Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8127610.1

Orthogroup ID

OG0008490

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 518

Gene Structure 517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8127610.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 517 bp

atggaggcagtttctgaccccgcaaacattgagctcaagactaagttttcaacttactacaaggccacaatgccgtctggatcaagctactttgtcaagaaactcaactggagtgacaagatattccaattggggagccatgacagattcgagaacgatttacagatatttggaaaactgagcaattccaatgtcatgactcctttggcctattttacgactgttgacagtgcttatctgttctatgagtttgctccaaaaggcaccctctttgatgcccttcattgtagctcagacaatgccatggattgggcaagtagatacagttctgcggttggagtagctcagggtcttgcttttcttcatggatgcacttcaggtccaatactcctcctagacctgtcaagccgaagcattttgctcaagtccctcaaagagcctcttattggagacgccgagctctgcaaagtgatcgatccctcaaagagcactggaagcctttccactgttgctggtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

172

Amino Acids

18.73

Weight (kDa)

5.87

Isoelectric Point (pI)

31.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34420
fragaria_vesca	FvH4_2g12120 FvH4_5g16590 FvH4_5g16600
malus_domestica	MD05G1041000.v1.1 MD10G1047000.v1.1 MD10G1047300.v1.1
prunus_persica	Prupe.8G051700_v2.0.a1 Prupe.8G056100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0272061 RchiOBHm_Chr6g0272071 RchiOBHm_Chr6g0272091
rosa_laevigata	RLG00000013703
rosa_multiflora	Rmu_co8127610.1_g000001 Rmu_sc0005786.1_g000007 Rmu_sc0013301.1_g000003
rosa_roxburghii	Rroxscaffold_7G00196610
rosa_rugosa	Rorug06G0065500
rosa_samantha	Rh6AG182800 Rh6BG184300 Rh6CG183900 Rh6DG175500
rosa_wichuraiana	Rw6G015730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	263
AccB7I	CCANNNNNTGG	1 cut(s)	309
AciI	CCGC	2 cut(s)	21, 332
AclWI	GGATC	2 cut(s)	88, 470
AcuI	CTGAAG	1 cut(s)	360
AcyI	GRCGYC	1 cut(s)	453
AfiI	CCNNNNNNNGG	2 cut(s)	309, 446
AgsI	TTSAA	1 cut(s)	51
AluBI	AGCT	5 cut(s)	34, 87, 291, 344, 460
AluI	AGCT	5 cut(s)	34, 87, 291, 344, 460
Alw21I	GWGCWC	3 cut(s)	36, 462, 491
Alw26I	GTCTC	1 cut(s)	444
AlwI	GGATC	2 cut(s)	88, 470
AlwNI	CAGNNNCTG	1 cut(s)	14
AoxI	GGCC	2 cut(s)	63, 207
Asp700I	GAANNNNTTC	1 cut(s)	499
AspS9I	GGNCC	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	263
BanII	GRGCYC	2 cut(s)	36, 462
Bbv12I	GWGCWC	3 cut(s)	36, 462, 491
BceAI	ACGGC	1 cut(s)	58
BcgI	CGANNNNNNTGC	2 cut(s)	454, 488
BcoDI	GTCTC	1 cut(s)	444
BfaI	CTAG	1 cut(s)	395
Bme18I	GGWCC	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	2 cut(s)	137, 265
BmsI	GCATC	2 cut(s)	265, 359
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	2 cut(s)	20, 407
Bsa29I	ATCGAT	1 cut(s)	474
BsaHI	GRCGYC	1 cut(s)	453
BsaJI	CCNNGG	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	2 cut(s)	309, 446
Bse1I	ACTGG	2 cut(s)	113, 496
BseCI	ATCGAT	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	303
BseGI	GGATG	1 cut(s)	374
BseLI	CCNNNNNNNGG	2 cut(s)	309, 446
BseMII	CTCAG	3 cut(s)	170, 306, 359
BseNI	ACTGG	2 cut(s)	113, 496
BseRI	GAGGAG	1 cut(s)	380
BshFI	GGCC	2 cut(s)	65, 209
BshNI	GGYRCC	1 cut(s)	263
BshVI	ATCGAT	1 cut(s)	474
BsiHKAI	GWGCWC	3 cut(s)	36, 462, 491
BslFI	GGGAC	1 cut(s)	412
BslI	CCNNNNNNNGG	2 cut(s)	309, 446
BsmAI	GTCTC	1 cut(s)	444
BsmBI	CGTCTC	1 cut(s)	444
BsmFI	GGGAC	1 cut(s)	412
BsnI	GGCC	2 cut(s)	65, 209
Bsp1286I	GDGCHC	3 cut(s)	36, 462, 491
Bsp143I	GATC	3 cut(s)	80, 471, 475
Bsp19I	CCATGG	1 cut(s)	303
BspACI	CCGC	2 cut(s)	21, 332
BspANI	GGCC	2 cut(s)	65, 209
BspCNI	CTCAG	3 cut(s)	171, 305, 358
BspDI	ATCGAT	1 cut(s)	474
BspHI	TCATGA	1 cut(s)	195
BspLI	GGNNCC	2 cut(s)	137, 265
BspPI	GGATC	2 cut(s)	88, 470
BspT107I	GGYRCC	1 cut(s)	263
BsrI	ACTGG	2 cut(s)	113, 496
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	3 cut(s)	80, 471, 475
BssNI	GRCGYC	1 cut(s)	453
BssT1I	CCWWGG	1 cut(s)	303
Bst4CI	ACNGT	4 cut(s)	223, 230, 326, 508
BstACI	GRCGYC	1 cut(s)	453
BstDEI	CTNAG	4 cut(s)	42, 179, 292, 345
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	1 cut(s)	374
BstKTI	GATC	3 cut(s)	83, 474, 478
BstMAI	GTCTC	1 cut(s)	444
BstMBI	GATC	3 cut(s)	80, 471, 475
BstMWI	GCNNNNNNNGC	1 cut(s)	495
Bsu15I	ATCGAT	1 cut(s)	474
BsuRI	GGCC	2 cut(s)	65, 209
BsuTUI	ATCGAT	1 cut(s)	474
BtgI	CCRYGG	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	374
BtsIMutI	CAGTG	3 cut(s)	235, 489, 504
CaiI	CAGNNNCTG	1 cut(s)	14
CciI	TCATGA	1 cut(s)	195
Cfr13I	GGNCC	1 cut(s)	380
ClaI	ATCGAT	1 cut(s)	474
CseI	GACGC	1 cut(s)	461
CviAII	CATG	4 cut(s)	140, 196, 304, 365
DdeI	CTNAG	4 cut(s)	42, 179, 292, 345
DpnI	GATC	3 cut(s)	82, 473, 477
DpnII	GATC	3 cut(s)	80, 471, 475
Ecl136II	GAGCTC	2 cut(s)	34, 460
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	2 cut(s)	36, 462
Eco47I	GGWCC	1 cut(s)	380
Eco53kI	GAGCTC	2 cut(s)	34, 460
Eco57I	CTGAAG	1 cut(s)	360
EcoICRI	GAGCTC	2 cut(s)	34, 460
EcoT14I	CCWWGG	1 cut(s)	303
EcoT38I	GRGCYC	2 cut(s)	36, 462
ErhI	CCWWGG	1 cut(s)	303
Esp3I	CGTCTC	1 cut(s)	444
FaeI	CATG	4 cut(s)	143, 199, 307, 368
FaiI	YATR	5 cut(s)	141, 197, 246, 305, 366
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FaqI	GGGAC	1 cut(s)	412
FatI	CATG	4 cut(s)	139, 195, 303, 364
FauI	CCCGC	1 cut(s)	28
FokI	GGATG	1 cut(s)	381
FriOI	GRGCYC	2 cut(s)	36, 462
FspBI	CTAG	1 cut(s)	395
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	65, 209
HgaI	GACGC	1 cut(s)	461
Hin1I	GRCGYC	1 cut(s)	453
Hin1II	CATG	4 cut(s)	143, 199, 307, 368
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	2 cut(s)	147, 199
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	16, 295
Hpy188III	TCNNGA	5 cut(s)	37, 78, 97, 151, 196
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	290
HpyCH4III	ACNGT	4 cut(s)	223, 230, 326, 508
HpyCH4V	TGCA	2 cut(s)	372, 465
HpyF10VI	GCNNNNNNNGC	1 cut(s)	495
HpyF3I	CTNAG	4 cut(s)	42, 179, 292, 345
Hsp92I	GRCGYC	1 cut(s)	453
Hsp92II	CATG	4 cut(s)	143, 199, 307, 368
Kzo9I	GATC	3 cut(s)	80, 471, 475
LmnI	GCTCC	2 cut(s)	135, 259
LpnPI	CCDG	7 cut(s)	63, 94, 332, 363, 413, 477, 498
LweI	GCATC	2 cut(s)	265, 359
MaeI	CTAG	1 cut(s)	395
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	3 cut(s)	82, 473, 477
MboI	GATC	3 cut(s)	80, 471, 475
MboII	GAAGA	1 cut(s)	353
MfeI	CAATTG	1 cut(s)	128
MhlI	GDGCHC	3 cut(s)	36, 462, 491
MluCI	AATT	2 cut(s)	128, 184
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	5 cut(s)	278, 401, 440, 450, 490
MroXI	GAANNNNTTC	1 cut(s)	499
MunI	CAATTG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	495
NcoI	CCATGG	1 cut(s)	303
NdeII	GATC	3 cut(s)	80, 471, 475
NlaIII	CATG	4 cut(s)	143, 199, 307, 368
NlaIV	GGNNCC	2 cut(s)	137, 265
NmeAIII	GCCGAG	1 cut(s)	481
NmuCI	GTSAC	1 cut(s)	113
PagI	TCATGA	1 cut(s)	195
PdmI	GAANNNNTTC	1 cut(s)	499
PfeI	GAWTC	1 cut(s)	147
PflMI	CCANNNNNTGG	1 cut(s)	309
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
Psp124BI	GAGCTC	2 cut(s)	36, 462
PspN4I	GGNNCC	2 cut(s)	137, 265
PspPI	GGNCC	1 cut(s)	380
PsrI	GAACNNNNNNTAC	2 cut(s)	310, 342
PstNI	CAGNNNCTG	1 cut(s)	14
SacI	GAGCTC	2 cut(s)	36, 462
Sau3AI	GATC	3 cut(s)	80, 471, 475
Sau96I	GGNCC	1 cut(s)	380
SchI	GAGTC	1 cut(s)	193
SduI	GDGCHC	3 cut(s)	36, 462, 491
SetI	ASST	7 cut(s)	36, 89, 293, 346, 382, 402, 462
SfaNI	GCATC	2 cut(s)	265, 359
SinI	GGWCC	1 cut(s)	380
SmlI	CTYRAG	2 cut(s)	35, 422
SmoI	CTYRAG	2 cut(s)	35, 422
Sse9I	AATT	2 cut(s)	128, 184
SsiI	CCGC	2 cut(s)	21, 332
SspMI	CTAG	1 cut(s)	395
SstI	GAGCTC	2 cut(s)	36, 462
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	4 cut(s)	223, 230, 326, 508
TaqI	TCGA	2 cut(s)	150, 474
TasI	AATT	2 cut(s)	128, 184
TfiI	GAWTC	1 cut(s)	147
TscAI	CASTG	3 cut(s)	235, 496, 511
TseFI	GTSAC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	2 cut(s)	272, 353
TspRI	CASTG	3 cut(s)	235, 496, 511
Van91I	CCANNNNNTGG	1 cut(s)	309
VpaK11BI	GGWCC	1 cut(s)	380
XmnI	GAANNNNTTC	1 cut(s)	499
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.