Rmu_sc0010592.1_g000002
ERF Family

RING FYVE PHD zinc finger superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010592.1
OG0017306
Physical Location & Seq
Reverse (-)
3405 .. 6523
3119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010592.1_g000002.1.cds

Sequence Viewer

Length: 840 bp
atgtcatctgttttcagtggcaaagctgcttatggattgctgaaagacatggctgagaatccaaagaagtgggaaggaagaaagatcctcttcatacacacaggagggctgctcgggttgtttgacaaggttgagcagattgctccatcattgggaaaatacagccggatggatgtctgcgaatctgttccacggaaagatgatttcaactcgatccaccgaaagacccacacccacacacgccgacgccgacgccgactcagatctgaaaacatgttagttcagagctgtactccgagttcagttgaagtaaggaaacaagatgtttgcatttccgtacttaaaacgtataagctccaaaagatttcccttcataaaagttgtgctgctgctgctcaagtttccggaattgatgactctattcagtcgtgtaagctgtgtggtaaatccgaaaacgtattgaatctgttactttgtgatcgttgtgaggaagcgtttcatgtgtcttgctgcaaacccagggtggttttgccgattgacgagtggttttgtcgttcctgtgcaaaaatgtcggactccaaatcacgtactattagtcaggggattggcccatgtcaatttgaattcggtccagtattgggtccaatagcagccatgatcaagtacccgcacccatttatttctaaggttcgaatcggcgaagcatatcaagcccaagttcctgactgggctccgcccactgaagccaaaactgacaacgggggttgttctgattgtgccgactctcagttgaaatcacatactgcttctagaaagagaaaacaagagttttcatcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2 PHD

Protein Analysis

279

Amino Acids

31.13

Weight (kDa)

9.24

Isoelectric Point (pI)

56.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017306)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18011
malus_domestica MD06G1235600.v1.1
prunus_persica Prupe.5G240400_v2.0.a1
pyrus_communis pycom06g21070
rosa_chinensis RchiOBHm_Chr7g0177591
rosa_laevigata RLG00000005523
rosa_multiflora Rmu_sc0010592.1_g000002
rosa_roxburghii Rroxscaffold_3G00275730
rosa_samantha Rh7AG006900 Rh7BG006900 Rh7CG007400 Rh7DG006900
rosa_wichuraiana Rw7G000590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 404
AciI CCGC 2 cut(s) 668, 734
AclWI GGATC 2 cut(s) 79, 208
AcsI RAATTY 1 cut(s) 623
AcuI CTGAAG 1 cut(s) 762
AcyI GRCGYC 2 cut(s) 247, 253
AfaI GTAC 4 cut(s) 292, 339, 589, 665
AfiI CCNNNNNNNGG 2 cut(s) 152, 638
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 5 cut(s) 208, 308, 463, 623, 793
AjnI CCWGG 1 cut(s) 518
AluBI AGCT 4 cut(s) 26, 288, 355, 436
AluI AGCT 4 cut(s) 26, 288, 355, 436
AlwI GGATC 2 cut(s) 79, 208
Ama87I CYCGRG 1 cut(s) 113
Aor13HI TCCGGA 1 cut(s) 404
AoxI GGCC 1 cut(s) 607
ApeKI GCWGC 7 cut(s) 26, 109, 386, 389, 392, 510, 650
ApoI RAATTY 1 cut(s) 623
Asp700I GAANNNNTTC 2 cut(s) 186, 495
AspS9I GGNCC 3 cut(s) 608, 629, 641
AsuII TTCGAA 1 cut(s) 691
AvaI CYCGRG 1 cut(s) 113
AvaII GGWCC 2 cut(s) 629, 641
BanII GRGCYC 1 cut(s) 733
BbvI GCAGC 7 cut(s) 13, 96, 373, 376, 379, 497, 662
BccI CCATC 2 cut(s) 154, 163
BcgI CGANNNNNNTGC 2 cut(s) 552, 586
BciT130I CCWGG 1 cut(s) 520
BclI TGATCA 1 cut(s) 657
BfaI CTAG 1 cut(s) 810
BglII AGATCT 1 cut(s) 263
BisI GCNGC 7 cut(s) 27, 110, 387, 390, 393, 511, 651
BlsI GCNGC 7 cut(s) 28, 111, 388, 391, 394, 512, 652
Bme1390I CCNGG 1 cut(s) 520
Bme18I GGWCC 2 cut(s) 629, 641
BmeT110I CYCGRG 1 cut(s) 113
BmgT120I GGNCC 3 cut(s) 608, 629, 641
BmiI GGNNCC 2 cut(s) 642, 732
BmrFI CCNGG 1 cut(s) 520
BmrI ACTGGG 1 cut(s) 736
BmuI ACTGGG 1 cut(s) 736
BplI GAGNNNNNCTC 4 cut(s) 96, 128, 277, 309
Bpu14I TTCGAA 1 cut(s) 691
BpuEI CTTGAG 1 cut(s) 381
BsaAI YACGTR 1 cut(s) 587
BsaHI GRCGYC 2 cut(s) 247, 253
BsaJI CCNNGG 3 cut(s) 191, 518, 519
BsaWI WCCGGW 1 cut(s) 404
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 638
Bse1I ACTGG 2 cut(s) 632, 731
BseAI TCCGGA 1 cut(s) 404
BseBI CCWGG 1 cut(s) 520
BseDI CCNNGG 3 cut(s) 191, 518, 519
BseGI GGATG 2 cut(s) 174, 178
BseLI CCNNNNNNNGG 2 cut(s) 152, 638
BseMII CTCAG 3 cut(s) 45, 274, 800
BseNI ACTGG 2 cut(s) 632, 731
BseXI GCAGC 7 cut(s) 13, 96, 373, 376, 379, 497, 662
BshFI GGCC 1 cut(s) 609
BsiHKCI CYCGRG 1 cut(s) 113
BsiSI CCGG 2 cut(s) 166, 405
BslI CCNNNNNNNGG 2 cut(s) 152, 638
BsnI GGCC 1 cut(s) 609
BsoBI CYCGRG 1 cut(s) 113
Bsp119I TTCGAA 1 cut(s) 691
Bsp1286I GDGCHC 1 cut(s) 733
Bsp13I TCCGGA 1 cut(s) 404
Bsp143I GATC 5 cut(s) 84, 213, 263, 478, 657
BspACI CCGC 2 cut(s) 668, 734
BspANI GGCC 1 cut(s) 609
BspCNI CTCAG 3 cut(s) 46, 273, 799
BspEI TCCGGA 1 cut(s) 404
BspLI GGNNCC 2 cut(s) 642, 732
BspPI GGATC 2 cut(s) 79, 208
BspT104I TTCGAA 1 cut(s) 691
BsrI ACTGG 2 cut(s) 632, 731
BssECI CCNNGG 3 cut(s) 191, 518, 519
BssMI GATC 5 cut(s) 84, 213, 263, 478, 657
BssNI GRCGYC 2 cut(s) 247, 253
Bst2UI CCWGG 1 cut(s) 520
Bst6I CTCTTC 1 cut(s) 95
BstACI GRCGYC 2 cut(s) 247, 253
BstBAI YACGTR 1 cut(s) 587
BstBI TTCGAA 1 cut(s) 691
BstDEI CTNAG 4 cut(s) 54, 260, 684, 786
BstDSI CCRYGG 1 cut(s) 191
BstF5I GGATG 2 cut(s) 174, 178
BstKTI GATC 5 cut(s) 87, 216, 266, 481, 660
BstMBI GATC 5 cut(s) 84, 213, 263, 478, 657
BstMWI GCNNNNNNNGC 2 cut(s) 392, 710
BstNI CCWGG 1 cut(s) 520
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 518
BstV1I GCAGC 7 cut(s) 13, 96, 373, 376, 379, 497, 662
BstX2I RGATCY 2 cut(s) 84, 263
BstXI CCANNNNNNTGG 1 cut(s) 69
BstYI RGATCY 2 cut(s) 84, 263
BsuRI GGCC 1 cut(s) 609
BtgI CCRYGG 1 cut(s) 191
BtsCI GGATG 2 cut(s) 174, 178
BtsIMutI CAGTG 2 cut(s) 22, 738
Cfr13I GGNCC 3 cut(s) 608, 629, 641
CseI GACGC 2 cut(s) 255, 261
Csp6I GTAC 4 cut(s) 291, 338, 588, 664
CviAII CATG 5 cut(s) 49, 274, 500, 612, 655
CviQI GTAC 4 cut(s) 291, 338, 588, 664
DdeI CTNAG 4 cut(s) 54, 260, 684, 786
DpnI GATC 5 cut(s) 86, 215, 265, 480, 659
DpnII GATC 5 cut(s) 84, 213, 263, 478, 657
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
EciI GGCGGA 1 cut(s) 723
Eco24I GRGCYC 1 cut(s) 733
Eco47I GGWCC 2 cut(s) 629, 641
Eco57I CTGAAG 1 cut(s) 762
Eco88I CYCGRG 1 cut(s) 113
EcoRI GAATTC 1 cut(s) 623
EcoRII CCWGG 1 cut(s) 518
EcoT38I GRGCYC 1 cut(s) 733
FaeI CATG 5 cut(s) 52, 277, 503, 615, 658
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FatI CATG 5 cut(s) 48, 273, 499, 611, 654
FauI CCCGC 1 cut(s) 675
FbaI TGATCA 1 cut(s) 657
Fnu4HI GCNGC 7 cut(s) 27, 110, 387, 390, 393, 511, 651
FokI GGATG 2 cut(s) 181, 185
FriOI GRGCYC 1 cut(s) 733
Fsp4HI GCNGC 7 cut(s) 27, 110, 387, 390, 393, 511, 651
FspBI CTAG 1 cut(s) 810
GluI GCNGC 7 cut(s) 27, 110, 387, 390, 393, 511, 651
HaeIII GGCC 1 cut(s) 609
HapII CCGG 2 cut(s) 166, 405
HgaI GACGC 2 cut(s) 255, 261
Hin1I GRCGYC 2 cut(s) 247, 253
Hin1II CATG 5 cut(s) 52, 277, 503, 615, 658
HinfI GANTC 8 cut(s) 58, 182, 258, 416, 463, 575, 693, 782
HpaII CCGG 2 cut(s) 166, 405
Hpy188I TCNGA 7 cut(s) 263, 268, 285, 297, 451, 574, 772
Hpy188III TCNNGA 3 cut(s) 405, 722, 810
Hpy99I CGWCG 2 cut(s) 249, 255
HpyAV CCTTC 2 cut(s) 68, 380
HpyCH4IV ACGT 3 cut(s) 347, 456, 586
HpyCH4V TGCA 3 cut(s) 330, 513, 563
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 710
HpyF3I CTNAG 4 cut(s) 54, 260, 684, 786
HpySE526I ACGT 3 cut(s) 347, 456, 586
Hsp92I GRCGYC 2 cut(s) 247, 253
Hsp92II CATG 5 cut(s) 52, 277, 503, 615, 658
Kpn2I TCCGGA 1 cut(s) 404
Ksp22I TGATCA 1 cut(s) 657
Kzo9I GATC 5 cut(s) 84, 213, 263, 478, 657
LmnI GCTCC 3 cut(s) 148, 360, 736
Lsp1109I GCAGC 7 cut(s) 13, 96, 373, 376, 379, 497, 662
MaeI CTAG 1 cut(s) 810
MaeII ACGT 3 cut(s) 347, 456, 586
MaeIII GTNAC 1 cut(s) 468
MalI GATC 5 cut(s) 86, 215, 265, 480, 659
MboI GATC 5 cut(s) 84, 213, 263, 478, 657
MboII GAAGA 2 cut(s) 82, 90
MflI RGATCY 2 cut(s) 84, 263
MhlI GDGCHC 1 cut(s) 733
MluCI AATT 3 cut(s) 408, 617, 623
MlyI GAGTC 4 cut(s) 252, 410, 569, 776
MmeI TCCRAC 1 cut(s) 552
MnlI CCTC 3 cut(s) 98, 98, 481
MroI TCCGGA 1 cut(s) 404
MroXI GAANNNNTTC 2 cut(s) 186, 495
MseI TTAA 1 cut(s) 342
MspI CCGG 2 cut(s) 166, 405
MspR9I CCNGG 1 cut(s) 520
MvaI CCWGG 1 cut(s) 520
MwoI GCNNNNNNNGC 2 cut(s) 392, 710
NdeII GATC 5 cut(s) 84, 213, 263, 478, 657
NlaIII CATG 5 cut(s) 52, 277, 503, 615, 658
NlaIV GGNNCC 2 cut(s) 642, 732
NspI RCATGY 1 cut(s) 277
NspV TTCGAA 1 cut(s) 691
PasI CCCWGGG 1 cut(s) 519
PciI ACATGT 1 cut(s) 273
PcsI WCGNNNNNNNCGW 2 cut(s) 247, 253
PdmI GAANNNNTTC 2 cut(s) 186, 495
PfeI GAWTC 4 cut(s) 58, 182, 463, 693
PkrI GCNGC 7 cut(s) 28, 111, 388, 391, 394, 512, 652
PleI GAGTC 4 cut(s) 252, 410, 569, 776
PpsI GAGTC 4 cut(s) 252, 410, 569, 776
Ppu21I YACGTR 1 cut(s) 587
PscI ACATGT 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 518
PspGI CCWGG 1 cut(s) 518
PspN4I GGNNCC 2 cut(s) 642, 732
PspPI GGNCC 3 cut(s) 608, 629, 641
PsrI GAACNNNNNNTAC 2 cut(s) 283, 315
PsuI RGATCY 2 cut(s) 84, 263
RsaI GTAC 4 cut(s) 292, 339, 589, 665
RsaNI GTAC 4 cut(s) 291, 338, 588, 664
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 7 cut(s) 27, 110, 387, 390, 393, 511, 651
Sau3AI GATC 5 cut(s) 84, 213, 263, 478, 657
Sau96I GGNCC 3 cut(s) 608, 629, 641
SchI GAGTC 4 cut(s) 252, 410, 569, 776
ScrFI CCNGG 1 cut(s) 520
SduI GDGCHC 1 cut(s) 733
SetI ASST 9 cut(s) 28, 132, 290, 350, 357, 438, 459, 589, 690
SfuI TTCGAA 1 cut(s) 691
SinI GGWCC 2 cut(s) 629, 641
SmlI CTYRAG 1 cut(s) 396
SmoI CTYRAG 1 cut(s) 396
Sse9I AATT 3 cut(s) 408, 617, 623
SsiI CCGC 2 cut(s) 668, 734
SspMI CTAG 1 cut(s) 810
StyD4I CCNGG 1 cut(s) 518
TaiI ACGT 3 cut(s) 350, 459, 589
TaqI TCGA 2 cut(s) 212, 691
TaqII GACCGA 1 cut(s) 617
TasI AATT 3 cut(s) 408, 617, 623
TatI WGTACW 1 cut(s) 290
TfiI GAWTC 4 cut(s) 58, 182, 463, 693
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 2 cut(s) 22, 745
TseI GCWGC 7 cut(s) 26, 109, 386, 389, 392, 510, 650
TspDTI ATGAA 4 cut(s) 82, 362, 488, 822
TspGWI ACGGA 2 cut(s) 208, 325
TspRI CASTG 2 cut(s) 22, 745
VpaK11BI GGWCC 2 cut(s) 629, 641
XapI RAATTY 1 cut(s) 623
XbaI TCTAGA 1 cut(s) 809
XceI RCATGY 1 cut(s) 277
XmnI GAANNNNTTC 2 cut(s) 186, 495
XspI CTAG 1 cut(s) 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.