Rh7CG007400
ERF Family

RING FYVE PHD zinc finger superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0017306
Physical Location & Seq
Forward (+)
565096 .. 568531
3436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG007400.1

Sequence Viewer

Length: 330 bp
ATGTCGGACTCCAAATCACGTACTATTAGTCAGGGGATTGGCCCATGTCAATTTGAATTCGGTCCAGTATTGGGTCCAATAGCAGCCATGATCAAGTACCCGGACCCATTTATTTCTAAGGTTCGAATTGGCGAAGCATATCAAGCCCAAGTTCCTGACTGGGCTCCGCCCACTGAAGTCAACGGGGTTGCCTTGCCTACTTTCCCTATCTCAATGCCCCTTAGCCTTCAAATTGCTTATCCAGTTTTGAGCTTAACGTTTAGCATGATACCTCTAGTGCGCCTAGTTTGCTCCATCCTTTTGGCTACGTACTTAGCCCCACCGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2 PHD

Protein Analysis

109

Amino Acids

11.74

Weight (kDa)

6.06

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017306)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18011
malus_domestica MD06G1235600.v1.1
prunus_persica Prupe.5G240400_v2.0.a1
pyrus_communis pycom06g21070
rosa_chinensis RchiOBHm_Chr7g0177591
rosa_laevigata RLG00000005523
rosa_multiflora Rmu_sc0010592.1_g000002
rosa_roxburghii Rroxscaffold_3G00275730
rosa_samantha Rh7AG006900 Rh7BG006900 Rh7CG007400 Rh7DG006900
rosa_wichuraiana Rw7G000590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 167
AclI AACGTT 1 cut(s) 257
AcsI RAATTY 1 cut(s) 56
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 3 cut(s) 22, 98, 311
AfiI CCNNNNNNNGG 1 cut(s) 71
AgsI TTSAA 2 cut(s) 56, 230
AluBI AGCT 2 cut(s) 252, 327
AluI AGCT 2 cut(s) 252, 327
AoxI GGCC 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 56
AspLEI GCGC 1 cut(s) 282
AspS9I GGNCC 4 cut(s) 41, 62, 74, 103
AsuC2I CCSGG 1 cut(s) 101
AsuII TTCGAA 1 cut(s) 124
AvaII GGWCC 3 cut(s) 62, 74, 103
BanII GRGCYC 1 cut(s) 166
BbvI GCAGC 1 cut(s) 95
BccI CCATC 1 cut(s) 302
BclI TGATCA 1 cut(s) 90
BcnI CCSGG 1 cut(s) 101
BfaI CTAG 3 cut(s) 275, 284, 328
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 3 cut(s) 62, 74, 103
BmgT120I GGNCC 4 cut(s) 41, 62, 74, 103
BmiI GGNNCC 3 cut(s) 75, 105, 165
BmrFI CCNGG 1 cut(s) 101
BmrI ACTGGG 1 cut(s) 169
BmuI ACTGGG 1 cut(s) 169
Bpu10I CCTNAGC 1 cut(s) 221
Bpu14I TTCGAA 1 cut(s) 124
BpuMI CCSGG 1 cut(s) 101
BsaAI YACGTR 2 cut(s) 20, 309
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse1I ACTGG 3 cut(s) 65, 164, 242
BseGI GGATG 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 71
BseNI ACTGG 3 cut(s) 65, 164, 242
BseXI GCAGC 1 cut(s) 95
BshFI GGCC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 71
BsnI GGCC 1 cut(s) 42
Bsp119I TTCGAA 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 1 cut(s) 167
BspANI GGCC 1 cut(s) 42
BspLI GGNNCC 3 cut(s) 75, 105, 165
BspT104I TTCGAA 1 cut(s) 124
BsrI ACTGG 3 cut(s) 65, 164, 242
BssMI GATC 1 cut(s) 90
BstBAI YACGTR 2 cut(s) 20, 309
BstBI TTCGAA 1 cut(s) 124
BstDEI CTNAG 3 cut(s) 117, 221, 313
BstF5I GGATG 1 cut(s) 294
BstHHI GCGC 1 cut(s) 282
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 2 cut(s) 143, 288
BstSCI CCNGG 1 cut(s) 99
BstSNI TACGTA 1 cut(s) 309
BstV1I GCAGC 1 cut(s) 95
BstXI CCANNNNNNTGG 1 cut(s) 301
BsuRI GGCC 1 cut(s) 42
BtsCI GGATG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 171
CfoI GCGC 1 cut(s) 282
Cfr13I GGNCC 4 cut(s) 41, 62, 74, 103
Csp6I GTAC 3 cut(s) 21, 97, 310
CviAII CATG 3 cut(s) 45, 88, 265
CviJI RGCY 9 cut(s) 42, 86, 146, 164, 225, 252, 305, 317, 327
CviKI_1 RGCY 9 cut(s) 42, 86, 146, 164, 225, 252, 305, 317, 327
CviQI GTAC 3 cut(s) 21, 97, 310
DdeI CTNAG 3 cut(s) 117, 221, 313
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 156
Eco105I TACGTA 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 166
Eco47I GGWCC 3 cut(s) 62, 74, 103
Eco57I CTGAAG 1 cut(s) 195
EcoRI GAATTC 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 166
FaeI CATG 3 cut(s) 48, 91, 268
FaiI YATR 4 cut(s) 46, 89, 139, 266
FatI CATG 3 cut(s) 44, 87, 264
FbaI TGATCA 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 1 cut(s) 281
FriOI GRGCYC 1 cut(s) 166
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 3 cut(s) 275, 284, 328
GlaI GCGC 1 cut(s) 281
GluI GCNGC 1 cut(s) 84
HaeIII GGCC 1 cut(s) 42
HapII CCGG 1 cut(s) 101
HhaI GCGC 1 cut(s) 282
Hin1II CATG 3 cut(s) 48, 91, 268
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 1 cut(s) 8
HpaII CCGG 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 1 cut(s) 236
HpyCH4IV ACGT 3 cut(s) 19, 257, 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 288
HpyF3I CTNAG 3 cut(s) 117, 221, 313
HpySE526I ACGT 3 cut(s) 19, 257, 308
Hsp92II CATG 3 cut(s) 48, 91, 268
HspAI GCGC 1 cut(s) 280
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 2 cut(s) 169, 296
LpnPI CCDG 6 cut(s) 17, 78, 114, 145, 168, 255
Lsp1109I GCAGC 1 cut(s) 95
MaeI CTAG 3 cut(s) 275, 284, 328
MaeII ACGT 3 cut(s) 19, 257, 308
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 4 cut(s) 50, 56, 126, 231
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 1 cut(s) 282
MseI TTAA 1 cut(s) 254
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 143, 288
NciI CCSGG 1 cut(s) 101
NdeII GATC 1 cut(s) 90
NlaIII CATG 3 cut(s) 48, 91, 268
NlaIV GGNNCC 3 cut(s) 75, 105, 165
NspV TTCGAA 1 cut(s) 124
PkrI GCNGC 1 cut(s) 85
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
Ppu21I YACGTR 2 cut(s) 20, 309
Psp1406I AACGTT 1 cut(s) 257
PspN4I GGNNCC 3 cut(s) 75, 105, 165
PspPI GGNCC 4 cut(s) 41, 62, 74, 103
RsaI GTAC 3 cut(s) 22, 98, 311
RsaNI GTAC 3 cut(s) 21, 97, 310
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 4 cut(s) 41, 62, 74, 103
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 1 cut(s) 166
SetI ASST 7 cut(s) 22, 123, 254, 260, 274, 311, 329
SfuI TTCGAA 1 cut(s) 124
SinI GGWCC 3 cut(s) 62, 74, 103
SnaBI TACGTA 1 cut(s) 309
Sse9I AATT 4 cut(s) 50, 56, 126, 231
SsiI CCGC 1 cut(s) 167
SspMI CTAG 3 cut(s) 275, 284, 328
StyD4I CCNGG 1 cut(s) 99
TaiI ACGT 3 cut(s) 22, 260, 311
TaqI TCGA 1 cut(s) 124
TaqII GACCGA 1 cut(s) 50
TasI AATT 4 cut(s) 50, 56, 126, 231
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 1 cut(s) 178
TseI GCWGC 1 cut(s) 83
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 3 cut(s) 62, 74, 103
XapI RAATTY 1 cut(s) 56
XspI CTAG 3 cut(s) 275, 284, 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.