Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008490

Physical Location & Seq

Genomic Coordinates Forward (+)

32129479 .. 32129880

Gene Structure 402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24406

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGCCGTCTGGATCAAGCTACTTTGTCAAGAAACTTAACTGGAGTGACAAGATATTCCAATTGGGAAGCCATGACAGAATCGAGAACGATTTACAGATCTTTGGAAAACTGAGCAATTCCAATATCATGACTCATTTGGCCTATTTTACAACGGTTGACAGTGCTTATCTGTTCTATGAGTTTGCTTTAAAAGGCACCCTCTTTGATACCCTTCATTGCAGCTCAGACAATGCCATGGATTGGGCAAGTAGATACAGTTCTGCAGTTGGAGTAGCTCAGGGTCTTGCTTTTCTTCATGGGTACACCTCAGGTCCAATTCTCCTCCTAGACCTGTCAAACCGAAGCATTTTGCTCAAGTCCCTCAAAAGAGTCTTATTGGAGACCCCGAGCTCTGCGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

133

Amino Acids

14.81

Weight (kDa)

7.87

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	7 - 119	8.7e-07	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	24 - 123	2.3e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34420
fragaria_vesca	FvH4_2g12120 FvH4_5g16590 FvH4_5g16600
malus_domestica	MD05G1041000.v1.1 MD10G1047000.v1.1 MD10G1047300.v1.1
prunus_persica	Prupe.8G051700_v2.0.a1 Prupe.8G056100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0272061 RchiOBHm_Chr6g0272071 RchiOBHm_Chr6g0272091
rosa_laevigata	RLG00000013703
rosa_multiflora	Rmu_co8127610.1_g000001 Rmu_sc0005786.1_g000007 Rmu_sc0013301.1_g000003
rosa_roxburghii	Rroxscaffold_7G00196610
rosa_rugosa	Rorug06G0065500
rosa_samantha	Rh6AG182800 Rh6BG184300 Rh6CG183900 Rh6DG175500
rosa_wichuraiana	Rw6G015730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AccB7I	CCANNNNNTGG	1 cut(s)	240
AclWI	GGATC	1 cut(s)	19
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	1 cut(s)	240
AluBI	AGCT	4 cut(s)	18, 222, 275, 390
AluI	AGCT	4 cut(s)	18, 222, 275, 390
Alw21I	GWGCWC	1 cut(s)	392
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	1 cut(s)	19
Ama87I	CYCGRG	1 cut(s)	385
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	311
AvaI	CYCGRG	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	311
AxyI	CCTNAGG	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	374
BfaI	CTAG	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	261
BglII	AGATCT	1 cut(s)	96
BisI	GCNGC	1 cut(s)	220
BlsI	GCNGC	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	311
BmeT110I	CYCGRG	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	196
BpmI	CTGGAG	1 cut(s)	61
Bpu10I	CCTNAGC	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	338
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse1I	ACTGG	1 cut(s)	44
Bse21I	CCTNAGG	1 cut(s)	307
Bse3DI	GCAATG	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	4 cut(s)	101, 237, 290, 321
BseNI	ACTGG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	231
BshFI	GGCC	1 cut(s)	140
BshNI	GGYRCC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	392
BsiHKCI	CYCGRG	1 cut(s)	385
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	1 cut(s)	374
BsmFI	GGGAC	1 cut(s)	343
BsnI	GGCC	1 cut(s)	140
Bso31I	GGTCTC	1 cut(s)	374
BsoBI	CYCGRG	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp143I	GATC	2 cut(s)	11, 96
Bsp19I	CCATGG	1 cut(s)	234
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	4 cut(s)	102, 236, 289, 320
BspHI	TCATGA	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	196
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	1 cut(s)	19
BspT107I	GGYRCC	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	2 cut(s)	11, 96
BssT1I	CCWWGG	1 cut(s)	234
Bst4CI	ACNGT	3 cut(s)	154, 161, 257
BstDEI	CTNAG	4 cut(s)	110, 223, 276, 307
BstDSI	CCRYGG	1 cut(s)	234
BstKTI	GATC	2 cut(s)	14, 99
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	2 cut(s)	11, 96
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	96
Bsu36I	CCTNAGG	1 cut(s)	307
BsuRI	GGCC	1 cut(s)	140
BtgI	CCRYGG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	166
CciI	TCATGA	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	4 cut(s)	71, 127, 235, 296
CviJI	RGCY	6 cut(s)	18, 69, 140, 222, 275, 390
CviKI_1	RGCY	6 cut(s)	18, 69, 140, 222, 275, 390
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	4 cut(s)	110, 223, 276, 307
DpnI	GATC	2 cut(s)	13, 98
DpnII	GATC	2 cut(s)	11, 96
DraI	TTTAAA	1 cut(s)	189
Ecl136II	GAGCTC	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	392
Eco31I	GGTCTC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	311
Eco53kI	GAGCTC	1 cut(s)	390
Eco81I	CCTNAGG	1 cut(s)	307
Eco88I	CYCGRG	1 cut(s)	385
EcoICRI	GAGCTC	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	4 cut(s)	74, 130, 238, 299
FaiI	YATR	5 cut(s)	72, 128, 177, 236, 297
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	4 cut(s)	70, 126, 234, 295
Fnu4HI	GCNGC	1 cut(s)	220
FriOI	GRGCYC	1 cut(s)	392
Fsp4HI	GCNGC	1 cut(s)	220
FspBI	CTAG	1 cut(s)	326
GluI	GCNGC	1 cut(s)	220
GsuI	CTGGAG	1 cut(s)	61
HaeIII	GGCC	1 cut(s)	140
Hin1II	CATG	4 cut(s)	74, 130, 238, 299
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	3 cut(s)	78, 130, 369
Hpy166II	GTNNAC	2 cut(s)	157, 303
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	4 cut(s)	9, 28, 82, 127
Hpy8I	GTNNAC	2 cut(s)	157, 303
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	3 cut(s)	154, 161, 257
HpyCH4V	TGCA	2 cut(s)	219, 263
HpyF3I	CTNAG	4 cut(s)	110, 223, 276, 307
Hsp92II	CATG	4 cut(s)	74, 130, 238, 299
Kzo9I	GATC	2 cut(s)	11, 96
LpnPI	CCDG	4 cut(s)	25, 263, 294, 344
Lsp1109I	GCAGC	1 cut(s)	231
MaeI	CTAG	1 cut(s)	326
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	2 cut(s)	13, 98
MboI	GATC	2 cut(s)	11, 96
MboII	GAAGA	1 cut(s)	284
MfeI	CAATTG	1 cut(s)	59
MflI	RGATCY	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	392
MluCI	AATT	3 cut(s)	59, 115, 315
MlyI	GAGTC	2 cut(s)	124, 378
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	4 cut(s)	209, 316, 332, 371
MseI	TTAA	2 cut(s)	36, 188
MunI	CAATTG	1 cut(s)	59
NcoI	CCATGG	1 cut(s)	234
NdeII	GATC	2 cut(s)	11, 96
NlaIII	CATG	4 cut(s)	74, 130, 238, 299
NlaIV	GGNNCC	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	44
PagI	TCATGA	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	78
PflMI	CCANNNNNTGG	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	221
PleI	GAGTC	2 cut(s)	124, 377
PpsI	GAGTC	2 cut(s)	124, 377
Psp124BI	GAGCTC	1 cut(s)	392
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	311
PsrI	GAACNNNNNNTAC	2 cut(s)	241, 273
PstI	CTGCAG	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	96
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
SacI	GAGCTC	1 cut(s)	392
SaqAI	TTAA	2 cut(s)	36, 188
SatI	GCNGC	1 cut(s)	220
Sau3AI	GATC	2 cut(s)	11, 96
Sau96I	GGNCC	1 cut(s)	311
SchI	GAGTC	2 cut(s)	124, 378
SduI	GDGCHC	1 cut(s)	392
SetI	ASST	7 cut(s)	20, 224, 277, 308, 313, 333, 392
SfcI	CTRYAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	3 cut(s)	59, 115, 315
SspMI	CTAG	1 cut(s)	326
SstI	GAGCTC	1 cut(s)	392
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	3 cut(s)	154, 161, 257
TaqI	TCGA	1 cut(s)	81
TasI	AATT	3 cut(s)	59, 115, 315
TfiI	GAWTC	1 cut(s)	78
Tru1I	TTAA	2 cut(s)	36, 188
Tru9I	TTAA	2 cut(s)	36, 188
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	1 cut(s)	219
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	203, 284
TspRI	CASTG	1 cut(s)	166
Van91I	CCANNNNNTGG	1 cut(s)	240
VpaK11BI	GGWCC	1 cut(s)	311
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.