Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0017306

Physical Location & Seq

Genomic Coordinates Reverse (-)

18119508 .. 18120212

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G240400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGGTAAAAACCACCTTTGCATTTCTGTACTTCAAAGTTATGGGATCAAAATTGTTTCCCTTCACAAACCTTGTTCAGCTCAAGTTTTGGGAACTGATAGTCTTGGTGGAGATATCCAGTCGTGTAAGCTGTGTGGTCATTCAGAAAATATAGCAAATATGCTACTTTGCGATCGTTGCGAAGAGGCTTTTCATGTATCTTGCTGCAAACCCAGGGTGGTTTTGCCAATTGATGAGTGGTTTTGTCCTTCTTGTTTGAAAATGTCACAGAATAATTCTTTCATTAAATCACCTAGCATCGGTTCGGGGATTGGCTCGTGTAAATTTGAATTGGGTCCAATTGCAGTCATGCTAAAGTACCCAGAGCCATATACGTCTAAGGTTCGGCTCGGTGAAGCATTTCAAGCTCAAGTTCCTGAATGGTGTGATCAAATTAATGCGGCTCCATTGTCTGATGTCCAAACTGAAGACCCGGATTGTTCTTCTCATTCCGCTTGTGCTGATCCTCCGGTAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELM2 PHD

Protein Analysis

173

Amino Acids

18.61

Weight (kDa)

5.45

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017306)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g18011
malus_domestica	MD06G1235600.v1.1
prunus_persica	Prupe.5G240400_v2.0.a1
pyrus_communis	pycom06g21070
rosa_chinensis	RchiOBHm_Chr7g0177591
rosa_laevigata	RLG00000005523
rosa_multiflora	Rmu_sc0010592.1_g000002
rosa_roxburghii	Rroxscaffold_3G00275730
rosa_samantha	Rh7AG006900 Rh7BG006900 Rh7CG007400 Rh7DG006900
rosa_wichuraiana	Rw7G000590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	440, 492
AclWI	GGATC	2 cut(s)	53, 497
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	2 cut(s)	30, 359
AfiI	CCNNNNNNNGG	1 cut(s)	299
AgsI	TTSAA	4 cut(s)	35, 259, 329, 404
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	3 cut(s)	80, 130, 407
AluI	AGCT	3 cut(s)	80, 130, 407
AlwI	GGATC	2 cut(s)	53, 497
ApeKI	GCWGC	1 cut(s)	204
ApoI	RAATTY	1 cut(s)	323
AseI	ATTAAT	1 cut(s)	435
Asp700I	GAANNNNTTC	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	335
AsuC2I	CCSGG	1 cut(s)	473
AsuHPI	GGTGA	2 cut(s)	282, 404
AvaII	GGWCC	1 cut(s)	335
BauI	CACGAG	1 cut(s)	316
BbsI	GAAGAC	1 cut(s)	474
BbvI	GCAGC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	214
BclI	TGATCA	1 cut(s)	427
BcnI	CCSGG	1 cut(s)	473
BfaI	CTAG	1 cut(s)	294
BisI	GCNGC	2 cut(s)	205, 441
BlsI	GCNGC	2 cut(s)	206, 442
Bme1390I	CCNGG	2 cut(s)	214, 473
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	2 cut(s)	336, 444
BmrFI	CCNGG	2 cut(s)	214, 473
BmsI	GCATC	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	474
BpuEI	CTTGAG	2 cut(s)	66, 393
BpuMI	CCSGG	1 cut(s)	473
BsaJI	CCNNGG	2 cut(s)	212, 213
BsaWI	WCCGGW	1 cut(s)	508
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse1I	ACTGG	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	2 cut(s)	212, 213
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseNI	ACTGG	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	191
Bsh1285I	CGRYCG	1 cut(s)	175
BsiEI	CGRYCG	1 cut(s)	175
BsiSI	CCGG	2 cut(s)	473, 509
BslI	CCNNNNNNNGG	1 cut(s)	299
Bsp143I	GATC	4 cut(s)	45, 172, 427, 502
BspACI	CCGC	2 cut(s)	440, 492
BspLI	GGNNCC	2 cut(s)	336, 444
BspPI	GGATC	2 cut(s)	53, 497
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	2 cut(s)	212, 213
BssMI	GATC	4 cut(s)	45, 172, 427, 502
BssSI	CACGAG	1 cut(s)	316
Bst2BI	CACGAG	1 cut(s)	316
Bst2UI	CCWGG	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	177
BstDEI	CTNAG	1 cut(s)	378
BstKTI	GATC	4 cut(s)	48, 175, 430, 505
BstMBI	GATC	4 cut(s)	45, 172, 427, 502
BstMCI	CGRYCG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 404
BstNI	CCWGG	1 cut(s)	214
BstSCI	CCNGG	2 cut(s)	212, 471
BstV1I	GCAGC	1 cut(s)	191
BstV2I	GAAGAC	1 cut(s)	474
Cfr13I	GGNCC	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	29, 358
CviAII	CATG	2 cut(s)	194, 349
CviJI	RGCY	8 cut(s)	80, 130, 188, 315, 367, 388, 407, 443
CviKI_1	RGCY	8 cut(s)	80, 130, 188, 315, 367, 388, 407, 443
CviQI	GTAC	2 cut(s)	29, 358
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	4 cut(s)	47, 174, 429, 504
DpnII	GATC	4 cut(s)	45, 172, 427, 502
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco32I	GATATC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	335
Eco57I	CTGAAG	1 cut(s)	486
EcoRII	CCWGG	1 cut(s)	212
EcoRV	GATATC	1 cut(s)	115
FaeI	CATG	2 cut(s)	197, 352
FaiI	YATR	8 cut(s)	42, 152, 161, 195, 350, 370, 372, 517
FatI	CATG	2 cut(s)	193, 348
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	2 cut(s)	205, 441
Fsp4HI	GCNGC	2 cut(s)	205, 441
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	2 cut(s)	205, 441
HapII	CCGG	2 cut(s)	473, 509
Hin1II	CATG	2 cut(s)	197, 352
HpaII	CCGG	2 cut(s)	473, 509
HphI	GGTGA	2 cut(s)	282, 404
Hpy188I	TCNGA	2 cut(s)	145, 454
Hpy188III	TCNNGA	1 cut(s)	416
HpyAV	CCTTC	2 cut(s)	71, 258
HpyCH4IV	ACGT	1 cut(s)	374
HpyCH4V	TGCA	3 cut(s)	21, 207, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 404
HpyF3I	CTNAG	1 cut(s)	378
HpySE526I	ACGT	1 cut(s)	374
Hsp92II	CATG	2 cut(s)	197, 352
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	4 cut(s)	45, 172, 427, 502
LmnI	GCTCC	1 cut(s)	448
LpnPI	CCDG	6 cut(s)	131, 199, 226, 375, 429, 486
Lsp1109I	GCAGC	1 cut(s)	191
LweI	GCATC	1 cut(s)	306
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	374
MaeIII	GTNAC	1 cut(s)	264
MalI	GATC	4 cut(s)	47, 174, 429, 504
MboI	GATC	4 cut(s)	45, 172, 427, 502
MboII	GAAGA	3 cut(s)	194, 474, 479
MfeI	CAATTG	2 cut(s)	228, 339
MluCI	AATT	7 cut(s)	51, 228, 274, 323, 329, 339, 432
MnlI	CCTC	2 cut(s)	178, 516
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	2 cut(s)	285, 435
MspI	CCGG	2 cut(s)	473, 509
MspR9I	CCNGG	2 cut(s)	214, 473
MunI	CAATTG	2 cut(s)	228, 339
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	2 cut(s)	177, 404
NciI	CCSGG	1 cut(s)	473
NdeII	GATC	4 cut(s)	45, 172, 427, 502
NlaIII	CATG	2 cut(s)	197, 352
NlaIV	GGNNCC	2 cut(s)	336, 444
NmuCI	GTSAC	1 cut(s)	264
PasI	CCCWGGG	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	399
PkrI	GCNGC	2 cut(s)	206, 442
Ple19I	CGATCG	1 cut(s)	175
PshBI	ATTAAT	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	2 cut(s)	336, 444
PspPI	GGNCC	1 cut(s)	335
PvuI	CGATCG	1 cut(s)	175
RsaI	GTAC	2 cut(s)	30, 359
RsaNI	GTAC	2 cut(s)	29, 358
SaqAI	TTAA	2 cut(s)	285, 435
SatI	GCNGC	2 cut(s)	205, 441
Sau3AI	GATC	4 cut(s)	45, 172, 427, 502
Sau96I	GGNCC	1 cut(s)	335
ScrFI	CCNGG	2 cut(s)	214, 473
SetI	ASST	8 cut(s)	18, 73, 82, 132, 295, 377, 384, 409
SfaNI	GCATC	1 cut(s)	306
SinI	GGWCC	1 cut(s)	335
SmlI	CTYRAG	2 cut(s)	81, 408
SmoI	CTYRAG	2 cut(s)	81, 408
Sse9I	AATT	7 cut(s)	51, 228, 274, 323, 329, 339, 432
SsiI	CCGC	2 cut(s)	440, 492
SspMI	CTAG	1 cut(s)	294
StyD4I	CCNGG	2 cut(s)	212, 471
TaiI	ACGT	1 cut(s)	377
TasI	AATT	7 cut(s)	51, 228, 274, 323, 329, 339, 432
TatI	WGTACW	1 cut(s)	28
TauI	GCSGC	1 cut(s)	443
Tru1I	TTAA	2 cut(s)	285, 435
Tru9I	TTAA	2 cut(s)	285, 435
TseFI	GTSAC	1 cut(s)	264
TseI	GCWGC	1 cut(s)	204
Tsp45I	GTSAC	1 cut(s)	264
TspDTI	ATGAA	2 cut(s)	182, 271
VpaK11BI	GGWCC	1 cut(s)	335
VspI	ATTAAT	1 cut(s)	435
XapI	RAATTY	1 cut(s)	323
XcmI	CCANNNNNNNNNTGG	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.