Rh7BG006900
ERF Family

RING FYVE PHD zinc finger superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0017306
Physical Location & Seq
Forward (+)
425951 .. 429108
3158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG006900.1

Sequence Viewer

Length: 564 bp
ATGTTAGTTCAGAGCTGTATTCCGAGTTCAGTTGAAGTAAGGAAACAAGATCTTTGCATTTCCGTACTTAAAACGTATAAGCTCCAAAAGATTTCCCTTCATAAAAGTTGTGCTGCTGCTGCTGCTGCTCAAGTTTCCGGAATCGATGACTCTATTCAGTCGTGTAAGCTGTGTGGTAAATCCGAAAACGTATTGAATCTGTTACTTTGTGATCGTTGTGAGGAAGCGTTTCATGTGTCTTGCTGCAAACCCAGGGTGGTTTTGCCAATTGACGAGTGGTTTTGTCATTCCTGTGCAAAAATTGATCCCAAAATGTCGGAGATTAATTCCTTCTTCTCCAAATCACGTACTATTAGTCAGGGGATTGGCCCATGTCAATTTGAATTCGGTCCAGTATTGGGTCCAATAGCAGCCATGATCAAGTACCCGGACCCATTTATTTCTAAGGTTCGAATTGGCGAAGCATATCAAGCCCAAGTTCCTGACTGGGCTCCGCCCACTGAAGTCAAAACCGACAACGGGGGTTGTTCTGATTGTGCCGACTCTCAGGTGATAATCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2 PHD

Protein Analysis

187

Amino Acids

20.42

Weight (kDa)

6.28

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 55 - 98 4.1e-08 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017306)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18011
malus_domestica MD06G1235600.v1.1
prunus_persica Prupe.5G240400_v2.0.a1
pyrus_communis pycom06g21070
rosa_chinensis RchiOBHm_Chr7g0177591
rosa_laevigata RLG00000005523
rosa_multiflora Rmu_sc0010592.1_g000002
rosa_roxburghii Rroxscaffold_3G00275730
rosa_samantha Rh7AG006900 Rh7BG006900 Rh7CG007400 Rh7DG006900
rosa_wichuraiana Rw7G000590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 137
AciI CCGC 1 cut(s) 494
AclWI GGATC 1 cut(s) 299
AcsI RAATTY 1 cut(s) 383
AcuI CTGAAG 1 cut(s) 522
AfaI GTAC 3 cut(s) 66, 349, 425
AfiI CCNNNNNNNGG 2 cut(s) 398, 519
AgsI TTSAA 3 cut(s) 35, 196, 383
AjnI CCWGG 1 cut(s) 251
AluBI AGCT 3 cut(s) 15, 82, 169
AluI AGCT 3 cut(s) 15, 82, 169
AlwI GGATC 1 cut(s) 299
Aor13HI TCCGGA 1 cut(s) 137
AoxI GGCC 1 cut(s) 367
ApeKI GCWGC 7 cut(s) 113, 116, 119, 122, 125, 243, 410
ApoI RAATTY 1 cut(s) 383
AseI ATTAAT 1 cut(s) 324
Asp700I GAANNNNTTC 1 cut(s) 228
AspS9I GGNCC 4 cut(s) 368, 389, 401, 430
AsuC2I CCSGG 1 cut(s) 428
AsuHPI GGTGA 1 cut(s) 562
AsuII TTCGAA 1 cut(s) 451
AvaII GGWCC 3 cut(s) 389, 401, 430
BanII GRGCYC 1 cut(s) 493
BbvI GCAGC 7 cut(s) 100, 103, 106, 109, 112, 230, 422
BciT130I CCWGG 1 cut(s) 253
BclI TGATCA 1 cut(s) 417
BcnI CCSGG 1 cut(s) 428
BglII AGATCT 1 cut(s) 49
BisI GCNGC 7 cut(s) 114, 117, 120, 123, 126, 244, 411
BlsI GCNGC 7 cut(s) 115, 118, 121, 124, 127, 245, 412
Bme1390I CCNGG 2 cut(s) 253, 428
Bme18I GGWCC 3 cut(s) 389, 401, 430
BmgT120I GGNCC 4 cut(s) 368, 389, 401, 430
BmiI GGNNCC 3 cut(s) 402, 432, 492
BmrFI CCNGG 2 cut(s) 253, 428
BmrI ACTGGG 1 cut(s) 496
BmuI ACTGGG 1 cut(s) 496
Bpu14I TTCGAA 1 cut(s) 451
BpuEI CTTGAG 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 428
Bsa29I ATCGAT 1 cut(s) 144
BsaAI YACGTR 1 cut(s) 347
BsaJI CCNNGG 2 cut(s) 251, 252
BsaWI WCCGGW 1 cut(s) 137
Bsc4I CCNNNNNNNGG 2 cut(s) 398, 519
Bse1I ACTGG 2 cut(s) 392, 491
BseAI TCCGGA 1 cut(s) 137
BseBI CCWGG 1 cut(s) 253
BseCI ATCGAT 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 251, 252
BseLI CCNNNNNNNGG 2 cut(s) 398, 519
BseMII CTCAG 1 cut(s) 560
BseNI ACTGG 2 cut(s) 392, 491
BseXI GCAGC 7 cut(s) 100, 103, 106, 109, 112, 230, 422
BshFI GGCC 1 cut(s) 369
BshVI ATCGAT 1 cut(s) 144
BsiSI CCGG 2 cut(s) 138, 428
BslI CCNNNNNNNGG 2 cut(s) 398, 519
BsnI GGCC 1 cut(s) 369
Bsp119I TTCGAA 1 cut(s) 451
Bsp1286I GDGCHC 1 cut(s) 493
Bsp13I TCCGGA 1 cut(s) 137
Bsp143I GATC 4 cut(s) 49, 211, 304, 417
BspACI CCGC 1 cut(s) 494
BspANI GGCC 1 cut(s) 369
BspCNI CTCAG 1 cut(s) 559
BspDI ATCGAT 1 cut(s) 144
BspEI TCCGGA 1 cut(s) 137
BspLI GGNNCC 3 cut(s) 402, 432, 492
BspPI GGATC 1 cut(s) 299
BspT104I TTCGAA 1 cut(s) 451
BsrI ACTGG 2 cut(s) 392, 491
BssECI CCNNGG 2 cut(s) 251, 252
BssMI GATC 4 cut(s) 49, 211, 304, 417
Bst2UI CCWGG 1 cut(s) 253
BstBAI YACGTR 1 cut(s) 347
BstBI TTCGAA 1 cut(s) 451
BstDEI CTNAG 2 cut(s) 444, 546
BstKTI GATC 4 cut(s) 52, 214, 307, 420
BstMBI GATC 4 cut(s) 49, 211, 304, 417
BstMWI GCNNNNNNNGC 4 cut(s) 119, 122, 125, 470
BstNI CCWGG 1 cut(s) 253
BstSCI CCNGG 2 cut(s) 251, 426
BstV1I GCAGC 7 cut(s) 100, 103, 106, 109, 112, 230, 422
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
Bsu15I ATCGAT 1 cut(s) 144
BsuRI GGCC 1 cut(s) 369
BsuTUI ATCGAT 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 498
Cfr13I GGNCC 4 cut(s) 368, 389, 401, 430
ClaI ATCGAT 1 cut(s) 144
Csp6I GTAC 3 cut(s) 65, 348, 424
CviAII CATG 3 cut(s) 233, 372, 415
CviJI RGCY 7 cut(s) 15, 82, 169, 369, 413, 473, 491
CviKI_1 RGCY 7 cut(s) 15, 82, 169, 369, 413, 473, 491
CviQI GTAC 3 cut(s) 65, 348, 424
DdeI CTNAG 2 cut(s) 444, 546
DpnI GATC 4 cut(s) 51, 213, 306, 419
DpnII GATC 4 cut(s) 49, 211, 304, 417
EciI GGCGGA 1 cut(s) 483
Eco24I GRGCYC 1 cut(s) 493
Eco47I GGWCC 3 cut(s) 389, 401, 430
Eco57I CTGAAG 1 cut(s) 522
EcoRI GAATTC 1 cut(s) 383
EcoRII CCWGG 1 cut(s) 251
EcoT38I GRGCYC 1 cut(s) 493
FaeI CATG 3 cut(s) 236, 375, 418
FaiI YATR 6 cut(s) 78, 102, 234, 373, 416, 466
FatI CATG 3 cut(s) 232, 371, 414
FbaI TGATCA 1 cut(s) 417
Fnu4HI GCNGC 7 cut(s) 114, 117, 120, 123, 126, 244, 411
FriOI GRGCYC 1 cut(s) 493
Fsp4HI GCNGC 7 cut(s) 114, 117, 120, 123, 126, 244, 411
GluI GCNGC 7 cut(s) 114, 117, 120, 123, 126, 244, 411
HaeIII GGCC 1 cut(s) 369
HapII CCGG 2 cut(s) 138, 428
Hin1II CATG 3 cut(s) 236, 375, 418
HinfI GANTC 4 cut(s) 141, 149, 196, 542
HpaII CCGG 2 cut(s) 138, 428
HphI GGTGA 1 cut(s) 562
Hpy188I TCNGA 5 cut(s) 12, 24, 184, 319, 532
Hpy188III TCNNGA 2 cut(s) 138, 482
HpyAV CCTTC 2 cut(s) 107, 340
HpyCH4IV ACGT 3 cut(s) 74, 189, 346
HpyCH4V TGCA 3 cut(s) 57, 246, 296
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 122, 125, 470
HpyF3I CTNAG 2 cut(s) 444, 546
HpySE526I ACGT 3 cut(s) 74, 189, 346
Hsp92II CATG 3 cut(s) 236, 375, 418
Kpn2I TCCGGA 1 cut(s) 137
Ksp22I TGATCA 1 cut(s) 417
Kzo9I GATC 4 cut(s) 49, 211, 304, 417
LmnI GCTCC 2 cut(s) 87, 496
Lsp1109I GCAGC 7 cut(s) 100, 103, 106, 109, 112, 230, 422
MaeII ACGT 3 cut(s) 74, 189, 346
MaeIII GTNAC 1 cut(s) 201
MalI GATC 4 cut(s) 51, 213, 306, 419
MboI GATC 4 cut(s) 49, 211, 304, 417
MboII GAAGA 1 cut(s) 325
MfeI CAATTG 1 cut(s) 267
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 493
MluCI AATT 6 cut(s) 267, 300, 325, 377, 383, 453
MlyI GAGTC 2 cut(s) 143, 536
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 1 cut(s) 214
MroI TCCGGA 1 cut(s) 137
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 3 cut(s) 69, 324, 562
MslI CAYNNNNRTG 1 cut(s) 291
MspI CCGG 2 cut(s) 138, 428
MspR9I CCNGG 2 cut(s) 253, 428
MunI CAATTG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 253
MwoI GCNNNNNNNGC 4 cut(s) 119, 122, 125, 470
NciI CCSGG 1 cut(s) 428
NdeII GATC 4 cut(s) 49, 211, 304, 417
NlaIII CATG 3 cut(s) 236, 375, 418
NlaIV GGNNCC 3 cut(s) 402, 432, 492
NspV TTCGAA 1 cut(s) 451
PasI CCCWGGG 1 cut(s) 252
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 2 cut(s) 141, 196
PkrI GCNGC 7 cut(s) 115, 118, 121, 124, 127, 245, 412
PleI GAGTC 2 cut(s) 143, 536
PpsI GAGTC 2 cut(s) 143, 536
Ppu21I YACGTR 1 cut(s) 347
PshBI ATTAAT 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 251
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 3 cut(s) 402, 432, 492
PspPI GGNCC 4 cut(s) 368, 389, 401, 430
PsrI GAACNNNNNNTAC 2 cut(s) 10, 42
PsuI RGATCY 1 cut(s) 49
RsaI GTAC 3 cut(s) 66, 349, 425
RsaNI GTAC 3 cut(s) 65, 348, 424
RseI CAYNNNNRTG 1 cut(s) 291
SaqAI TTAA 3 cut(s) 69, 324, 562
SatI GCNGC 7 cut(s) 114, 117, 120, 123, 126, 244, 411
Sau3AI GATC 4 cut(s) 49, 211, 304, 417
Sau96I GGNCC 4 cut(s) 368, 389, 401, 430
SchI GAGTC 2 cut(s) 143, 536
ScrFI CCNGG 2 cut(s) 253, 428
SduI GDGCHC 1 cut(s) 493
SetI ASST 8 cut(s) 17, 77, 84, 171, 192, 349, 450, 552
SfuI TTCGAA 1 cut(s) 451
SinI GGWCC 3 cut(s) 389, 401, 430
SmiMI CAYNNNNRTG 1 cut(s) 291
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
Sse9I AATT 6 cut(s) 267, 300, 325, 377, 383, 453
SsiI CCGC 1 cut(s) 494
StyD4I CCNGG 2 cut(s) 251, 426
TaiI ACGT 3 cut(s) 77, 192, 349
TaqI TCGA 2 cut(s) 144, 451
TaqII GACCGA 1 cut(s) 377
TasI AATT 6 cut(s) 267, 300, 325, 377, 383, 453
TfiI GAWTC 2 cut(s) 141, 196
Tru1I TTAA 3 cut(s) 69, 324, 562
Tru9I TTAA 3 cut(s) 69, 324, 562
TscAI CASTG 1 cut(s) 505
TseI GCWGC 7 cut(s) 113, 116, 119, 122, 125, 243, 410
TspDTI ATGAA 2 cut(s) 89, 221
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 1 cut(s) 505
VpaK11BI GGWCC 3 cut(s) 389, 401, 430
VspI ATTAAT 1 cut(s) 324
XapI RAATTY 1 cut(s) 383
XcmI CCANNNNNNNNNTGG 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.