Rh7DG006900
ERF Family

RING FYVE PHD zinc finger superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0017306
Physical Location & Seq
Forward (+)
605672 .. 606577
906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG006900.1

Sequence Viewer

Length: 591 bp
ATGTTTCCCGGTTTCCCTACCAGATTTCAACACCACCGAAAGACCCACACCCACACACGCCGACGCCGACGCCGACTCAGATCTGAAAACATGTTAGTTCAGAGCTGTACTCCGAGTTCAGTTGAAGTAAGGAAACAAGATGTTTGCATTTCCGTACTTAAAACGTATAAGCTCCAAAAGATTTCCCTTCATAAAAGTTGTGCTGCTGCTCAAGTTTCCGGAATTGATGACTCTATTCAGTCGTGTAAGCTGTGTGGTAAATCCGAAAACGTATTGAATCTGTTACTTTGTGATCGTTGTGAGGAAGCGTTTCATGTGTCTTGCTGCAAACCCAGGGTGGTTTTGCCAATTGACGAGTGGTTTTGTCATTCCTGTGCAAAAATGACGGACTCCAAATCACGTACTATTAGTCAGGGGATTGGCCCATGTCAATTTGAATTCGGTCCAGTATTGGGTCCAATAGCAGCCATGATCAAGTACCCGGACCCATTTATTTCTAAGGTTCGAATTGGCGAAGCATATCAAGCCCAGGTTCCTGACTGGGCTCCGCCCACTGAAGTCAAAACTGACAACGGGGGTAGTTCTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2 PHD

Protein Analysis

196

Amino Acids

22.0

Weight (kDa)

9.09

Isoelectric Point (pI)

62.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 82 - 125 4.5e-08 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017306)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18011
malus_domestica MD06G1235600.v1.1
prunus_persica Prupe.5G240400_v2.0.a1
pyrus_communis pycom06g21070
rosa_chinensis RchiOBHm_Chr7g0177591
rosa_laevigata RLG00000005523
rosa_multiflora Rmu_sc0010592.1_g000002
rosa_roxburghii Rroxscaffold_3G00275730
rosa_samantha Rh7AG006900 Rh7BG006900 Rh7CG007400 Rh7DG006900
rosa_wichuraiana Rw7G000590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 218
AciI CCGC 1 cut(s) 548
AcsI RAATTY 1 cut(s) 437
AcuI CTGAAG 1 cut(s) 576
AcyI GRCGYC 2 cut(s) 64, 70
AfaI GTAC 4 cut(s) 109, 156, 403, 479
AfiI CCNNNNNNNGG 1 cut(s) 452
AflIII ACRYGT 1 cut(s) 90
AgsI TTSAA 4 cut(s) 29, 125, 277, 437
AjnI CCWGG 2 cut(s) 332, 528
AluBI AGCT 3 cut(s) 105, 172, 250
AluI AGCT 3 cut(s) 105, 172, 250
Aor13HI TCCGGA 1 cut(s) 218
AoxI GGCC 1 cut(s) 421
ApeKI GCWGC 4 cut(s) 203, 206, 324, 464
ApoI RAATTY 1 cut(s) 437
Asp700I GAANNNNTTC 1 cut(s) 309
AspS9I GGNCC 4 cut(s) 422, 443, 455, 484
AsuC2I CCSGG 2 cut(s) 9, 482
AsuII TTCGAA 1 cut(s) 505
AvaII GGWCC 3 cut(s) 443, 455, 484
BanII GRGCYC 1 cut(s) 547
BbvI GCAGC 4 cut(s) 190, 193, 311, 476
BciT130I CCWGG 2 cut(s) 334, 530
BclI TGATCA 1 cut(s) 471
BcnI CCSGG 2 cut(s) 9, 482
BglII AGATCT 1 cut(s) 80
BisI GCNGC 4 cut(s) 204, 207, 325, 465
BlsI GCNGC 4 cut(s) 205, 208, 326, 466
Bme1390I CCNGG 4 cut(s) 9, 334, 482, 530
Bme18I GGWCC 3 cut(s) 443, 455, 484
BmgT120I GGNCC 4 cut(s) 422, 443, 455, 484
BmiI GGNNCC 4 cut(s) 456, 486, 534, 546
BmrFI CCNGG 4 cut(s) 9, 334, 482, 530
BmrI ACTGGG 1 cut(s) 550
BmuI ACTGGG 1 cut(s) 550
BplI GAGNNNNNCTC 2 cut(s) 94, 126
Bpu14I TTCGAA 1 cut(s) 505
BpuEI CTTGAG 1 cut(s) 195
BpuMI CCSGG 2 cut(s) 9, 482
BsaAI YACGTR 1 cut(s) 401
BsaHI GRCGYC 2 cut(s) 64, 70
BsaJI CCNNGG 3 cut(s) 332, 333, 528
BsaWI WCCGGW 1 cut(s) 218
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse1I ACTGG 2 cut(s) 446, 545
BseAI TCCGGA 1 cut(s) 218
BseBI CCWGG 2 cut(s) 334, 530
BseDI CCNNGG 3 cut(s) 332, 333, 528
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMII CTCAG 1 cut(s) 91
BseNI ACTGG 2 cut(s) 446, 545
BseXI GCAGC 4 cut(s) 190, 193, 311, 476
BshFI GGCC 1 cut(s) 423
BsiSI CCGG 3 cut(s) 9, 219, 482
BslI CCNNNNNNNGG 1 cut(s) 452
BsnI GGCC 1 cut(s) 423
Bsp119I TTCGAA 1 cut(s) 505
Bsp1286I GDGCHC 1 cut(s) 547
Bsp13I TCCGGA 1 cut(s) 218
Bsp143I GATC 3 cut(s) 80, 292, 471
BspACI CCGC 1 cut(s) 548
BspANI GGCC 1 cut(s) 423
BspCNI CTCAG 1 cut(s) 90
BspEI TCCGGA 1 cut(s) 218
BspLI GGNNCC 4 cut(s) 456, 486, 534, 546
BspT104I TTCGAA 1 cut(s) 505
BsrI ACTGG 2 cut(s) 446, 545
BssECI CCNNGG 3 cut(s) 332, 333, 528
BssMI GATC 3 cut(s) 80, 292, 471
BssNI GRCGYC 2 cut(s) 64, 70
Bst2UI CCWGG 2 cut(s) 334, 530
BstACI GRCGYC 2 cut(s) 64, 70
BstBAI YACGTR 1 cut(s) 401
BstBI TTCGAA 1 cut(s) 505
BstDEI CTNAG 2 cut(s) 77, 498
BstKTI GATC 3 cut(s) 83, 295, 474
BstMBI GATC 3 cut(s) 80, 292, 471
BstMWI GCNNNNNNNGC 1 cut(s) 524
BstNI CCWGG 2 cut(s) 334, 530
BstNSI RCATGY 1 cut(s) 94
BstSCI CCNGG 4 cut(s) 7, 332, 480, 528
BstV1I GCAGC 4 cut(s) 190, 193, 311, 476
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BsuRI GGCC 1 cut(s) 423
BtsIMutI CAGTG 1 cut(s) 552
Cfr13I GGNCC 4 cut(s) 422, 443, 455, 484
CseI GACGC 2 cut(s) 72, 78
Csp6I GTAC 4 cut(s) 108, 155, 402, 478
CviAII CATG 4 cut(s) 91, 314, 426, 469
CviJI RGCY 7 cut(s) 105, 172, 250, 423, 467, 527, 545
CviKI_1 RGCY 7 cut(s) 105, 172, 250, 423, 467, 527, 545
CviQI GTAC 4 cut(s) 108, 155, 402, 478
DdeI CTNAG 2 cut(s) 77, 498
DpnI GATC 3 cut(s) 82, 294, 473
DpnII GATC 3 cut(s) 80, 292, 471
EciI GGCGGA 1 cut(s) 537
Eco24I GRGCYC 1 cut(s) 547
Eco47I GGWCC 3 cut(s) 443, 455, 484
Eco57I CTGAAG 1 cut(s) 576
EcoRI GAATTC 1 cut(s) 437
EcoRII CCWGG 2 cut(s) 332, 528
EcoT38I GRGCYC 1 cut(s) 547
FaeI CATG 4 cut(s) 94, 317, 429, 472
FaiI YATR 7 cut(s) 92, 168, 192, 315, 427, 470, 520
FatI CATG 4 cut(s) 90, 313, 425, 468
FbaI TGATCA 1 cut(s) 471
Fnu4HI GCNGC 4 cut(s) 204, 207, 325, 465
FriOI GRGCYC 1 cut(s) 547
Fsp4HI GCNGC 4 cut(s) 204, 207, 325, 465
GluI GCNGC 4 cut(s) 204, 207, 325, 465
HaeIII GGCC 1 cut(s) 423
HapII CCGG 3 cut(s) 9, 219, 482
HgaI GACGC 2 cut(s) 72, 78
Hin1I GRCGYC 2 cut(s) 64, 70
Hin1II CATG 4 cut(s) 94, 317, 429, 472
HinfI GANTC 4 cut(s) 75, 230, 277, 389
HpaII CCGG 3 cut(s) 9, 219, 482
Hpy188I TCNGA 5 cut(s) 80, 85, 102, 114, 265
Hpy188III TCNNGA 2 cut(s) 219, 536
Hpy99I CGWCG 2 cut(s) 66, 72
HpyAV CCTTC 1 cut(s) 197
HpyCH4IV ACGT 3 cut(s) 164, 270, 400
HpyCH4V TGCA 3 cut(s) 147, 327, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 524
HpyF3I CTNAG 2 cut(s) 77, 498
HpySE526I ACGT 3 cut(s) 164, 270, 400
Hsp92I GRCGYC 2 cut(s) 64, 70
Hsp92II CATG 4 cut(s) 94, 317, 429, 472
Kpn2I TCCGGA 1 cut(s) 218
Ksp22I TGATCA 1 cut(s) 471
Kzo9I GATC 3 cut(s) 80, 292, 471
LmnI GCTCC 2 cut(s) 177, 550
Lsp1109I GCAGC 4 cut(s) 190, 193, 311, 476
MaeII ACGT 3 cut(s) 164, 270, 400
MaeIII GTNAC 1 cut(s) 282
MalI GATC 3 cut(s) 82, 294, 473
MboI GATC 3 cut(s) 80, 292, 471
MfeI CAATTG 1 cut(s) 348
MflI RGATCY 1 cut(s) 80
MhlI GDGCHC 1 cut(s) 547
MluCI AATT 5 cut(s) 222, 348, 431, 437, 507
MlyI GAGTC 3 cut(s) 69, 224, 383
MnlI CCTC 1 cut(s) 295
MroI TCCGGA 1 cut(s) 218
MroXI GAANNNNTTC 1 cut(s) 309
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 1 cut(s) 372
MspI CCGG 3 cut(s) 9, 219, 482
MspR9I CCNGG 4 cut(s) 9, 334, 482, 530
MunI CAATTG 1 cut(s) 348
MvaI CCWGG 2 cut(s) 334, 530
MwoI GCNNNNNNNGC 1 cut(s) 524
NciI CCSGG 2 cut(s) 9, 482
NdeII GATC 3 cut(s) 80, 292, 471
NlaIII CATG 4 cut(s) 94, 317, 429, 472
NlaIV GGNNCC 4 cut(s) 456, 486, 534, 546
NspI RCATGY 1 cut(s) 94
NspV TTCGAA 1 cut(s) 505
PasI CCCWGGG 1 cut(s) 333
PciI ACATGT 1 cut(s) 90
PcsI WCGNNNNNNNCGW 2 cut(s) 64, 70
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 1 cut(s) 277
PkrI GCNGC 4 cut(s) 205, 208, 326, 466
PleI GAGTC 3 cut(s) 69, 224, 383
PpsI GAGTC 3 cut(s) 69, 224, 383
Ppu21I YACGTR 1 cut(s) 401
PscI ACATGT 1 cut(s) 90
Psp6I CCWGG 2 cut(s) 332, 528
PspGI CCWGG 2 cut(s) 332, 528
PspN4I GGNNCC 4 cut(s) 456, 486, 534, 546
PspPI GGNCC 4 cut(s) 422, 443, 455, 484
PsrI GAACNNNNNNTAC 2 cut(s) 100, 132
PsuI RGATCY 1 cut(s) 80
RsaI GTAC 4 cut(s) 109, 156, 403, 479
RsaNI GTAC 4 cut(s) 108, 155, 402, 478
RseI CAYNNNNRTG 1 cut(s) 372
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 4 cut(s) 204, 207, 325, 465
Sau3AI GATC 3 cut(s) 80, 292, 471
Sau96I GGNCC 4 cut(s) 422, 443, 455, 484
SchI GAGTC 3 cut(s) 69, 224, 383
ScrFI CCNGG 4 cut(s) 9, 334, 482, 530
SduI GDGCHC 1 cut(s) 547
SetI ASST 8 cut(s) 107, 167, 174, 252, 273, 403, 504, 534
SfuI TTCGAA 1 cut(s) 505
SinI GGWCC 3 cut(s) 443, 455, 484
SmiMI CAYNNNNRTG 1 cut(s) 372
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
Sse9I AATT 5 cut(s) 222, 348, 431, 437, 507
SsiI CCGC 1 cut(s) 548
StyD4I CCNGG 4 cut(s) 7, 332, 480, 528
TaiI ACGT 3 cut(s) 167, 273, 403
TaqI TCGA 1 cut(s) 505
TaqII GACCGA 1 cut(s) 431
TasI AATT 5 cut(s) 222, 348, 431, 437, 507
TatI WGTACW 1 cut(s) 107
TfiI GAWTC 1 cut(s) 277
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 1 cut(s) 559
TseI GCWGC 4 cut(s) 203, 206, 324, 464
TspDTI ATGAA 2 cut(s) 179, 302
TspGWI ACGGA 2 cut(s) 142, 401
TspRI CASTG 1 cut(s) 559
VpaK11BI GGWCC 3 cut(s) 443, 455, 484
XapI RAATTY 1 cut(s) 437
XceI RCATGY 1 cut(s) 94
XcmI CCANNNNNNNNNTGG 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.