MD06G1235600.v1.1
ERF Family

RING FYVE PHD zinc finger superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0017306
Physical Location & Seq
Reverse (-)
36674915 .. 36677095
2181 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1235600.v1.1.491

Sequence Viewer

Length: 516 bp
ATGGTACTTAAGAGCACTATCCCGGGTTCAGTTGAAGCGGGCAAAAACGACGTTTGCATCCCAATACTTCAAAGTTACGAGATCAAGAATGTTCCCCTTAGAAAAACTCGTTCCCCTCAAGTTTTGGGAATTGACATTAGCCTTGGTGGAGATGTTCAGTCGTGTAAGCGTTGTCGTCGTTCTGAAAGTATATCGAATATGCTAATTTGTGATCGTTGCGAAGAAGCGTTTCATGTAAAATGCTGCAAGCCCCGAGTGGTTTTTCCAGTTGACGATTGGTTTTGCGGTTCCTGTTCCAAAATTATGTCCGAAAAGTTGCAGAACGATTCTTTCCTGAAATCTCCTAGTAGCATGGGTTTGAGGTTTGGCTTAACGTGTAAATTTGAGCTGGGTCCAATAGCAGTTATGTTGAAGTACCCGGAGCCATTTACGTCTAAAGTTCGGATTGGTGAAGCCTATCAAGTAGAAGTTCCTGACTGGTGCCATCAAATTCCTAAGTATGACTCCACTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2 PHD

Protein Analysis

172

Amino Acids

19.19

Weight (kDa)

8.47

Isoelectric Point (pI)

60.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 55 - 98 1.8e-07 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017306)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18011
malus_domestica MD06G1235600.v1.1
prunus_persica Prupe.5G240400_v2.0.a1
pyrus_communis pycom06g21070
rosa_chinensis RchiOBHm_Chr7g0177591
rosa_laevigata RLG00000005523
rosa_multiflora Rmu_sc0010592.1_g000002
rosa_roxburghii Rroxscaffold_3G00275730
rosa_samantha Rh7AG006900 Rh7BG006900 Rh7CG007400 Rh7DG006900
rosa_wichuraiana Rw7G000590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 509
AccB1I GGYRCC 1 cut(s) 480
AciI CCGC 2 cut(s) 38, 285
AcsI RAATTY 2 cut(s) 380, 489
AfaI GTAC 2 cut(s) 6, 416
AflII CTTAAG 1 cut(s) 8
AflIII ACRYGT 1 cut(s) 374
AgsI TTSAA 3 cut(s) 35, 71, 412
AluBI AGCT 1 cut(s) 388
AluI AGCT 1 cut(s) 388
Alw21I GWGCWC 1 cut(s) 17
Ama87I CYCGRG 2 cut(s) 22, 252
ApeKI GCWGC 1 cut(s) 243
ApoI RAATTY 2 cut(s) 380, 489
Asp700I GAANNNNTTC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 392
AsuC2I CCSGG 3 cut(s) 23, 24, 419
AsuHPI GGTGA 1 cut(s) 461
AvaI CYCGRG 2 cut(s) 22, 252
AvaII GGWCC 1 cut(s) 392
BanI GGYRCC 1 cut(s) 480
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 230
BccI CCATC 1 cut(s) 492
BcnI CCSGG 3 cut(s) 23, 24, 419
BfaI CTAG 1 cut(s) 345
BfrI CTTAAG 1 cut(s) 8
BisI GCNGC 1 cut(s) 244
BlsI GCNGC 1 cut(s) 245
Bme1390I CCNGG 3 cut(s) 23, 24, 419
Bme18I GGWCC 1 cut(s) 392
BmeT110I CYCGRG 2 cut(s) 22, 252
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 4 cut(s) 289, 393, 423, 482
BmrFI CCNGG 3 cut(s) 23, 24, 419
BmsI GCATC 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 102
BpuMI CCSGG 3 cut(s) 23, 24, 419
BsaJI CCNNGG 2 cut(s) 22, 142
Bse1I ACTGG 2 cut(s) 266, 482
BseDI CCNNGG 2 cut(s) 22, 142
BseGI GGATG 1 cut(s) 57
BseNI ACTGG 2 cut(s) 266, 482
BseXI GCAGC 1 cut(s) 230
BseYI CCCAGC 1 cut(s) 388
BshNI GGYRCC 1 cut(s) 480
BsiHKAI GWGCWC 1 cut(s) 17
BsiHKCI CYCGRG 2 cut(s) 22, 252
BsiSI CCGG 2 cut(s) 23, 419
BsoBI CYCGRG 2 cut(s) 22, 252
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 2 cut(s) 81, 211
BspACI CCGC 2 cut(s) 38, 285
BspLI GGNNCC 4 cut(s) 289, 393, 423, 482
BspT107I GGYRCC 1 cut(s) 480
BspTI CTTAAG 1 cut(s) 8
BsrI ACTGG 2 cut(s) 266, 482
BssECI CCNNGG 2 cut(s) 22, 142
BssMI GATC 2 cut(s) 81, 211
BssT1I CCWWGG 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 511
BstAFI CTTAAG 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 40, 248
BstDEI CTNAG 2 cut(s) 98, 495
BstF5I GGATG 1 cut(s) 57
BstKTI GATC 2 cut(s) 84, 214
BstMBI GATC 2 cut(s) 81, 211
BstSCI CCNGG 3 cut(s) 21, 22, 417
BstV1I GCAGC 1 cut(s) 230
BtsCI GGATG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 507
Cac8I GCNNGC 2 cut(s) 40, 248
Cfr13I GGNCC 1 cut(s) 392
Cfr9I CCCGGG 1 cut(s) 22
Csp6I GTAC 2 cut(s) 5, 415
CviAII CATG 2 cut(s) 233, 352
CviJI RGCY 6 cut(s) 141, 250, 369, 388, 424, 455
CviKI_1 RGCY 6 cut(s) 141, 250, 369, 388, 424, 455
CviQI GTAC 2 cut(s) 5, 415
DdeI CTNAG 2 cut(s) 98, 495
DpnI GATC 2 cut(s) 83, 213
DpnII GATC 2 cut(s) 81, 211
DrdI GACNNNNNNGTC 1 cut(s) 509
DseDI GACNNNNNNGTC 1 cut(s) 509
Eco130I CCWWGG 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 392
Eco88I CYCGRG 2 cut(s) 22, 252
EcoT14I CCWWGG 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 2 cut(s) 236, 355
FaiI YATR 7 cut(s) 191, 200, 234, 305, 353, 407, 501
FatI CATG 2 cut(s) 232, 351
FauI CCCGC 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 244
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 244
FspBI CTAG 1 cut(s) 345
GluI GCNGC 1 cut(s) 244
GsaI CCCAGC 1 cut(s) 392
HapII CCGG 2 cut(s) 23, 419
Hin1II CATG 2 cut(s) 236, 355
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 2 cut(s) 326, 503
HpaII CCGG 2 cut(s) 23, 419
HphI GGTGA 1 cut(s) 461
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 4 cut(s) 184, 310, 444, 515
Hpy188III TCNNGA 3 cut(s) 85, 334, 473
Hpy8I GTNNAC 1 cut(s) 271
Hpy99I CGWCG 2 cut(s) 53, 180
HpyCH4III ACNGT 1 cut(s) 511
HpyCH4IV ACGT 3 cut(s) 51, 374, 431
HpyCH4V TGCA 3 cut(s) 57, 246, 319
HpyF3I CTNAG 2 cut(s) 98, 495
HpySE526I ACGT 3 cut(s) 51, 374, 431
Hsp92II CATG 2 cut(s) 236, 355
Kzo9I GATC 2 cut(s) 81, 211
LmnI GCTCC 1 cut(s) 421
LpnPI CCDG 8 cut(s) 36, 279, 304, 347, 374, 432, 463, 486
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 1 cut(s) 66
MaeI CTAG 1 cut(s) 345
MaeII ACGT 3 cut(s) 51, 374, 431
MaeIII GTNAC 1 cut(s) 74
MalI GATC 2 cut(s) 83, 213
MboI GATC 2 cut(s) 81, 211
MboII GAAGA 1 cut(s) 233
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 5 cut(s) 129, 204, 300, 380, 489
MlyI GAGTC 1 cut(s) 497
MnlI CCTC 2 cut(s) 126, 354
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 2 cut(s) 9, 371
MspCI CTTAAG 1 cut(s) 8
MspI CCGG 2 cut(s) 23, 419
MspR9I CCNGG 3 cut(s) 23, 24, 419
NciI CCSGG 3 cut(s) 23, 24, 419
NdeII GATC 2 cut(s) 81, 211
NlaIII CATG 2 cut(s) 236, 355
NlaIV GGNNCC 4 cut(s) 289, 393, 423, 482
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 326
PkrI GCNGC 1 cut(s) 245
PleI GAGTC 1 cut(s) 497
PpsI GAGTC 1 cut(s) 497
PspFI CCCAGC 1 cut(s) 388
PspN4I GGNNCC 4 cut(s) 289, 393, 423, 482
PspPI GGNCC 1 cut(s) 392
RsaI GTAC 2 cut(s) 6, 416
RsaNI GTAC 2 cut(s) 5, 415
SaqAI TTAA 2 cut(s) 9, 371
SatI GCNGC 1 cut(s) 244
Sau3AI GATC 2 cut(s) 81, 211
Sau96I GGNCC 1 cut(s) 392
SchI GAGTC 1 cut(s) 497
ScrFI CCNGG 3 cut(s) 23, 24, 419
SduI GDGCHC 1 cut(s) 17
SetI ASST 5 cut(s) 54, 365, 377, 390, 434
SfaNI GCATC 1 cut(s) 66
SinI GGWCC 1 cut(s) 392
SmaI CCCGGG 1 cut(s) 24
SmlI CTYRAG 2 cut(s) 8, 117
SmoI CTYRAG 2 cut(s) 8, 117
Sse9I AATT 5 cut(s) 129, 204, 300, 380, 489
SsiI CCGC 2 cut(s) 38, 285
SspMI CTAG 1 cut(s) 345
StyD4I CCNGG 3 cut(s) 21, 22, 417
StyI CCWWGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 511
TaiI ACGT 3 cut(s) 54, 377, 434
TaqI TCGA 1 cut(s) 194
TasI AATT 5 cut(s) 129, 204, 300, 380, 489
TfiI GAWTC 1 cut(s) 326
Tru1I TTAA 2 cut(s) 9, 371
Tru9I TTAA 2 cut(s) 9, 371
TscAI CASTG 1 cut(s) 514
TseI GCWGC 1 cut(s) 243
TspDTI ATGAA 1 cut(s) 221
TspMI CCCGGG 1 cut(s) 22
TspRI CASTG 1 cut(s) 514
Vha464I CTTAAG 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 392
XapI RAATTY 2 cut(s) 380, 489
XcmI CCANNNNNNNNNTGG 1 cut(s) 273
XmaI CCCGGG 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.