RchiOBHm_Chr7g0177591
ERF Family

RING FYVE PHD zinc finger superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0017306
Physical Location & Seq
Forward (+)
491612 .. 494327
2716 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15820

Sequence Viewer

Length: 666 bp
ATGTTTCCCGGTTTCCCTACCAGATTTCAACTCCACCGAAAGACCCACACACGCCGACGCCGACGCCGACTCAGATCTGAAAACATGTTAGTTCAGAGCTGTACTCCGAGTTCAGTTGAAGCAAGGAAACAGGATCTTTGCATTTCCGTACTTAAAACGTATAAGCTCCAAAAGATTTCCCTTCATAAAAGTTGTGCTGCTGCTGCTGTTCAAGTTTCCGGAATTGATGACTCTATTCAGTCGTGTAAGCTGTGTGGTAAATCCGAAAACGTATTGAATCTGTTACTTTGTGATCGTTGTGAGGAAGCGTTTCATGTGTCTTGCTGCAAACCCAGGGTGGTTTTGCCAATTGACGAGTGGTTTTGTCATTCCTGTGCAAAAATGTCGGAGATTAATTCCTTCTCCAAATCACGTACTATTAGTCAGGGGATTGGCCCATGTCAATTTGAATTCGGTCCAGTATTGGGTCCAATAGCAGCCATGATCAAGTACCCGGACCCATTTATTTCTAAGGTTCGAATTGGCGAAGCATATCAAGCCCAAGTTCCTGACTGGGCTCCTCCCACTGAAGTCAAAACTGACAACGGGGGTTGTTCTGATTGTGCCGACTCTCAGTTGAAATCACATACTGCTTCTAGAAAGAGAAAACAAGAGTTTTCATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2 PHD

Protein Analysis

221

Amino Acids

24.76

Weight (kDa)

9.17

Isoelectric Point (pI)

63.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 82 - 125 5.5e-08 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017306)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18011
malus_domestica MD06G1235600.v1.1
prunus_persica Prupe.5G240400_v2.0.a1
pyrus_communis pycom06g21070
rosa_chinensis RchiOBHm_Chr7g0177591
rosa_laevigata RLG00000005523
rosa_multiflora Rmu_sc0010592.1_g000002
rosa_roxburghii Rroxscaffold_3G00275730
rosa_samantha Rh7AG006900 Rh7BG006900 Rh7CG007400 Rh7DG006900
rosa_wichuraiana Rw7G000590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 218
AclWI GGATC 1 cut(s) 141
AcsI RAATTY 1 cut(s) 449
AcuI CTGAAG 1 cut(s) 588
AcyI GRCGYC 2 cut(s) 58, 64
AfaI GTAC 4 cut(s) 103, 150, 415, 491
AfiI CCNNNNNNNGG 1 cut(s) 464
AflIII ACRYGT 1 cut(s) 84
AgsI TTSAA 6 cut(s) 29, 119, 212, 277, 449, 619
AjnI CCWGG 1 cut(s) 332
AluBI AGCT 3 cut(s) 99, 166, 250
AluI AGCT 3 cut(s) 99, 166, 250
AlwI GGATC 1 cut(s) 141
Aor13HI TCCGGA 1 cut(s) 218
AoxI GGCC 1 cut(s) 433
ApeKI GCWGC 5 cut(s) 197, 200, 203, 324, 476
ApoI RAATTY 1 cut(s) 449
AseI ATTAAT 1 cut(s) 393
Asp700I GAANNNNTTC 1 cut(s) 309
AspS9I GGNCC 4 cut(s) 434, 455, 467, 496
AsuC2I CCSGG 2 cut(s) 9, 494
AsuII TTCGAA 1 cut(s) 517
AvaII GGWCC 3 cut(s) 455, 467, 496
BanII GRGCYC 1 cut(s) 559
BbvI GCAGC 5 cut(s) 184, 187, 190, 311, 488
BcgI CGANNNNNNTGC 2 cut(s) 366, 400
BciT130I CCWGG 1 cut(s) 334
BclI TGATCA 1 cut(s) 483
BcnI CCSGG 2 cut(s) 9, 494
BfaI CTAG 1 cut(s) 636
BglII AGATCT 1 cut(s) 74
BisI GCNGC 5 cut(s) 198, 201, 204, 325, 477
BlsI GCNGC 5 cut(s) 199, 202, 205, 326, 478
Bme1390I CCNGG 3 cut(s) 9, 334, 494
Bme18I GGWCC 3 cut(s) 455, 467, 496
BmgT120I GGNCC 4 cut(s) 434, 455, 467, 496
BmiI GGNNCC 3 cut(s) 468, 498, 558
BmrFI CCNGG 3 cut(s) 9, 334, 494
BmrI ACTGGG 1 cut(s) 562
BmuI ACTGGG 1 cut(s) 562
BplI GAGNNNNNCTC 2 cut(s) 88, 120
Bpu14I TTCGAA 1 cut(s) 517
BpuMI CCSGG 2 cut(s) 9, 494
BsaAI YACGTR 1 cut(s) 413
BsaHI GRCGYC 2 cut(s) 58, 64
BsaJI CCNNGG 2 cut(s) 332, 333
BsaWI WCCGGW 1 cut(s) 218
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse1I ACTGG 2 cut(s) 458, 557
BseAI TCCGGA 1 cut(s) 218
BseBI CCWGG 1 cut(s) 334
BseDI CCNNGG 2 cut(s) 332, 333
BseLI CCNNNNNNNGG 1 cut(s) 464
BseMII CTCAG 2 cut(s) 85, 626
BseNI ACTGG 2 cut(s) 458, 557
BseRI GAGGAG 1 cut(s) 549
BseXI GCAGC 5 cut(s) 184, 187, 190, 311, 488
BshFI GGCC 1 cut(s) 435
BsiSI CCGG 3 cut(s) 9, 219, 494
BslI CCNNNNNNNGG 1 cut(s) 464
BsnI GGCC 1 cut(s) 435
Bsp119I TTCGAA 1 cut(s) 517
Bsp1286I GDGCHC 1 cut(s) 559
Bsp13I TCCGGA 1 cut(s) 218
Bsp143I GATC 4 cut(s) 74, 133, 292, 483
BspANI GGCC 1 cut(s) 435
BspCNI CTCAG 2 cut(s) 84, 625
BspEI TCCGGA 1 cut(s) 218
BspLI GGNNCC 3 cut(s) 468, 498, 558
BspPI GGATC 1 cut(s) 141
BspT104I TTCGAA 1 cut(s) 517
BsrI ACTGG 2 cut(s) 458, 557
BssECI CCNNGG 2 cut(s) 332, 333
BssMI GATC 4 cut(s) 74, 133, 292, 483
BssNI GRCGYC 2 cut(s) 58, 64
Bst2UI CCWGG 1 cut(s) 334
BstACI GRCGYC 2 cut(s) 58, 64
BstBAI YACGTR 1 cut(s) 413
BstBI TTCGAA 1 cut(s) 517
BstDEI CTNAG 3 cut(s) 71, 510, 612
BstKTI GATC 4 cut(s) 77, 136, 295, 486
BstMBI GATC 4 cut(s) 74, 133, 292, 483
BstMWI GCNNNNNNNGC 2 cut(s) 203, 536
BstNI CCWGG 1 cut(s) 334
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 3 cut(s) 7, 332, 492
BstV1I GCAGC 5 cut(s) 184, 187, 190, 311, 488
BstX2I RGATCY 2 cut(s) 74, 133
BstYI RGATCY 2 cut(s) 74, 133
BsuRI GGCC 1 cut(s) 435
BtsIMutI CAGTG 1 cut(s) 564
Cfr13I GGNCC 4 cut(s) 434, 455, 467, 496
CseI GACGC 2 cut(s) 66, 72
Csp6I GTAC 4 cut(s) 102, 149, 414, 490
CviAII CATG 4 cut(s) 85, 314, 438, 481
CviJI RGCY 7 cut(s) 99, 166, 250, 435, 479, 539, 557
CviKI_1 RGCY 7 cut(s) 99, 166, 250, 435, 479, 539, 557
CviQI GTAC 4 cut(s) 102, 149, 414, 490
DdeI CTNAG 3 cut(s) 71, 510, 612
DpnI GATC 4 cut(s) 76, 135, 294, 485
DpnII GATC 4 cut(s) 74, 133, 292, 483
Eco24I GRGCYC 1 cut(s) 559
Eco47I GGWCC 3 cut(s) 455, 467, 496
Eco57I CTGAAG 1 cut(s) 588
EcoRI GAATTC 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 332
EcoT38I GRGCYC 1 cut(s) 559
FaeI CATG 4 cut(s) 88, 317, 441, 484
FaiI YATR 9 cut(s) 86, 162, 186, 315, 439, 482, 532, 627, 664
FatI CATG 4 cut(s) 84, 313, 437, 480
FbaI TGATCA 1 cut(s) 483
Fnu4HI GCNGC 5 cut(s) 198, 201, 204, 325, 477
FriOI GRGCYC 1 cut(s) 559
Fsp4HI GCNGC 5 cut(s) 198, 201, 204, 325, 477
FspBI CTAG 1 cut(s) 636
GluI GCNGC 5 cut(s) 198, 201, 204, 325, 477
HaeIII GGCC 1 cut(s) 435
HapII CCGG 3 cut(s) 9, 219, 494
HgaI GACGC 2 cut(s) 66, 72
Hin1I GRCGYC 2 cut(s) 58, 64
Hin1II CATG 4 cut(s) 88, 317, 441, 484
HinfI GANTC 4 cut(s) 69, 230, 277, 608
HpaII CCGG 3 cut(s) 9, 219, 494
Hpy188I TCNGA 7 cut(s) 74, 79, 96, 108, 265, 388, 598
Hpy188III TCNNGA 3 cut(s) 219, 548, 636
Hpy99I CGWCG 2 cut(s) 60, 66
HpyAV CCTTC 2 cut(s) 191, 409
HpyCH4IV ACGT 3 cut(s) 158, 270, 412
HpyCH4V TGCA 3 cut(s) 141, 327, 377
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 536
HpyF3I CTNAG 3 cut(s) 71, 510, 612
HpySE526I ACGT 3 cut(s) 158, 270, 412
Hsp92I GRCGYC 2 cut(s) 58, 64
Hsp92II CATG 4 cut(s) 88, 317, 441, 484
Kpn2I TCCGGA 1 cut(s) 218
Ksp22I TGATCA 1 cut(s) 483
Kzo9I GATC 4 cut(s) 74, 133, 292, 483
LmnI GCTCC 2 cut(s) 171, 562
Lsp1109I GCAGC 5 cut(s) 184, 187, 190, 311, 488
MaeI CTAG 1 cut(s) 636
MaeII ACGT 3 cut(s) 158, 270, 412
MaeIII GTNAC 1 cut(s) 282
MalI GATC 4 cut(s) 76, 135, 294, 485
MboI GATC 4 cut(s) 74, 133, 292, 483
MfeI CAATTG 1 cut(s) 348
MflI RGATCY 2 cut(s) 74, 133
MhlI GDGCHC 1 cut(s) 559
MluCI AATT 6 cut(s) 222, 348, 394, 443, 449, 519
MlyI GAGTC 3 cut(s) 63, 224, 602
MmeI TCCRAC 1 cut(s) 366
MnlI CCTC 2 cut(s) 295, 570
MroI TCCGGA 1 cut(s) 218
MroXI GAANNNNTTC 1 cut(s) 309
MseI TTAA 2 cut(s) 153, 393
MslI CAYNNNNRTG 1 cut(s) 372
MspI CCGG 3 cut(s) 9, 219, 494
MspR9I CCNGG 3 cut(s) 9, 334, 494
MunI CAATTG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 334
MwoI GCNNNNNNNGC 2 cut(s) 203, 536
NciI CCSGG 2 cut(s) 9, 494
NdeII GATC 4 cut(s) 74, 133, 292, 483
NlaIII CATG 4 cut(s) 88, 317, 441, 484
NlaIV GGNNCC 3 cut(s) 468, 498, 558
NspI RCATGY 1 cut(s) 88
NspV TTCGAA 1 cut(s) 517
PasI CCCWGGG 1 cut(s) 333
PciI ACATGT 1 cut(s) 84
PcsI WCGNNNNNNNCGW 2 cut(s) 58, 64
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 1 cut(s) 277
PkrI GCNGC 5 cut(s) 199, 202, 205, 326, 478
PleI GAGTC 3 cut(s) 63, 224, 602
PpsI GAGTC 3 cut(s) 63, 224, 602
Ppu21I YACGTR 1 cut(s) 413
PscI ACATGT 1 cut(s) 84
PshBI ATTAAT 1 cut(s) 393
Psp6I CCWGG 1 cut(s) 332
PspGI CCWGG 1 cut(s) 332
PspN4I GGNNCC 3 cut(s) 468, 498, 558
PspPI GGNCC 4 cut(s) 434, 455, 467, 496
PsrI GAACNNNNNNTAC 2 cut(s) 94, 126
PsuI RGATCY 2 cut(s) 74, 133
RsaI GTAC 4 cut(s) 103, 150, 415, 491
RsaNI GTAC 4 cut(s) 102, 149, 414, 490
RseI CAYNNNNRTG 1 cut(s) 372
SaqAI TTAA 2 cut(s) 153, 393
SatI GCNGC 5 cut(s) 198, 201, 204, 325, 477
Sau3AI GATC 4 cut(s) 74, 133, 292, 483
Sau96I GGNCC 4 cut(s) 434, 455, 467, 496
SchI GAGTC 3 cut(s) 63, 224, 602
ScrFI CCNGG 3 cut(s) 9, 334, 494
SduI GDGCHC 1 cut(s) 559
SetI ASST 7 cut(s) 101, 161, 168, 252, 273, 415, 516
SfuI TTCGAA 1 cut(s) 517
SinI GGWCC 3 cut(s) 455, 467, 496
SmiMI CAYNNNNRTG 1 cut(s) 372
Sse9I AATT 6 cut(s) 222, 348, 394, 443, 449, 519
SspMI CTAG 1 cut(s) 636
StyD4I CCNGG 3 cut(s) 7, 332, 492
TaiI ACGT 3 cut(s) 161, 273, 415
TaqI TCGA 1 cut(s) 517
TaqII GACCGA 1 cut(s) 443
TasI AATT 6 cut(s) 222, 348, 394, 443, 449, 519
TatI WGTACW 1 cut(s) 101
TfiI GAWTC 1 cut(s) 277
Tru1I TTAA 2 cut(s) 153, 393
Tru9I TTAA 2 cut(s) 153, 393
TscAI CASTG 1 cut(s) 571
TseI GCWGC 5 cut(s) 197, 200, 203, 324, 476
TspDTI ATGAA 3 cut(s) 173, 302, 648
TspGWI ACGGA 1 cut(s) 136
TspRI CASTG 1 cut(s) 571
VpaK11BI GGWCC 3 cut(s) 455, 467, 496
VspI ATTAAT 1 cut(s) 393
XapI RAATTY 1 cut(s) 449
XbaI TCTAGA 1 cut(s) 635
XceI RCATGY 1 cut(s) 88
XcmI CCANNNNNNNNNTGG 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.