGCGCY 1 cut(s) 1067
BfuAI ACCTGC 1 cut(s) 193
BlpI GCTNAGC 2 cut(s) 1307, 2376
Bme1390I CCNGG 6 cut(s) 145, 246, 601, 756, 1862, 2491
Bme18I GGWCC 7 cut(s) 317, 530, 826, 884, 1451, 1855, 2674
BmeRI GACNNNNNGTC 1 cut(s) 832
BmeT110I CYCGRG 2 cut(s) 326, 2212
BmgT120I GGNCC 7 cut(s) 317, 530, 826, 884, 1451, 1855, 2674
BmrFI CCNGG 6 cut(s) 145, 246, 601, 756, 1862, 2491
BmrI ACTGGG 2 cut(s) 938, 2060
BmsI GCATC 2 cut(s) 2185, 2655
BmuI ACTGGG 2 cut(s) 938, 2060
BpiI GAAGAC 2 cut(s) 1964, 2080
BpmI CTGGAG 6 cut(s) 1614, 1844, 2019, 2050, 2439, 2543
Bpu10I CCTNAGC 1 cut(s) 1124
Bpu1102I GCTNAGC 2 cut(s) 1307, 2376
BpuEI CTTGAG 7 cut(s) 400, 524, 1154, 1162, 2327, 2336, 2602
BpuMI CCSGG 3 cut(s) 145, 601, 2491
Bsa29I ATCGAT 2 cut(s) 6, 1905
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 7 cut(s) 50, 162, 245, 486, 1338, 1480, 1861
BsaWI WCCGGW 5 cut(s) 129, 886, 1459, 1603, 2411
BsaXI ACNNNNNCTCC 2 cut(s) 1465, 1495
Bsc4I CCNNNNNNNGG 5 cut(s) 835, 1043, 1060, 1618, 2718
Bse118I RCCGGY 3 cut(s) 886, 1105, 2238
Bse1I ACTGG 6 cut(s) 933, 1027, 1939, 2033, 2055, 2146
Bse21I CCTNAGG 1 cut(s) 1851
BseAI TCCGGA 3 cut(s) 129, 1459, 1603
BseBI CCWGG 3 cut(s) 246, 756, 1862
BseCI ATCGAT 2 cut(s) 6, 1905
BseDI CCNNGG 7 cut(s) 50, 162, 245, 486, 1338, 1480, 1861
BseLI CCNNNNNNNGG 5 cut(s) 835, 1043, 1060, 1618, 2718
BseNI ACTGG 6 cut(s) 933, 1027, 1939, 2033, 2055, 2146
BseRI GAGGAG 3 cut(s) 512, 2300, 2741
BseSI GKGCMC 1 cut(s) 2294
BseYI CCCAGC 1 cut(s) 455
BshFI GGCC 5 cut(s) 659, 2129, 2489, 2570, 2722
BshNI GGYRCC 1 cut(s) 889
BshTI ACCGGT 1 cut(s) 886
BshVI ATCGAT 2 cut(s) 6, 1905
BsiHKAI GWGCWC 5 cut(s) 630, 1590, 2294, 2382, 2411
BsiHKCI CYCGRG 2 cut(s) 326, 2212
BslFI GGGAC 3 cut(s) 68, 897, 2332
BslI CCNNNNNNNGG 5 cut(s) 835, 1043, 1060, 1618, 2718
BsmAI GTCTC 6 cut(s) 201, 479, 740, 909, 919, 1138
BsmBI CGTCTC 2 cut(s) 479, 740
BsmFI GGGAC 3 cut(s) 68, 897, 2332
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 5 cut(s) 659, 2129, 2489, 2570, 2722
BsoBI CYCGRG 2 cut(s) 326, 2212
Bsp1286I GDGCHC 5 cut(s) 630, 1590, 2294, 2382, 2411
Bsp13I TCCGGA 3 cut(s) 129, 1459, 1603
Bsp1720I GCTNAGC 2 cut(s) 1307, 2376
Bsp19I CCATGG 2 cut(s) 50, 1338
BspACI CCGC 5 cut(s) 176, 242, 675, 1311, 2672
BspANI GGCC 5 cut(s) 659, 2129, 2489, 2570, 2722
BspDI ATCGAT 2 cut(s) 6, 1905
BspEI TCCGGA 3 cut(s) 129, 1459, 1603
BspHI TCATGA 1 cut(s) 2115
BspMAI CTGCAG 3 cut(s) 204, 852, 967
BspMI ACCTGC 1 cut(s) 193
BspPI GGATC 5 cut(s) 626, 795, 1033, 1506, 2619
BspQI GCTCTTC 1 cut(s) 2205
BspT107I GGYRCC 1 cut(s) 889
BsrBI CCGCTC 1 cut(s) 178
BsrFI RCCGGY 3 cut(s) 886, 1105, 2238
BsrI ACTGG 6 cut(s) 933, 1027, 1939, 2033, 2055, 2146
BssAI RCCGGY 3 cut(s) 886, 1105, 2238
BssECI CCNNGG 7 cut(s) 50, 162, 245, 486, 1338, 1480, 1861
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 3 cut(s) 50, 486, 1338
Bst2UI CCWGG 3 cut(s) 246, 756, 1862
Bst4CI ACNGT 6 cut(s) 227, 856, 1092, 1566, 2150, 2630
Bst6I CTCTTC 2 cut(s) 2205, 2726
BstACI GRCGYC 1 cut(s) 57
BstAPI GCANNNNNTGC 1 cut(s) 971
BstC8I GCNNGC 3 cut(s) 2005, 2544, 2670
BstDSI CCRYGG 3 cut(s) 50, 1338, 1480
BstEII GGTNACC 1 cut(s) 1118
BstH2I RGCGCY 1 cut(s) 1067
BstHHI GCGC 3 cut(s) 1066, 2266, 2596
BstMAI GTCTC 6 cut(s) 201, 479, 740, 909, 919, 1138
BstMWI GCNNNNNNNGC 9 cut(s) 35, 41, 971, 1736, 1751, 1760, 2415, 2527, 2746
BstNI CCWGG 3 cut(s) 246, 756, 1862
BstNSI RCATGY 2 cut(s) 464, 1270
BstPI GGTNACC 1 cut(s) 1118
BstSCI CCNGG 6 cut(s) 143, 244, 599, 754, 1860, 2489
BstSFI CTRYAG 4 cut(s) 200, 848, 963, 2500
BstSLI GKGCMC 1 cut(s) 2294
BstV2I GAAGAC 2 cut(s) 1964, 2080
BstX2I RGATCY 2 cut(s) 787, 1498
BstXI CCANNNNNNTGG 3 cut(s) 84, 455, 493
BstYI RGATCY 2 cut(s) 787, 1498
Bsu15I ATCGAT 2 cut(s) 6, 1905
Bsu36I CCTNAGG 1 cut(s) 1851
BsuRI GGCC 5 cut(s) 659, 2129, 2489, 2570, 2722
BsuTUI ATCGAT 2 cut(s) 6, 1905
BtgI CCRYGG 3 cut(s) 50, 1338, 1480
BtgZI GCGATG 2 cut(s) 1934, 2232
BtsIMutI CAGTG 1 cut(s) 2155
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 3 cut(s) 2005, 2544, 2670
CaiI CAGNNNCTG 2 cut(s) 1745, 2375
CciI TCATGA 1 cut(s) 2115
CfoI GCGC 3 cut(s) 1066, 2266, 2596
Cfr10I RCCGGY 3 cut(s) 886, 1105, 2238
Cfr13I GGNCC 7 cut(s) 317, 530, 826, 884, 1451, 1855, 2674
ClaI ATCGAT 2 cut(s) 6, 1905
Csp6I GTAC 1 cut(s) 890
CspAI ACCGGT 1 cut(s) 886
CspCI CAANNNNNGTGG 4 cut(s) 1147, 1182, 1668, 1703
CviQI GTAC 1 cut(s) 890
DrdI GACNNNNNNGTC 2 cut(s) 413, 1567
DriI GACNNNNNGTC 1 cut(s) 832
DseDI GACNNNNNNGTC 2 cut(s) 413, 1567
EaeI YGGCCR 3 cut(s) 657, 2487, 2568
Eam1104I CTCTTC 2 cut(s) 2205, 2726
Eam1105I GACNNNNNGTC 1 cut(s) 832
EarI CTCTTC 2 cut(s) 2205, 2726
EciI GGCGGA 2 cut(s) 231, 690
Ecl136II GAGCTC 3 cut(s) 628, 1588, 2380
Eco130I CCWWGG 3 cut(s) 50, 486, 1338
Eco24I GRGCYC 3 cut(s) 630, 1590, 2382
Eco47I GGWCC 7 cut(s) 317, 530, 826, 884, 1451, 1855, 2674
Eco53kI GAGCTC 3 cut(s) 628, 1588, 2380
Eco57I CTGAAG 4 cut(s) 915, 1239, 1976, 2405
Eco81I CCTNAGG 1 cut(s) 1851
Eco88I CYCGRG 2 cut(s) 326, 2212
Eco91I GGTNACC 1 cut(s) 1118
EcoICRI GAGCTC 3 cut(s) 628, 1588, 2380
EcoO109I RGGNCCY 3 cut(s) 317, 1451, 1855
EcoO65I GGTNACC 1 cut(s) 1118
EcoRI GAATTC 1 cut(s) 1228
EcoRII CCWGG 3 cut(s) 244, 754, 1860
EcoT14I CCWWGG 3 cut(s) 50, 486, 1338
EcoT22I ATGCAT 1 cut(s) 2467
EcoT38I GRGCYC 3 cut(s) 630, 1590, 2382
ErhI CCWWGG 3 cut(s) 50, 486, 1338
Esp3I CGTCTC 2 cut(s) 479, 740
FalI AAGNNNNNCTT 4 cut(s) 2172, 2204, 2564, 2596
FaqI GGGAC 3 cut(s) 68, 897, 2332
FauNDI CATATG 1 cut(s) 1708
FriOI GRGCYC 3 cut(s) 630, 1590, 2382
FspBI CTAG 4 cut(s) 272, 1545, 1914, 1962
GlaI GCGC 3 cut(s) 1065, 2265, 2595
GsaI CCCAGC 1 cut(s) 459
GsuI CTGGAG 6 cut(s) 1614, 1844, 2019, 2050, 2439, 2543
HaeII RGCGCY 1 cut(s) 1067
HaeIII GGCC 5 cut(s) 659, 2129, 2489, 2570, 2722
HhaI GCGC 3 cut(s) 1066, 2266, 2596
Hin1I GRCGYC 1 cut(s) 57
Hin6I GCGC 3 cut(s) 1064, 2264, 2594
HinP1I GCGC 3 cut(s) 1064, 2264, 2594
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HindIII AAGCTT 1 cut(s) 427
HphI GGTGA 8 cut(s) 287, 1058, 1120, 1397, 1535, 2156, 2401, 2700
Hpy166II GTNNAC 3 cut(s) 61, 1630, 2292
Hpy8I GTNNAC 3 cut(s) 61, 1630, 2292
Hpy99I CGWCG 1 cut(s) 1328
HpyAV CCTTC 6 cut(s) 82, 451, 969, 1263, 2380, 2409
HpyCH4III ACNGT 6 cut(s) 227, 856, 1092, 1566, 2150, 2630
HpyCH4IV ACGT 3 cut(s) 57, 521, 1947
HpyF10VI GCNNNNNNNGC 9 cut(s) 35, 41, 971, 1736, 1751, 1760, 2415, 2527, 2746
HpySE526I ACGT 3 cut(s) 57, 521, 1947
Hsp92I GRCGYC 1 cut(s) 57
HspAI GCGC 3 cut(s) 1064, 2264, 2594
Kpn2I TCCGGA 3 cut(s) 129, 1459, 1603
KpnI GGTACC 1 cut(s) 893
LguI GCTCTTC 1 cut(s) 2205
LweI GCATC 2 cut(s) 2185, 2655
MaeI CTAG 4 cut(s) 272, 1545, 1914, 1962
MaeII ACGT 3 cut(s) 57, 521, 1947
MaeIII GTNAC 7 cut(s) 1118, 1385, 1569, 2033, 2144, 2479, 2585
MbiI CCGCTC 1 cut(s) 178
MfeI CAATTG 3 cut(s) 969, 1685, 1719
MflI RGATCY 2 cut(s) 787, 1498
MhlI GDGCHC 5 cut(s) 630, 1590, 2294, 2382, 2411
MlsI TGGCCA 1 cut(s) 2570
MluNI TGGCCA 1 cut(s) 2570
MlyI GAGTC 3 cut(s) 102, 203, 562
Mox20I TGGCCA 1 cut(s) 2570
Mph1103I ATGCAT 1 cut(s) 2467
MroI TCCGGA 3 cut(s) 129, 1459, 1603
MroXI GAANNNNTTC 2 cut(s) 937, 2419
MscI TGGCCA 1 cut(s) 2570
MseI TTAA 6 cut(s) 281, 1215, 1281, 1379, 1809, 1874
MslI CAYNNNNRTG 2 cut(s) 82, 1403
Msp20I TGGCCA 1 cut(s) 2570
MspA1I CMGCKG 3 cut(s) 1224, 1311, 1745
MspR9I CCNGG 6 cut(s) 145, 246, 601, 756, 1862, 2491
MunI CAATTG 3 cut(s) 969, 1685, 1719
Mva1269I GAATGC 1 cut(s) 148
MvaI CCWGG 3 cut(s) 246, 756, 1862
MwoI GCNNNNNNNGC 9 cut(s) 35, 41, 971, 1736, 1751, 1760, 2415, 2527, 2746
NciI CCSGG 3 cut(s) 145, 601, 2491
NcoI CCATGG 2 cut(s) 50, 1338
NdeI CATATG 1 cut(s) 1708
NmuCI GTSAC 5 cut(s) 1385, 1569, 2033, 2144, 2479
NsiI ATGCAT 1 cut(s) 2467
NspI RCATGY 2 cut(s) 464, 1270
PagI TCATGA 1 cut(s) 2115
PciSI GCTCTTC 1 cut(s) 2205
PctI GAATGC 1 cut(s) 148
PdmI GAANNNNTTC 2 cut(s) 937, 2419
PinAI ACCGGT 1 cut(s) 886
PleI GAGTC 3 cut(s) 101, 202, 562
PpsI GAGTC 3 cut(s) 101, 202, 562
PpuMI RGGWCCY 3 cut(s) 317, 1451, 1855
PsiI TTATAA 1 cut(s) 798
Psp124BI GAGCTC 3 cut(s) 630, 1590, 2382
Psp1406I AACGTT 1 cut(s) 1947
Psp5II RGGWCCY 3 cut(s) 317, 1451, 1855
Psp6I CCWGG 3 cut(s) 244, 754, 1860
PspEI GGTNACC 1 cut(s) 1118
PspFI CCCAGC 1 cut(s) 455
PspGI CCWGG 3 cut(s) 244, 754, 1860
PspPI GGNCC 7 cut(s) 317, 530, 826, 884, 1451, 1855, 2674
PspPPI RGGWCCY 3 cut(s) 317, 1451, 1855
PstI CTGCAG 3 cut(s) 204, 852, 967
PstNI CAGNNNCTG 2 cut(s) 1745, 2375
PsuI RGATCY 2 cut(s) 787, 1498
PvuII CAGCTG 2 cut(s) 1224, 1745
RsaI GTAC 1 cut(s) 891
RsaNI GTAC 1 cut(s) 890
RseI CAYNNNNRTG 2 cut(s) 82, 1403
SacI GAGCTC 3 cut(s) 630, 1590, 2382
SapI GCTCTTC 1 cut(s) 2205
SaqAI TTAA 6 cut(s) 281, 1215, 1281, 1379, 1809, 1874
Sau96I GGNCC 7 cut(s) 317, 530, 826, 884, 1451, 1855, 2674
SchI GAGTC 3 cut(s) 102, 203, 562
ScrFI CCNGG 6 cut(s) 145, 246, 601, 756, 1862, 2491
SduI GDGCHC 5 cut(s) 630, 1590, 2294, 2382, 2411
SfaNI GCATC 2 cut(s) 2185, 2655
SfcI CTRYAG 4 cut(s) 200, 848, 963, 2500
SinI GGWCC 7 cut(s) 317, 530, 826, 884, 1451, 1855, 2674
SmiMI CAYNNNNRTG 2 cut(s) 82, 1403
SmlI CTYRAG 7 cut(s) 379, 503, 1133, 1141, 2342, 2351, 2581
SmoI CTYRAG 7 cut(s) 379, 503, 1133, 1141, 2342, 2351, 2581
SsiI CCGC 5 cut(s) 176, 242, 675, 1311, 2672
SspMI CTAG 4 cut(s) 272, 1545, 1914, 1962
SstI GAGCTC 3 cut(s) 630, 1590, 2382
StyD4I CCNGG 6 cut(s) 143, 244, 599, 754, 1860, 2489
StyI CCWWGG 3 cut(s) 50, 486, 1338
TaaI ACNGT 6 cut(s) 227, 856, 1092, 1566, 2150, 2630
TaiI ACGT 3 cut(s) 60, 524, 1950
TaqI TCGA 6 cut(s) 6, 815, 866, 1154, 1905, 2394
TauI GCSGC 1 cut(s) 178
Tru1I TTAA 6 cut(s) 281, 1215, 1281, 1379, 1809, 1874
Tru9I TTAA 6 cut(s) 281, 1215, 1281, 1379, 1809, 1874
TscAI CASTG 1 cut(s) 2155
TseFI GTSAC 5 cut(s) 1385, 1569, 2033, 2144, 2479
Tsp45I GTSAC 5 cut(s) 1385, 1569, 2033, 2144, 2479
TspGWI ACGGA 2 cut(s) 782, 1469
TspRI CASTG 1 cut(s) 2155
VneI GTGCAC 1 cut(s) 2290
VpaK11BI GGWCC 7 cut(s) 317, 530, 826, 884, 1451, 1855, 2674
XapI RAATTY 8 cut(s) 562, 727, 1072, 1228, 1491, 1514, 1599, 2168
XceI RCATGY 2 cut(s) 464, 1270
XmnI GAANNNNTTC 2 cut(s) 937, 2419
XspI CTAG 4 cut(s) 272, 1545, 1914, 1962
ZraI GACGTC 1 cut(s) 58
Zsp2I ATGCAT 1 cut(s) 2467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.