FvH4_5g18011
ERF Family

RING FYVE PHD zinc finger superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017306
Physical Location & Seq
Reverse (-)
10349897 .. 10352515
2619 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18011.t1

Sequence Viewer

Length: 564 bp
ATGTTACTTCAGAGCTGTGTACCGAGTTCAGTTGAAGTAGGCAACCAAGATGTTTGCGTTTCCGTACTTAGAAGCTATAAGCTCCAAAAGATTTCCCTCCATAAAAGTTGTGGTGTTGATGATGATTCTATTCAGTCGTGTAAGCTGTGTGGTCAATCTGAAAGTGTATTGAATCTGTTACTCTGCGATCGTTGTGAGGAAGCATTCCATGTTTCTTGCTGCAAACCCAGAGTGGTTTTGCCAATTGACGAGTGGTTTTGTCATTCTTGTGCTAAAATGTCAGAGCTTAGTTCGTTCACGATATCATTATCACGTAGTATTGGTCAGGGGATCGGTCCGTGTCAATATGAGTTAGGTTCAGTATTGAGTCCTATAGCGGCTATGATGAAGTACCCGGAGCCATTTAAATCTAAGGTTCGAATCGGTGAAGCATATCAAGCCCAAGTTCCTGACTGGGCTCCGCTGAATGAAGCCAAAATGGATAACGGGGATTGTTCTGATGCCGATACTCAGATGAAATCACATACTGCTTCTAGAAAGAGAAAGCAAGATTTTTCATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2 PHD

Protein Analysis

188

Amino Acids

20.61

Weight (kDa)

6.08

Isoelectric Point (pI)

56.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 47 - 90 1.2e-07 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017306)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18011
malus_domestica MD06G1235600.v1.1
prunus_persica Prupe.5G240400_v2.0.a1
pyrus_communis pycom06g21070
rosa_chinensis RchiOBHm_Chr7g0177591
rosa_laevigata RLG00000005523
rosa_multiflora Rmu_sc0010592.1_g000002
rosa_roxburghii Rroxscaffold_3G00275730
rosa_samantha Rh7AG006900 Rh7BG006900 Rh7CG007400 Rh7DG006900
rosa_wichuraiana Rw7G000590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 377, 461
AclWI GGATC 1 cut(s) 338
AfaI GTAC 3 cut(s) 21, 66, 392
AgsI TTSAA 2 cut(s) 35, 172
AluBI AGCT 5 cut(s) 15, 75, 82, 145, 286
AluI AGCT 5 cut(s) 15, 75, 82, 145, 286
AlwI GGATC 1 cut(s) 338
ApeKI GCWGC 1 cut(s) 219
AspS9I GGNCC 1 cut(s) 335
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 1 cut(s) 437
AsuII TTCGAA 1 cut(s) 418
AvaII GGWCC 1 cut(s) 335
BanII GRGCYC 1 cut(s) 460
BbvI GCAGC 1 cut(s) 206
BcnI CCSGG 1 cut(s) 395
BfaI CTAG 1 cut(s) 534
BfmI CTRYAG 1 cut(s) 372
BisI GCNGC 2 cut(s) 220, 378
BlsI GCNGC 2 cut(s) 221, 379
Bme1390I CCNGG 1 cut(s) 395
Bme18I GGWCC 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 2 cut(s) 399, 459
BmrFI CCNGG 1 cut(s) 395
BmrI ACTGGG 1 cut(s) 463
BmsI GCATC 1 cut(s) 490
BmuI ACTGGG 1 cut(s) 463
Bpu14I TTCGAA 1 cut(s) 418
BpuMI CCSGG 1 cut(s) 395
BsaAI YACGTR 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 458
BseMII CTCAG 1 cut(s) 524
BseNI ACTGG 1 cut(s) 458
BseXI GCAGC 1 cut(s) 206
Bsh1285I CGRYCG 1 cut(s) 190
BsiEI CGRYCG 1 cut(s) 190
BsiSI CCGG 1 cut(s) 395
BsmI GAATGC 1 cut(s) 203
Bsp119I TTCGAA 1 cut(s) 418
Bsp1286I GDGCHC 1 cut(s) 460
Bsp143I GATC 2 cut(s) 187, 330
BspACI CCGC 2 cut(s) 377, 461
BspCNI CTCAG 1 cut(s) 523
BspLI GGNNCC 2 cut(s) 399, 459
BspPI GGATC 1 cut(s) 338
BspT104I TTCGAA 1 cut(s) 418
BsrI ACTGG 1 cut(s) 458
BssMI GATC 2 cut(s) 187, 330
BstBAI YACGTR 1 cut(s) 314
BstBI TTCGAA 1 cut(s) 418
BstDEI CTNAG 4 cut(s) 68, 287, 411, 510
BstKTI GATC 2 cut(s) 190, 333
BstMBI GATC 2 cut(s) 187, 330
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 437
BstSCI CCNGG 1 cut(s) 393
BstSFI CTRYAG 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 335
CpoI CGGWCCG 1 cut(s) 335
Csp6I GTAC 3 cut(s) 20, 65, 391
CspI CGGWCCG 1 cut(s) 335
CviAII CATG 1 cut(s) 209
CviQI GTAC 3 cut(s) 20, 65, 391
DdeI CTNAG 4 cut(s) 68, 287, 411, 510
DpnI GATC 2 cut(s) 189, 332
DpnII GATC 2 cut(s) 187, 330
DraI TTTAAA 1 cut(s) 406
Eco24I GRGCYC 1 cut(s) 460
Eco32I GATATC 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 335
EcoRV GATATC 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 460
FaeI CATG 1 cut(s) 212
FaiI YATR 9 cut(s) 78, 102, 210, 348, 374, 383, 433, 525, 562
FatI CATG 1 cut(s) 208
Fnu4HI GCNGC 2 cut(s) 220, 378
FriOI GRGCYC 1 cut(s) 460
Fsp4HI GCNGC 2 cut(s) 220, 378
FspBI CTAG 1 cut(s) 534
GluI GCNGC 2 cut(s) 220, 378
HapII CCGG 1 cut(s) 395
Hin1II CATG 1 cut(s) 212
HinfI GANTC 4 cut(s) 125, 172, 367, 420
HpaII CCGG 1 cut(s) 395
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 2 cut(s) 20, 297
Hpy188I TCNGA 5 cut(s) 12, 160, 283, 499, 513
Hpy188III TCNNGA 3 cut(s) 298, 449, 534
Hpy8I GTNNAC 2 cut(s) 20, 297
HpyCH4IV ACGT 1 cut(s) 313
HpyCH4V TGCA 1 cut(s) 222
HpyF10VI GCNNNNNNNGC 1 cut(s) 437
HpyF3I CTNAG 4 cut(s) 68, 287, 411, 510
HpySE526I ACGT 1 cut(s) 313
Hsp92II CATG 1 cut(s) 212
Kzo9I GATC 2 cut(s) 187, 330
LmnI GCTCC 3 cut(s) 87, 397, 463
LpnPI CCDG 5 cut(s) 241, 311, 408, 439, 462
Lsp1109I GCAGC 1 cut(s) 206
LweI GCATC 1 cut(s) 490
MaeI CTAG 1 cut(s) 534
MaeII ACGT 1 cut(s) 313
MaeIII GTNAC 2 cut(s) 3, 177
MalI GATC 2 cut(s) 189, 332
MboI GATC 2 cut(s) 187, 330
MfeI CAATTG 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 460
MluCI AATT 1 cut(s) 243
MlyI GAGTC 1 cut(s) 376
MnlI CCTC 2 cut(s) 107, 190
MseI TTAA 1 cut(s) 405
MslI CAYNNNNRTG 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 463
MspI CCGG 1 cut(s) 395
MspR9I CCNGG 1 cut(s) 395
MunI CAATTG 1 cut(s) 243
Mva1269I GAATGC 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 437
NciI CCSGG 1 cut(s) 395
NdeII GATC 2 cut(s) 187, 330
NlaIII CATG 1 cut(s) 212
NlaIV GGNNCC 2 cut(s) 399, 459
NspV TTCGAA 1 cut(s) 418
PctI GAATGC 1 cut(s) 203
PfeI GAWTC 3 cut(s) 125, 172, 420
PkrI GCNGC 2 cut(s) 221, 379
Ple19I CGATCG 1 cut(s) 190
PleI GAGTC 1 cut(s) 375
PpsI GAGTC 1 cut(s) 375
Ppu21I YACGTR 1 cut(s) 314
PspN4I GGNNCC 2 cut(s) 399, 459
PspPI GGNCC 1 cut(s) 335
PvuI CGATCG 1 cut(s) 190
RsaI GTAC 3 cut(s) 21, 66, 392
RsaNI GTAC 3 cut(s) 20, 65, 391
RseI CAYNNNNRTG 1 cut(s) 267
Rsr2I CGGWCCG 1 cut(s) 335
RsrII CGGWCCG 1 cut(s) 335
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 2 cut(s) 220, 378
Sau3AI GATC 2 cut(s) 187, 330
Sau96I GGNCC 1 cut(s) 335
SchI GAGTC 1 cut(s) 376
ScrFI CCNGG 1 cut(s) 395
SduI GDGCHC 1 cut(s) 460
SetI ASST 8 cut(s) 17, 77, 84, 147, 288, 316, 358, 417
SfaNI GCATC 1 cut(s) 490
SfcI CTRYAG 1 cut(s) 372
SfuI TTCGAA 1 cut(s) 418
SinI GGWCC 1 cut(s) 335
SmiI ATTTAAAT 1 cut(s) 406
SmiMI CAYNNNNRTG 1 cut(s) 267
Sse9I AATT 1 cut(s) 243
SsiI CCGC 2 cut(s) 377, 461
SspMI CTAG 1 cut(s) 534
StyD4I CCNGG 1 cut(s) 393
SwaI ATTTAAAT 1 cut(s) 406
TaiI ACGT 1 cut(s) 316
TaqI TCGA 1 cut(s) 418
TaqII GACCGA 1 cut(s) 323
TasI AATT 1 cut(s) 243
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 3 cut(s) 125, 172, 420
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TseI GCWGC 1 cut(s) 219
TspDTI ATGAA 4 cut(s) 401, 483, 530, 546
TspGWI ACGGA 2 cut(s) 52, 327
VpaK11BI GGWCC 1 cut(s) 335
XbaI TCTAGA 1 cut(s) 533
XcmI CCANNNNNNNNNTGG 2 cut(s) 107, 249
XspI CTAG 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.