Rh7AG006900
ERF Family

RING FYVE PHD zinc finger superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0017306
Physical Location & Seq
Forward (+)
483693 .. 485292
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG006900.1

Sequence Viewer

Length: 666 bp
ATGTTTCCCGGTTTCCCTACCAGATTTCAACTCCACCGAAAGACCCACACCCACACACGCCGACGCCGACGCCGACTCAGATCTGAAAACATGTTAGTTCAGAGCTGTACTCCGAGTTCAGTTGAAGTAAGGAAACAAGATGTTTGCATTTCCGTACTTAAAACGTATAAGCTCCAAAAGATTTCCCTTCATAAAAGTTGTGCTGCTGCTGCTGCTGCTGCTCAAGTTTCCGGAATTGATGACTCTATTCAGTCGTGTAAGCTGTGTGGTAAATCCGAAAACGTATTGAATCTGTTACTTTGTGATCGTTGTGAGGAAGCGTTTCATGTGTCTTGCTGCAAACCCAGGGTGGTTTTGCCGATTGACGAGTGGTTTTGTCGTTCCTGTGCAAAAATGTCGGACTCCAAATCACGTACTATTAGTCAGGGGATTGGCCCATGTCAATTTGAATTCGGTCCAGTATTGGGTCCAATAGCAGCCATGATCAAGTACCCGCACCCATTTATTTCTAAGGTTCGAATCGGCGAAGCATATCAAGCCCAAGTTCCTGACTGGGCTCCGCCCACTGAAGTCAAAACTGACAACGGGGGTTGTTCTGATTGTGCCGACTCTCAGTTGAAATCACATACTGCTTCTAGAAAGAGAAAACAAGAGTTTTCATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2 PHD

Protein Analysis

221

Amino Acids

24.69

Weight (kDa)

9.32

Isoelectric Point (pI)

62.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 86 - 129 1.3e-08 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017306)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18011
malus_domestica MD06G1235600.v1.1
prunus_persica Prupe.5G240400_v2.0.a1
pyrus_communis pycom06g21070
rosa_chinensis RchiOBHm_Chr7g0177591
rosa_laevigata RLG00000005523
rosa_multiflora Rmu_sc0010592.1_g000002
rosa_roxburghii Rroxscaffold_3G00275730
rosa_samantha Rh7AG006900 Rh7BG006900 Rh7CG007400 Rh7DG006900
rosa_wichuraiana Rw7G000590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 230
AciI CCGC 2 cut(s) 494, 560
AcsI RAATTY 1 cut(s) 449
AcuI CTGAAG 1 cut(s) 588
AcyI GRCGYC 2 cut(s) 64, 70
AfaI GTAC 4 cut(s) 109, 156, 415, 491
AfiI CCNNNNNNNGG 1 cut(s) 464
AflIII ACRYGT 1 cut(s) 90
AgsI TTSAA 5 cut(s) 29, 125, 289, 449, 619
AjnI CCWGG 1 cut(s) 344
AluBI AGCT 3 cut(s) 105, 172, 262
AluI AGCT 3 cut(s) 105, 172, 262
Aor13HI TCCGGA 1 cut(s) 230
AoxI GGCC 1 cut(s) 433
ApeKI GCWGC 8 cut(s) 203, 206, 209, 212, 215, 218, 336, 476
ApoI RAATTY 1 cut(s) 449
Asp700I GAANNNNTTC 1 cut(s) 321
AspS9I GGNCC 3 cut(s) 434, 455, 467
AsuC2I CCSGG 1 cut(s) 9
AsuII TTCGAA 1 cut(s) 517
AvaII GGWCC 2 cut(s) 455, 467
BanII GRGCYC 1 cut(s) 559
BbvI GCAGC 8 cut(s) 190, 193, 196, 199, 202, 205, 323, 488
BcgI CGANNNNNNTGC 2 cut(s) 378, 412
BciT130I CCWGG 1 cut(s) 346
BclI TGATCA 1 cut(s) 483
BcnI CCSGG 1 cut(s) 9
BfaI CTAG 1 cut(s) 636
BglII AGATCT 1 cut(s) 80
BisI GCNGC 8 cut(s) 204, 207, 210, 213, 216, 219, 337, 477
BlsI GCNGC 8 cut(s) 205, 208, 211, 214, 217, 220, 338, 478
Bme1390I CCNGG 2 cut(s) 9, 346
Bme18I GGWCC 2 cut(s) 455, 467
BmgT120I GGNCC 3 cut(s) 434, 455, 467
BmiI GGNNCC 2 cut(s) 468, 558
BmrFI CCNGG 2 cut(s) 9, 346
BmrI ACTGGG 1 cut(s) 562
BmuI ACTGGG 1 cut(s) 562
BplI GAGNNNNNCTC 2 cut(s) 94, 126
Bpu14I TTCGAA 1 cut(s) 517
BpuEI CTTGAG 1 cut(s) 207
BpuMI CCSGG 1 cut(s) 9
BsaAI YACGTR 1 cut(s) 413
BsaHI GRCGYC 2 cut(s) 64, 70
BsaJI CCNNGG 2 cut(s) 344, 345
BsaWI WCCGGW 1 cut(s) 230
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse1I ACTGG 2 cut(s) 458, 557
BseAI TCCGGA 1 cut(s) 230
BseBI CCWGG 1 cut(s) 346
BseDI CCNNGG 2 cut(s) 344, 345
BseLI CCNNNNNNNGG 1 cut(s) 464
BseMII CTCAG 2 cut(s) 91, 626
BseNI ACTGG 2 cut(s) 458, 557
BseXI GCAGC 8 cut(s) 190, 193, 196, 199, 202, 205, 323, 488
BshFI GGCC 1 cut(s) 435
BsiSI CCGG 2 cut(s) 9, 231
BslI CCNNNNNNNGG 1 cut(s) 464
BsnI GGCC 1 cut(s) 435
Bsp119I TTCGAA 1 cut(s) 517
Bsp1286I GDGCHC 1 cut(s) 559
Bsp13I TCCGGA 1 cut(s) 230
Bsp143I GATC 3 cut(s) 80, 304, 483
BspACI CCGC 2 cut(s) 494, 560
BspANI GGCC 1 cut(s) 435
BspCNI CTCAG 2 cut(s) 90, 625
BspEI TCCGGA 1 cut(s) 230
BspLI GGNNCC 2 cut(s) 468, 558
BspT104I TTCGAA 1 cut(s) 517
BsrI ACTGG 2 cut(s) 458, 557
BssECI CCNNGG 2 cut(s) 344, 345
BssMI GATC 3 cut(s) 80, 304, 483
BssNI GRCGYC 2 cut(s) 64, 70
Bst2UI CCWGG 1 cut(s) 346
BstACI GRCGYC 2 cut(s) 64, 70
BstBAI YACGTR 1 cut(s) 413
BstBI TTCGAA 1 cut(s) 517
BstDEI CTNAG 3 cut(s) 77, 510, 612
BstKTI GATC 3 cut(s) 83, 307, 486
BstMBI GATC 3 cut(s) 80, 304, 483
BstMWI GCNNNNNNNGC 5 cut(s) 209, 212, 215, 218, 536
BstNI CCWGG 1 cut(s) 346
BstNSI RCATGY 1 cut(s) 94
BstSCI CCNGG 2 cut(s) 7, 344
BstV1I GCAGC 8 cut(s) 190, 193, 196, 199, 202, 205, 323, 488
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BsuRI GGCC 1 cut(s) 435
BtsIMutI CAGTG 1 cut(s) 564
Cfr13I GGNCC 3 cut(s) 434, 455, 467
CseI GACGC 2 cut(s) 72, 78
Csp6I GTAC 4 cut(s) 108, 155, 414, 490
CviAII CATG 4 cut(s) 91, 326, 438, 481
CviJI RGCY 7 cut(s) 105, 172, 262, 435, 479, 539, 557
CviKI_1 RGCY 7 cut(s) 105, 172, 262, 435, 479, 539, 557
CviQI GTAC 4 cut(s) 108, 155, 414, 490
DdeI CTNAG 3 cut(s) 77, 510, 612
DpnI GATC 3 cut(s) 82, 306, 485
DpnII GATC 3 cut(s) 80, 304, 483
EciI GGCGGA 1 cut(s) 549
Eco24I GRGCYC 1 cut(s) 559
Eco47I GGWCC 2 cut(s) 455, 467
Eco57I CTGAAG 1 cut(s) 588
EcoRI GAATTC 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 344
EcoT38I GRGCYC 1 cut(s) 559
FaeI CATG 4 cut(s) 94, 329, 441, 484
FaiI YATR 9 cut(s) 92, 168, 192, 327, 439, 482, 532, 627, 664
FatI CATG 4 cut(s) 90, 325, 437, 480
FauI CCCGC 1 cut(s) 501
FbaI TGATCA 1 cut(s) 483
Fnu4HI GCNGC 8 cut(s) 204, 207, 210, 213, 216, 219, 337, 477
FriOI GRGCYC 1 cut(s) 559
Fsp4HI GCNGC 8 cut(s) 204, 207, 210, 213, 216, 219, 337, 477
FspBI CTAG 1 cut(s) 636
GluI GCNGC 8 cut(s) 204, 207, 210, 213, 216, 219, 337, 477
HaeIII GGCC 1 cut(s) 435
HapII CCGG 2 cut(s) 9, 231
HgaI GACGC 2 cut(s) 72, 78
Hin1I GRCGYC 2 cut(s) 64, 70
Hin1II CATG 4 cut(s) 94, 329, 441, 484
HinfI GANTC 6 cut(s) 75, 242, 289, 401, 519, 608
HpaII CCGG 2 cut(s) 9, 231
Hpy188I TCNGA 7 cut(s) 80, 85, 102, 114, 277, 400, 598
Hpy188III TCNNGA 3 cut(s) 231, 548, 636
Hpy99I CGWCG 2 cut(s) 66, 72
HpyAV CCTTC 1 cut(s) 197
HpyCH4IV ACGT 3 cut(s) 164, 282, 412
HpyCH4V TGCA 3 cut(s) 147, 339, 389
HpyF10VI GCNNNNNNNGC 5 cut(s) 209, 212, 215, 218, 536
HpyF3I CTNAG 3 cut(s) 77, 510, 612
HpySE526I ACGT 3 cut(s) 164, 282, 412
Hsp92I GRCGYC 2 cut(s) 64, 70
Hsp92II CATG 4 cut(s) 94, 329, 441, 484
Kpn2I TCCGGA 1 cut(s) 230
Ksp22I TGATCA 1 cut(s) 483
Kzo9I GATC 3 cut(s) 80, 304, 483
LmnI GCTCC 2 cut(s) 177, 562
Lsp1109I GCAGC 8 cut(s) 190, 193, 196, 199, 202, 205, 323, 488
MaeI CTAG 1 cut(s) 636
MaeII ACGT 3 cut(s) 164, 282, 412
MaeIII GTNAC 1 cut(s) 294
MalI GATC 3 cut(s) 82, 306, 485
MboI GATC 3 cut(s) 80, 304, 483
MflI RGATCY 1 cut(s) 80
MhlI GDGCHC 1 cut(s) 559
MluCI AATT 3 cut(s) 234, 443, 449
MlyI GAGTC 4 cut(s) 69, 236, 395, 602
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 1 cut(s) 307
MroI TCCGGA 1 cut(s) 230
MroXI GAANNNNTTC 1 cut(s) 321
MseI TTAA 1 cut(s) 159
MspI CCGG 2 cut(s) 9, 231
MspR9I CCNGG 2 cut(s) 9, 346
MvaI CCWGG 1 cut(s) 346
MwoI GCNNNNNNNGC 5 cut(s) 209, 212, 215, 218, 536
NciI CCSGG 1 cut(s) 9
NdeII GATC 3 cut(s) 80, 304, 483
NlaIII CATG 4 cut(s) 94, 329, 441, 484
NlaIV GGNNCC 2 cut(s) 468, 558
NspI RCATGY 1 cut(s) 94
NspV TTCGAA 1 cut(s) 517
PasI CCCWGGG 1 cut(s) 345
PciI ACATGT 1 cut(s) 90
PcsI WCGNNNNNNNCGW 2 cut(s) 64, 70
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 2 cut(s) 289, 519
PkrI GCNGC 8 cut(s) 205, 208, 211, 214, 217, 220, 338, 478
PleI GAGTC 4 cut(s) 69, 236, 395, 602
PpsI GAGTC 4 cut(s) 69, 236, 395, 602
Ppu21I YACGTR 1 cut(s) 413
PscI ACATGT 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 344
PspGI CCWGG 1 cut(s) 344
PspN4I GGNNCC 2 cut(s) 468, 558
PspPI GGNCC 3 cut(s) 434, 455, 467
PsrI GAACNNNNNNTAC 2 cut(s) 100, 132
PsuI RGATCY 1 cut(s) 80
RsaI GTAC 4 cut(s) 109, 156, 415, 491
RsaNI GTAC 4 cut(s) 108, 155, 414, 490
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 8 cut(s) 204, 207, 210, 213, 216, 219, 337, 477
Sau3AI GATC 3 cut(s) 80, 304, 483
Sau96I GGNCC 3 cut(s) 434, 455, 467
SchI GAGTC 4 cut(s) 69, 236, 395, 602
ScrFI CCNGG 2 cut(s) 9, 346
SduI GDGCHC 1 cut(s) 559
SetI ASST 7 cut(s) 107, 167, 174, 264, 285, 415, 516
SfuI TTCGAA 1 cut(s) 517
SinI GGWCC 2 cut(s) 455, 467
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
Sse9I AATT 3 cut(s) 234, 443, 449
SsiI CCGC 2 cut(s) 494, 560
SspMI CTAG 1 cut(s) 636
StyD4I CCNGG 2 cut(s) 7, 344
TaiI ACGT 3 cut(s) 167, 285, 415
TaqI TCGA 1 cut(s) 517
TaqII GACCGA 1 cut(s) 443
TasI AATT 3 cut(s) 234, 443, 449
TatI WGTACW 1 cut(s) 107
TfiI GAWTC 2 cut(s) 289, 519
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 1 cut(s) 571
TseI GCWGC 8 cut(s) 203, 206, 209, 212, 215, 218, 336, 476
TspDTI ATGAA 3 cut(s) 179, 314, 648
TspGWI ACGGA 1 cut(s) 142
TspRI CASTG 1 cut(s) 571
VpaK11BI GGWCC 2 cut(s) 455, 467
XapI RAATTY 1 cut(s) 449
XbaI TCTAGA 1 cut(s) 635
XceI RCATGY 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.