Rroxscaffold_3G00275730
ERF Family

RING FYVE PHD zinc finger superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0017306
Physical Location & Seq
Reverse (-)
67082093 .. 67083546
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00275730.1

Sequence Viewer

Length: 636 bp
ATGTTTCCCGGTTTCCCTACCAGATTTCAACTCCACCGAAAGACCCACACCCACACACGCCGACTCAGATCTGAAAACATGTTAGTTCAGAGCTGTACTCCGAGTTCAGTTGAAGTAAGGAAACAAGATGTTTGCATTTCCGTACTAAAAACTTATAAGCTCCAAAAGATTTCCCTTCATAAAAGTTGTGCTGCTGCTGCTGCTCAAGTTTCCGGAATTGATGACTCTATACAGTCGTGTAAGCTGTGTGGTAAATCCGAAAACGTATTGAATCTGTTACTTTGTGATCGTTGTGAGGAAGCGTTTCATGTGTCTTGCTGCAAACCCAGGGTGGTTTTGCCAATTGACGAGTGGTTTTGTCATTCCTGTGCAAAAATTAATCCCAAAATGTCGGAGATTAATTCCTTCTCCAAATCACGTACTATTGGTCAGGGGATTGGCCCATGTCAATTTGAATTCGGTCCAGTAGTGGGTCCAATAGCAGCCATGATCAAGTACCCGGACCCATTTATTTCTAAGGTTCGAATTGGCGAAGCATATCAAGCCCAAGTTCCTGACTGGGCTCCGCCCACTGCAGTCAAAACTGACAACGGGGGTTGTTCTGATTGTGCCGACTCTCAGGTGATAATCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2 PHD

Protein Analysis

211

Amino Acids

23.31

Weight (kDa)

8.64

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 80 - 123 5.1e-08 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017306)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18011
malus_domestica MD06G1235600.v1.1
prunus_persica Prupe.5G240400_v2.0.a1
pyrus_communis pycom06g21070
rosa_chinensis RchiOBHm_Chr7g0177591
rosa_laevigata RLG00000005523
rosa_multiflora Rmu_sc0010592.1_g000002
rosa_roxburghii Rroxscaffold_3G00275730
rosa_samantha Rh7AG006900 Rh7BG006900 Rh7CG007400 Rh7DG006900
rosa_wichuraiana Rw7G000590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
AccIII TCCGGA 1 cut(s) 212
AciI CCGC 1 cut(s) 566
AcsI RAATTY 1 cut(s) 455
AfaI GTAC 4 cut(s) 97, 144, 421, 497
AfiI CCNNNNNNNGG 1 cut(s) 470
AflIII ACRYGT 1 cut(s) 78
AgsI TTSAA 4 cut(s) 29, 113, 271, 455
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 3 cut(s) 93, 160, 244
AluI AGCT 3 cut(s) 93, 160, 244
Aor13HI TCCGGA 1 cut(s) 212
AoxI GGCC 1 cut(s) 439
ApeKI GCWGC 6 cut(s) 191, 194, 197, 200, 318, 482
ApoI RAATTY 1 cut(s) 455
AseI ATTAAT 2 cut(s) 378, 399
Asp700I GAANNNNTTC 1 cut(s) 303
AspS9I GGNCC 4 cut(s) 440, 461, 473, 502
AsuC2I CCSGG 2 cut(s) 9, 500
AsuHPI GGTGA 1 cut(s) 634
AsuII TTCGAA 1 cut(s) 523
AvaII GGWCC 3 cut(s) 461, 473, 502
BanII GRGCYC 1 cut(s) 565
BbvI GCAGC 6 cut(s) 178, 181, 184, 187, 305, 494
BciT130I CCWGG 1 cut(s) 328
BclI TGATCA 1 cut(s) 489
BcnI CCSGG 2 cut(s) 9, 500
BfmI CTRYAG 1 cut(s) 573
BglII AGATCT 1 cut(s) 68
BisI GCNGC 6 cut(s) 192, 195, 198, 201, 319, 483
BlsI GCNGC 6 cut(s) 193, 196, 199, 202, 320, 484
Bme1390I CCNGG 3 cut(s) 9, 328, 500
Bme18I GGWCC 3 cut(s) 461, 473, 502
BmgT120I GGNCC 4 cut(s) 440, 461, 473, 502
BmiI GGNNCC 3 cut(s) 474, 504, 564
BmrFI CCNGG 3 cut(s) 9, 328, 500
BmrI ACTGGG 1 cut(s) 568
BmuI ACTGGG 1 cut(s) 568
BplI GAGNNNNNCTC 2 cut(s) 82, 114
Bpu14I TTCGAA 1 cut(s) 523
BpuEI CTTGAG 1 cut(s) 189
BpuMI CCSGG 2 cut(s) 9, 500
BsaAI YACGTR 1 cut(s) 419
BsaJI CCNNGG 2 cut(s) 326, 327
BsaWI WCCGGW 1 cut(s) 212
Bsc4I CCNNNNNNNGG 1 cut(s) 470
Bse1I ACTGG 2 cut(s) 464, 563
BseAI TCCGGA 1 cut(s) 212
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 326, 327
BseLI CCNNNNNNNGG 1 cut(s) 470
BseMII CTCAG 2 cut(s) 79, 632
BseNI ACTGG 2 cut(s) 464, 563
BseXI GCAGC 6 cut(s) 178, 181, 184, 187, 305, 494
BshFI GGCC 1 cut(s) 441
BsiSI CCGG 3 cut(s) 9, 213, 500
BslI CCNNNNNNNGG 1 cut(s) 470
BsnI GGCC 1 cut(s) 441
Bsp119I TTCGAA 1 cut(s) 523
Bsp1286I GDGCHC 1 cut(s) 565
Bsp13I TCCGGA 1 cut(s) 212
Bsp143I GATC 3 cut(s) 68, 286, 489
BspACI CCGC 1 cut(s) 566
BspANI GGCC 1 cut(s) 441
BspCNI CTCAG 2 cut(s) 78, 631
BspEI TCCGGA 1 cut(s) 212
BspLI GGNNCC 3 cut(s) 474, 504, 564
BspMAI CTGCAG 1 cut(s) 577
BspT104I TTCGAA 1 cut(s) 523
BsrI ACTGG 2 cut(s) 464, 563
BssECI CCNNGG 2 cut(s) 326, 327
BssMI GATC 3 cut(s) 68, 286, 489
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 1 cut(s) 234
BstBAI YACGTR 1 cut(s) 419
BstBI TTCGAA 1 cut(s) 523
BstDEI CTNAG 3 cut(s) 65, 516, 618
BstKTI GATC 3 cut(s) 71, 289, 492
BstMBI GATC 3 cut(s) 68, 286, 489
BstMWI GCNNNNNNNGC 3 cut(s) 197, 200, 542
BstNI CCWGG 1 cut(s) 328
BstNSI RCATGY 1 cut(s) 82
BstSCI CCNGG 3 cut(s) 7, 326, 498
BstSFI CTRYAG 1 cut(s) 573
BstV1I GCAGC 6 cut(s) 178, 181, 184, 187, 305, 494
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BsuRI GGCC 1 cut(s) 441
BtsI GCAGTG 1 cut(s) 570
BtsIMutI CAGTG 1 cut(s) 570
Cfr13I GGNCC 4 cut(s) 440, 461, 473, 502
Csp6I GTAC 4 cut(s) 96, 143, 420, 496
CviAII CATG 4 cut(s) 79, 308, 444, 487
CviJI RGCY 7 cut(s) 93, 160, 244, 441, 485, 545, 563
CviKI_1 RGCY 7 cut(s) 93, 160, 244, 441, 485, 545, 563
CviQI GTAC 4 cut(s) 96, 143, 420, 496
DdeI CTNAG 3 cut(s) 65, 516, 618
DpnI GATC 3 cut(s) 70, 288, 491
DpnII GATC 3 cut(s) 68, 286, 489
EciI GGCGGA 1 cut(s) 555
Eco24I GRGCYC 1 cut(s) 565
Eco47I GGWCC 3 cut(s) 461, 473, 502
EcoRI GAATTC 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 326
EcoT38I GRGCYC 1 cut(s) 565
FaeI CATG 4 cut(s) 82, 311, 447, 490
FaiI YATR 8 cut(s) 80, 156, 180, 230, 309, 445, 488, 538
FatI CATG 4 cut(s) 78, 307, 443, 486
FbaI TGATCA 1 cut(s) 489
Fnu4HI GCNGC 6 cut(s) 192, 195, 198, 201, 319, 483
FriOI GRGCYC 1 cut(s) 565
Fsp4HI GCNGC 6 cut(s) 192, 195, 198, 201, 319, 483
GluI GCNGC 6 cut(s) 192, 195, 198, 201, 319, 483
HaeIII GGCC 1 cut(s) 441
HapII CCGG 3 cut(s) 9, 213, 500
Hin1II CATG 4 cut(s) 82, 311, 447, 490
HinfI GANTC 4 cut(s) 63, 224, 271, 614
HpaII CCGG 3 cut(s) 9, 213, 500
HphI GGTGA 1 cut(s) 634
Hpy188I TCNGA 7 cut(s) 68, 73, 90, 102, 259, 394, 604
Hpy188III TCNNGA 2 cut(s) 213, 554
HpyAV CCTTC 2 cut(s) 185, 415
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4IV ACGT 2 cut(s) 264, 418
HpyCH4V TGCA 4 cut(s) 135, 321, 371, 575
HpyF10VI GCNNNNNNNGC 3 cut(s) 197, 200, 542
HpyF3I CTNAG 3 cut(s) 65, 516, 618
HpySE526I ACGT 2 cut(s) 264, 418
Hsp92II CATG 4 cut(s) 82, 311, 447, 490
Kpn2I TCCGGA 1 cut(s) 212
Ksp22I TGATCA 1 cut(s) 489
Kzo9I GATC 3 cut(s) 68, 286, 489
LmnI GCTCC 2 cut(s) 165, 568
Lsp1109I GCAGC 6 cut(s) 178, 181, 184, 187, 305, 494
MaeII ACGT 2 cut(s) 264, 418
MaeIII GTNAC 1 cut(s) 276
MalI GATC 3 cut(s) 70, 288, 491
MboI GATC 3 cut(s) 68, 286, 489
MfeI CAATTG 1 cut(s) 342
MflI RGATCY 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 565
MluCI AATT 7 cut(s) 216, 342, 375, 400, 449, 455, 525
MlyI GAGTC 3 cut(s) 57, 218, 608
MmeI TCCRAC 1 cut(s) 372
MnlI CCTC 1 cut(s) 289
MroI TCCGGA 1 cut(s) 212
MroXI GAANNNNTTC 1 cut(s) 303
MseI TTAA 3 cut(s) 378, 399, 634
MslI CAYNNNNRTG 1 cut(s) 366
MspI CCGG 3 cut(s) 9, 213, 500
MspR9I CCNGG 3 cut(s) 9, 328, 500
MunI CAATTG 1 cut(s) 342
MvaI CCWGG 1 cut(s) 328
MwoI GCNNNNNNNGC 3 cut(s) 197, 200, 542
NciI CCSGG 2 cut(s) 9, 500
NdeII GATC 3 cut(s) 68, 286, 489
NlaIII CATG 4 cut(s) 82, 311, 447, 490
NlaIV GGNNCC 3 cut(s) 474, 504, 564
NspI RCATGY 1 cut(s) 82
NspV TTCGAA 1 cut(s) 523
PasI CCCWGGG 1 cut(s) 327
PciI ACATGT 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 271
PkrI GCNGC 6 cut(s) 193, 196, 199, 202, 320, 484
PleI GAGTC 3 cut(s) 57, 218, 608
PpsI GAGTC 3 cut(s) 57, 218, 608
Ppu21I YACGTR 1 cut(s) 419
PscI ACATGT 1 cut(s) 78
PshBI ATTAAT 2 cut(s) 378, 399
PsiI TTATAA 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 3 cut(s) 474, 504, 564
PspPI GGNCC 4 cut(s) 440, 461, 473, 502
PsrI GAACNNNNNNTAC 2 cut(s) 88, 120
PstI CTGCAG 1 cut(s) 577
PsuI RGATCY 1 cut(s) 68
RsaI GTAC 4 cut(s) 97, 144, 421, 497
RsaNI GTAC 4 cut(s) 96, 143, 420, 496
RseI CAYNNNNRTG 1 cut(s) 366
SaqAI TTAA 3 cut(s) 378, 399, 634
SatI GCNGC 6 cut(s) 192, 195, 198, 201, 319, 483
Sau3AI GATC 3 cut(s) 68, 286, 489
Sau96I GGNCC 4 cut(s) 440, 461, 473, 502
SchI GAGTC 3 cut(s) 57, 218, 608
ScrFI CCNGG 3 cut(s) 9, 328, 500
SduI GDGCHC 1 cut(s) 565
SetI ASST 7 cut(s) 95, 162, 246, 267, 421, 522, 624
SfcI CTRYAG 1 cut(s) 573
SfuI TTCGAA 1 cut(s) 523
SinI GGWCC 3 cut(s) 461, 473, 502
SmiMI CAYNNNNRTG 1 cut(s) 366
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
Sse9I AATT 7 cut(s) 216, 342, 375, 400, 449, 455, 525
SsiI CCGC 1 cut(s) 566
StyD4I CCNGG 3 cut(s) 7, 326, 498
TaaI ACNGT 1 cut(s) 234
TaiI ACGT 2 cut(s) 267, 421
TaqI TCGA 1 cut(s) 523
TaqII GACCGA 1 cut(s) 449
TasI AATT 7 cut(s) 216, 342, 375, 400, 449, 455, 525
TatI WGTACW 1 cut(s) 95
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 3 cut(s) 378, 399, 634
Tru9I TTAA 3 cut(s) 378, 399, 634
TscAI CASTG 1 cut(s) 577
TseI GCWGC 6 cut(s) 191, 194, 197, 200, 318, 482
TspDTI ATGAA 2 cut(s) 167, 296
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 1 cut(s) 577
VpaK11BI GGWCC 3 cut(s) 461, 473, 502
VspI ATTAAT 2 cut(s) 378, 399
XapI RAATTY 1 cut(s) 455
XceI RCATGY 1 cut(s) 82
XcmI CCANNNNNNNNNTGG 1 cut(s) 348
XmnI GAANNNNTTC 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.