RLG00000005523
ERF Family

RING FYVE PHD zinc finger superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017306
Physical Location & Seq
Reverse (-)
68287415 .. 68289070
1656 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005523

Sequence Viewer

Length: 678 bp
ATGTTTCCCGGTTTCCCTACCAGATTCCAACTCCACCGAAAGAGCCACACCCACACAGGCCGACTCAGGTCTGAAAACATGTTAGTTCAGAGCTGTATTCCGAGTTCAGTTGAAGTAAGGAAACAAGATCTTTGCATTTCCGTACTTAAAACTTATAAGCTCCAAAAGATTTCCCTTCATAAAAGTTGTGCTGCGGCTGCTGCGGCTGCTCAAGTTTCCGGAATTGATGACTCTATTCAGTCGTGTAAGCTGTGTGGTAAATCCGAAAACGTATTGAATCTGTTACTTTGTGATTGTTGTGAGGAAGCGTTTCATGTTTCTTGCTGCAAACCCAGGGTGGTTTTGCCAATTGACGAGTGGTTTTGTCATTCCTGTGCAAAAATTGATCCCAAAATGTCGGAGATTAATTCCTTCTCCAAATCACGTACTATTAGTCAGGGGATTGGCCCATGTCAATTTGAATTCGGTCCAGTATTGAGTCCAATAGCAGCTATGATCAAGTACCCGGACCCATTTATTTCTAAGGTTCGAATTGGCGAAGCATATCAAGCCCAAGTTCCTGACTGGGCTCCGCCCACTGAGGTCAAAACTGACAACGGGGGTTGTTCTGAATGTGCCGACTCTCAGTTGAAATCACATACTGCTTCTAGAAAGAGAAAACAAGAGTTTTCATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2 PHD

Protein Analysis

226

Amino Acids

24.86

Weight (kDa)

8.6

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 82 - 125 3.5e-06 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017306)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18011
malus_domestica MD06G1235600.v1.1
prunus_persica Prupe.5G240400_v2.0.a1
pyrus_communis pycom06g21070
rosa_chinensis RchiOBHm_Chr7g0177591
rosa_laevigata RLG00000005523
rosa_multiflora Rmu_sc0010592.1_g000002
rosa_roxburghii Rroxscaffold_3G00275730
rosa_samantha Rh7AG006900 Rh7BG006900 Rh7CG007400 Rh7DG006900
rosa_wichuraiana Rw7G000590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
AccIII TCCGGA 1 cut(s) 218
AciI CCGC 3 cut(s) 194, 203, 572
AclWI GGATC 1 cut(s) 380
AcsI RAATTY 1 cut(s) 461
AfaI GTAC 3 cut(s) 144, 427, 503
AflIII ACRYGT 1 cut(s) 78
AgsI TTSAA 4 cut(s) 113, 277, 461, 631
AjnI CCWGG 1 cut(s) 332
AluBI AGCT 4 cut(s) 93, 160, 250, 491
AluI AGCT 4 cut(s) 93, 160, 250, 491
AlwI GGATC 1 cut(s) 380
Aor13HI TCCGGA 1 cut(s) 218
AoxI GGCC 2 cut(s) 58, 445
ApeKI GCWGC 6 cut(s) 191, 197, 200, 206, 324, 488
ApoI RAATTY 1 cut(s) 461
AseI ATTAAT 1 cut(s) 405
Asp700I GAANNNNTTC 1 cut(s) 309
AspS9I GGNCC 3 cut(s) 446, 467, 508
AsuC2I CCSGG 2 cut(s) 9, 506
AsuII TTCGAA 1 cut(s) 529
AvaII GGWCC 2 cut(s) 467, 508
BanII GRGCYC 1 cut(s) 571
BbvI GCAGC 6 cut(s) 178, 184, 187, 193, 311, 500
BciT130I CCWGG 1 cut(s) 334
BclI TGATCA 1 cut(s) 495
BcnI CCSGG 2 cut(s) 9, 506
BfaI CTAG 1 cut(s) 648
BglII AGATCT 1 cut(s) 127
BisI GCNGC 8 cut(s) 192, 195, 198, 201, 204, 207, 325, 489
BlsI GCNGC 8 cut(s) 193, 196, 199, 202, 205, 208, 326, 490
Bme1390I CCNGG 3 cut(s) 9, 334, 506
Bme18I GGWCC 2 cut(s) 467, 508
BmgT120I GGNCC 3 cut(s) 446, 467, 508
BmiI GGNNCC 2 cut(s) 510, 570
BmrFI CCNGG 3 cut(s) 9, 334, 506
BmrI ACTGGG 1 cut(s) 574
BmuI ACTGGG 1 cut(s) 574
BoxI GACNNNNGTC 1 cut(s) 67
Bpu14I TTCGAA 1 cut(s) 529
BpuEI CTTGAG 1 cut(s) 195
BpuMI CCSGG 2 cut(s) 9, 506
BsaAI YACGTR 1 cut(s) 425
BsaJI CCNNGG 2 cut(s) 332, 333
BsaWI WCCGGW 1 cut(s) 218
Bse1I ACTGG 2 cut(s) 470, 569
BseAI TCCGGA 1 cut(s) 218
BseBI CCWGG 1 cut(s) 334
BseDI CCNNGG 2 cut(s) 332, 333
BseMII CTCAG 3 cut(s) 79, 570, 638
BseNI ACTGG 2 cut(s) 470, 569
BseXI GCAGC 6 cut(s) 178, 184, 187, 193, 311, 500
BshFI GGCC 2 cut(s) 60, 447
BsiSI CCGG 3 cut(s) 9, 219, 506
BsnI GGCC 2 cut(s) 60, 447
Bsp119I TTCGAA 1 cut(s) 529
Bsp1286I GDGCHC 1 cut(s) 571
Bsp13I TCCGGA 1 cut(s) 218
Bsp143I GATC 3 cut(s) 127, 385, 495
BspACI CCGC 3 cut(s) 194, 203, 572
BspANI GGCC 2 cut(s) 60, 447
BspCNI CTCAG 3 cut(s) 78, 571, 637
BspEI TCCGGA 1 cut(s) 218
BspLI GGNNCC 2 cut(s) 510, 570
BspPI GGATC 1 cut(s) 380
BspT104I TTCGAA 1 cut(s) 529
BsrI ACTGG 2 cut(s) 470, 569
BssECI CCNNGG 2 cut(s) 332, 333
BssMI GATC 3 cut(s) 127, 385, 495
Bst2UI CCWGG 1 cut(s) 334
BstBAI YACGTR 1 cut(s) 425
BstBI TTCGAA 1 cut(s) 529
BstDEI CTNAG 4 cut(s) 65, 522, 579, 624
BstKTI GATC 3 cut(s) 130, 388, 498
BstMBI GATC 3 cut(s) 127, 385, 495
BstMWI GCNNNNNNNGC 5 cut(s) 197, 200, 203, 206, 548
BstNI CCWGG 1 cut(s) 334
BstNSI RCATGY 1 cut(s) 82
BstPAI GACNNNNGTC 1 cut(s) 67
BstSCI CCNGG 3 cut(s) 7, 332, 504
BstV1I GCAGC 6 cut(s) 178, 184, 187, 193, 311, 500
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuRI GGCC 2 cut(s) 60, 447
BtsIMutI CAGTG 1 cut(s) 576
Cfr13I GGNCC 3 cut(s) 446, 467, 508
Csp6I GTAC 3 cut(s) 143, 426, 502
CviAII CATG 3 cut(s) 79, 314, 450
CviQI GTAC 3 cut(s) 143, 426, 502
DdeI CTNAG 4 cut(s) 65, 522, 579, 624
DpnI GATC 3 cut(s) 129, 387, 497
DpnII GATC 3 cut(s) 127, 385, 495
EciI GGCGGA 1 cut(s) 561
Eco24I GRGCYC 1 cut(s) 571
Eco47I GGWCC 2 cut(s) 467, 508
EcoRI GAATTC 1 cut(s) 461
EcoRII CCWGG 1 cut(s) 332
EcoT38I GRGCYC 1 cut(s) 571
FaeI CATG 3 cut(s) 82, 317, 453
FaiI YATR 9 cut(s) 80, 156, 180, 315, 451, 494, 544, 639, 676
FatI CATG 3 cut(s) 78, 313, 449
FbaI TGATCA 1 cut(s) 495
Fnu4HI GCNGC 8 cut(s) 192, 195, 198, 201, 204, 207, 325, 489
FriOI GRGCYC 1 cut(s) 571
Fsp4HI GCNGC 8 cut(s) 192, 195, 198, 201, 204, 207, 325, 489
FspBI CTAG 1 cut(s) 648
GluI GCNGC 8 cut(s) 192, 195, 198, 201, 204, 207, 325, 489
HaeIII GGCC 2 cut(s) 60, 447
HapII CCGG 3 cut(s) 9, 219, 506
Hin1II CATG 3 cut(s) 82, 317, 453
HinfI GANTC 6 cut(s) 24, 63, 230, 277, 478, 620
HpaII CCGG 3 cut(s) 9, 219, 506
Hpy188I TCNGA 6 cut(s) 73, 90, 102, 265, 400, 610
Hpy188III TCNNGA 3 cut(s) 219, 560, 648
HpyAV CCTTC 2 cut(s) 185, 421
HpyCH4IV ACGT 2 cut(s) 270, 424
HpyCH4V TGCA 3 cut(s) 135, 327, 377
HpyF10VI GCNNNNNNNGC 5 cut(s) 197, 200, 203, 206, 548
HpyF3I CTNAG 4 cut(s) 65, 522, 579, 624
HpySE526I ACGT 2 cut(s) 270, 424
Hsp92II CATG 3 cut(s) 82, 317, 453
Kpn2I TCCGGA 1 cut(s) 218
Ksp22I TGATCA 1 cut(s) 495
Kzo9I GATC 3 cut(s) 127, 385, 495
LmnI GCTCC 2 cut(s) 165, 574
Lsp1109I GCAGC 6 cut(s) 178, 184, 187, 193, 311, 500
MaeI CTAG 1 cut(s) 648
MaeII ACGT 2 cut(s) 270, 424
MaeIII GTNAC 1 cut(s) 282
MalI GATC 3 cut(s) 129, 387, 497
MboI GATC 3 cut(s) 127, 385, 495
MfeI CAATTG 1 cut(s) 348
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 571
MluCI AATT 7 cut(s) 222, 348, 381, 406, 455, 461, 531
MlyI GAGTC 4 cut(s) 57, 224, 487, 614
MmeI TCCRAC 2 cut(s) 52, 378
MnlI CCTC 2 cut(s) 295, 574
MroI TCCGGA 1 cut(s) 218
MroXI GAANNNNTTC 1 cut(s) 309
MseI TTAA 2 cut(s) 147, 405
MslI CAYNNNNRTG 1 cut(s) 372
MspI CCGG 3 cut(s) 9, 219, 506
MspR9I CCNGG 3 cut(s) 9, 334, 506
MunI CAATTG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 334
MwoI GCNNNNNNNGC 5 cut(s) 197, 200, 203, 206, 548
NciI CCSGG 2 cut(s) 9, 506
NdeII GATC 3 cut(s) 127, 385, 495
NlaIII CATG 3 cut(s) 82, 317, 453
NlaIV GGNNCC 2 cut(s) 510, 570
NspI RCATGY 1 cut(s) 82
NspV TTCGAA 1 cut(s) 529
PasI CCCWGGG 1 cut(s) 333
PciI ACATGT 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 2 cut(s) 24, 277
PkrI GCNGC 8 cut(s) 193, 196, 199, 202, 205, 208, 326, 490
PleI GAGTC 4 cut(s) 57, 224, 486, 614
PpsI GAGTC 4 cut(s) 57, 224, 486, 614
Ppu21I YACGTR 1 cut(s) 425
PscI ACATGT 1 cut(s) 78
PshAI GACNNNNGTC 1 cut(s) 67
PshBI ATTAAT 1 cut(s) 405
PsiI TTATAA 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 332
PspGI CCWGG 1 cut(s) 332
PspN4I GGNNCC 2 cut(s) 510, 570
PspPI GGNCC 3 cut(s) 446, 467, 508
PsrI GAACNNNNNNTAC 2 cut(s) 88, 120
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 3 cut(s) 144, 427, 503
RsaNI GTAC 3 cut(s) 143, 426, 502
RseI CAYNNNNRTG 1 cut(s) 372
SaqAI TTAA 2 cut(s) 147, 405
SatI GCNGC 8 cut(s) 192, 195, 198, 201, 204, 207, 325, 489
Sau3AI GATC 3 cut(s) 127, 385, 495
Sau96I GGNCC 3 cut(s) 446, 467, 508
SchI GAGTC 4 cut(s) 57, 224, 487, 614
ScrFI CCNGG 3 cut(s) 9, 334, 506
SduI GDGCHC 1 cut(s) 571
SetI ASST 9 cut(s) 71, 95, 162, 252, 273, 427, 493, 528, 585
SfuI TTCGAA 1 cut(s) 529
SinI GGWCC 2 cut(s) 467, 508
SmiMI CAYNNNNRTG 1 cut(s) 372
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
Sse9I AATT 7 cut(s) 222, 348, 381, 406, 455, 461, 531
SsiI CCGC 3 cut(s) 194, 203, 572
SspMI CTAG 1 cut(s) 648
StyD4I CCNGG 3 cut(s) 7, 332, 504
TaiI ACGT 2 cut(s) 273, 427
TaqI TCGA 1 cut(s) 529
TaqII GACCGA 1 cut(s) 455
TasI AATT 7 cut(s) 222, 348, 381, 406, 455, 461, 531
TauI GCSGC 2 cut(s) 197, 206
TfiI GAWTC 2 cut(s) 24, 277
Tru1I TTAA 2 cut(s) 147, 405
Tru9I TTAA 2 cut(s) 147, 405
TscAI CASTG 1 cut(s) 583
TseI GCWGC 6 cut(s) 191, 197, 200, 206, 324, 488
TspDTI ATGAA 3 cut(s) 167, 302, 660
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 1 cut(s) 583
VpaK11BI GGWCC 2 cut(s) 467, 508
VspI ATTAAT 1 cut(s) 405
XapI RAATTY 1 cut(s) 461
XbaI TCTAGA 1 cut(s) 647
XceI RCATGY 1 cut(s) 82
XcmI CCANNNNNNNNNTGG 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.