FvH4_5g18690

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013265
Physical Location & Seq
Forward (+)
10746337 .. 10749729
3393 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18690.t1

Sequence Viewer

Length: 2187 bp
ATGGTAGTCGGCGCACAACCAAAGCCGCAGCCACAATCCCAACCCCAACCCCAGCAGCCGCAGCAACCGGAGCCTTCGCCTGAAGAGGAGGCCCTCAAGAGGAACACCGACTGCGTCTACTTCCTCGCCTCCCCCGTCTCCTGCAAAAAGGGGAGTGAATGTGAATATCGCCACAGTGAACATGCTCTGTACAATCCTAGGGATTGCTGGTTCTGGTTGAATGGGAATTGCTTAAATTTGAAATGCTCGTTTCGGCATCCACCTCTTGATGGCTTGCTTGAAAGCCCAGCAGCAAGTTCAGCTGGACCTTCGTTGCCGATACCACATACTGCAACGATGCCTGCAACCAATGCTACTTTTAACTCGAGTAAACAAGCAGTTCCCTGCATCTTCTTTCAAAGGGGGTTTTGTTCAAAAGCTGATAAATGCCCTTTCTCGCATGGACCAAATTCTTTTACTACTAGTAAAGTTCCACAGGCCCCAGCAGCTACCCATGGTACAGAACCTTCAAGTCATAAGAAGGTTTTTGGTGGCATTCAAAAGTGCAATCAAGAGATGAAGATTCCTCAGGTAAGTGCCTCAAAGATTGTCGGAGTGCCTCCTCAGTCCAAACCTGCTCCTAAGGTTGTGACTGCTCCACCAAGAAATGGAGTTGGCATTGAGAGGAATGTGATACCAACTAGAGACTTTGATGATGAGGCTCTTAGATACAAGGCAAGAAGTGGTTTCCCTGCAATGAATGGAGACTCTACAGGTCAGGCCAATCATTATCTTCAGGCTCATGTATCAGAAAACCATGGTTTCCAAATTGGGAAGGATGTTGATGAGCATTTGAGGGAGTCCTCTCCTGGATTTGATGTTCTTGTAGATGATGAGCTTGGAGATTCTGACTACTACCATGGTGAGGAACAGTTCGGAAGAACAAGAGTTCATGATGGAAGGAACTTGAATTCTATGAATGAGTATGATTTGGACCGTCCTGCGGATTACAATCCAATAGCTGATGGTGATCGAGAAAGGTTTCATGACCCACGAGGCTATGACCCTTATGATCAGATGCAAGGGAGATATGCTTGGGACCAGCACAGGGCTTCATCTGAGAGACTGCTAGTTGGCCCTGCTCATTCAGAGAGGAGGGGTTATCGTAAATCTGATAGCCCAGATCACATTGATGGGTCAGACCTGCGACATCGTTTGTCCAAACATAGGAGGGGAAATGGTCTGAGATCAGTTGTCAGCAATGAGTACGATGGCCATGTTGAGGAGCGAAAAAGCCGTCCTCGTAGGGATCCACAGCAATTGCCCTCACATGAGGGCTCCCTCAGCAGTCGTCTTCGTGGCAGAATAAAGCTTCCAGGTGGATCTTCTCCGGTCAATGGTAGTGACTTGCGCCAAGAGAGGGAAGGCAGAGGAAGACATCGTGACAGAAGTCGTGATAGAAGTCGCGATAGGTTGTCACCCAGAAGGCCTCAAAGTATGTCCCACCAAGGAAGGCTTCGAGACAGAATACAAGGAAGGGTGCAAGAAGACTCTAATAATAATGAGCCGAGAAACATTGGGGCTCCTCGTATGAGGAGAGAGGTACTGGATGAAAGAAGCTCCGAGTTTTCTCGTCCAAAACGTCTTTCAGAGCCAAAGCCAAATAATGTAAACATGGAGAATAATCAGCAATCTGAAGGTGATCTCTCATTTGAAGGGCCAAAGCCTCTTAGCGAGATTCTGAAGAGGAAGAGAGAAGCTGAAGCAGCTGCAGCTTCTGGGAGCAGGAAAAGATCTTCTATTAATAAACAAGGCAACAGTGAGAGAGAAGGCGCAGCGAGCAATCCAGGTGGCTCTGGGACAGGAGATGTTACAACGACACTTAACAGTCAGTCCCCTGTGGCCAAAGAAGAGAGCAAGTCTGCAACCACTGATACAGTTGGAACTGAAAATGAAAAGAACGATTTGGCTCCTGGCCAGTCTTCCCAAGGGCAGCAAGAGACTGAAGAAGGTGCGATATATGATGAAACAGCTGAGTATCACGAGCTTGAGGGCGAAGATCAGAGGGAAGGAGAATATGATTACGAGCAAGGAGAGGATGGCGAATACACTTATGAAGAAGGTGAAAACGCAGATGGTGAAGAGGAATACCTGGAGGAGGAAGACGGGGATGACTTTGCTAAGAAGATTGGCGTCATGTTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH_2 zf-CCCH_3

Protein Analysis

729

Amino Acids

81.24

Weight (kDa)

5.76

Isoelectric Point (pI)

64.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_3 PF15663 33 - 88 4e-11 Zinc-finger containing family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02160
fragaria_vesca FvH4_5g18690 FvH4_5g18690
malus_domestica MD16G1008200.v1.1
prunus_persica Prupe.1G342700_v2.0.a1
pyrus_communis pycom13g00840 pycom16g00800 pycom16g00810
rosa_chinensis RchiOBHm_Chr7g0176801
rosa_laevigata RLG00000005584
rosa_multiflora Rmu_sc0005162.1_g000002
rosa_roxburghii Rroxscaffold_3G00276400
rosa_rugosa Rorug06G0401100
rosa_samantha Rh7AG000100 Rh7BG000300 Rh7CG000100 Rh7DG000400
rosa_wichuraiana Rw7G000010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 622, 1191
AccB7I CCANNNNNTGG 1 cut(s) 647
AccI GTMKAC 1 cut(s) 117
AccII CGCG 1 cut(s) 1446
AciI CCGC 3 cut(s) 26, 59, 983
AclWI GGATC 3 cut(s) 1283, 1296, 1369
AcoI YGGCCR 3 cut(s) 1252, 1881, 1954
AcsI RAATTY 3 cut(s) 235, 448, 949
AcuI CTGAAG 6 cut(s) 102, 758, 1695, 1742, 1761, 2004
AcyI GRCGYC 1 cut(s) 2172
AfaI GTAC 4 cut(s) 191, 499, 1247, 1584
AgsI TTSAA 9 cut(s) 220, 241, 281, 398, 414, 510, 539, 949, 1694
AhlI ACTAGT 1 cut(s) 461
AjnI CCWGG 5 cut(s) 847, 1354, 1825, 1951, 2130
AjuI GAANNNNNNNTTGG 4 cut(s) 1479, 1511, 1609, 1641
AloI GAACNNNNNNTCC 4 cut(s) 194, 226, 843, 875
Alw26I GTCTC 6 cut(s) 142, 678, 738, 1096, 1494, 1973
AlwI GGATC 3 cut(s) 1283, 1296, 1369
AlwNI CAGNNNCTG 1 cut(s) 1757
Ama87I CYCGRG 1 cut(s) 364
AoxI GGCC 9 cut(s) 90, 477, 759, 1114, 1252, 1466, 1697, 1881, 1954
ApoI RAATTY 3 cut(s) 235, 448, 949
ArsI GACNNNNNNTTYG 2 cut(s) 1261, 1293
AseI ATTAAT 1 cut(s) 1782
Asp700I GAANNNNTTC 1 cut(s) 1020
AspA2I CCTAGG 1 cut(s) 197
AspLEI GCGC 3 cut(s) 14, 1392, 1814
AspS9I GGNCC 8 cut(s) 91, 305, 443, 478, 973, 1078, 1115, 1697
AsuHPI GGTGA 6 cut(s) 914, 1019, 1449, 1691, 2114, 2129
AvaI CYCGRG 1 cut(s) 364
AvaII GGWCC 4 cut(s) 305, 443, 973, 1078
AvrII CCTAGG 1 cut(s) 197
AxyI CCTNAGG 2 cut(s) 567, 621
BalI TGGCCA 3 cut(s) 1254, 1883, 1956
BamHI GGATCC 1 cut(s) 1288
BanII GRGCYC 2 cut(s) 1319, 1564
BarI GAAGNNNNNNTAC 2 cut(s) 490, 522
BauI CACGAG 2 cut(s) 1032, 2021
BbsI GAAGAC 5 cut(s) 1325, 1420, 1533, 1953, 2148
BbvCI CCTCAGC 1 cut(s) 1322
BccI CCATC 7 cut(s) 263, 929, 998, 1166, 1244, 2072, 2108
BceAI ACGGC 1 cut(s) 1260
BciT130I CCWGG 5 cut(s) 849, 1356, 1827, 1953, 2132
BclI TGATCA 1 cut(s) 1051
BcoDI GTCTC 6 cut(s) 142, 678, 738, 1096, 1494, 1973
BcuI ACTAGT 1 cut(s) 461
BfaI CTAG 4 cut(s) 198, 462, 681, 1109
BfmI CTRYAG 2 cut(s) 750, 1749
BfuAI ACCTGC 2 cut(s) 622, 1191
BglII AGATCT 1 cut(s) 1772
BlnI CCTAGG 1 cut(s) 197
Bme1390I CCNGG 5 cut(s) 849, 1356, 1827, 1953, 2132
Bme18I GGWCC 4 cut(s) 305, 443, 973, 1078
BmeT110I CYCGRG 1 cut(s) 364
BmgT120I GGNCC 8 cut(s) 91, 305, 443, 478, 973, 1078, 1115, 1697
BmiI GGNNCC 7 cut(s) 72, 480, 1079, 1290, 1318, 1563, 1950
BmrFI CCNGG 5 cut(s) 849, 1356, 1827, 1953, 2132
BmsI GCATC 4 cut(s) 265, 327, 396, 1047
BoxI GACNNNNGTC 1 cut(s) 1428
BpiI GAAGAC 5 cut(s) 1325, 1420, 1533, 1953, 2148
BpmI CTGGAG 1 cut(s) 2153
Bpu10I CCTNAGC 1 cut(s) 1322
BpuEI CTTGAG 2 cut(s) 80, 2048
BsaBI GATNNNNATC 2 cut(s) 990, 1008
BsaHI GRCGYC 1 cut(s) 2172
BsaJI CCNNGG 6 cut(s) 197, 493, 796, 898, 1486, 1966
BsaWI WCCGGW 2 cut(s) 67, 1369
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bse1I ACTGG 2 cut(s) 1590, 1957
Bse21I CCTNAGG 2 cut(s) 567, 621
Bse3DI GCAATG 2 cut(s) 741, 1246
Bse8I GATNNNNATC 2 cut(s) 990, 1008
BseBI CCWGG 5 cut(s) 849, 1356, 1827, 1953, 2132
BseDI CCNNGG 6 cut(s) 197, 493, 796, 898, 1486, 1966
BseGI GGATG 5 cut(s) 256, 823, 1594, 2083, 2155
BseJI GATNNNNATC 2 cut(s) 990, 1008
BseMI GCAATG 2 cut(s) 741, 1246
BseMII CTCAG 6 cut(s) 581, 617, 1089, 1214, 1336, 2004
BseNI ACTGG 2 cut(s) 1590, 1957
BseRI GAGGAG 7 cut(s) 101, 591, 1147, 1277, 1554, 1588, 2150
BseYI CCCAGC 3 cut(s) 51, 286, 481
Bsh1236I CGCG 1 cut(s) 1446
BshFI GGCC 9 cut(s) 92, 479, 761, 1116, 1254, 1468, 1699, 1883, 1956
BsiHKCI CYCGRG 1 cut(s) 364
BsiSI CCGG 2 cut(s) 68, 1370
BslFI GGGAC 4 cut(s) 1091, 1465, 1852, 1858
BsmAI GTCTC 6 cut(s) 142, 678, 738, 1096, 1494, 1973
BsmBI CGTCTC 1 cut(s) 142
BsmFI GGGAC 4 cut(s) 1091, 1465, 1852, 1858
BsmI GAATGC 1 cut(s) 534
BsnI GGCC 9 cut(s) 92, 479, 761, 1116, 1254, 1468, 1699, 1883, 1956
BsoBI CYCGRG 1 cut(s) 364
Bsp1286I GDGCHC 2 cut(s) 1319, 1564
Bsp1407I TGTACA 1 cut(s) 189
Bsp143I GATC 9 cut(s) 1009, 1051, 1162, 1226, 1288, 1361, 1681, 1772, 2038
Bsp19I CCATGG 3 cut(s) 493, 796, 898
Bsp68I TCGCGA 1 cut(s) 1446
BspACI CCGC 3 cut(s) 26, 59, 983
BspANI GGCC 9 cut(s) 92, 479, 761, 1116, 1254, 1468, 1699, 1883, 1956
BspCNI CTCAG 6 cut(s) 580, 616, 1090, 1215, 1335, 2005
BspFNI CGCG 1 cut(s) 1446
BspHI TCATGA 2 cut(s) 931, 1024
BspLI GGNNCC 7 cut(s) 72, 480, 1079, 1290, 1318, 1563, 1950
BspMAI CTGCAG 1 cut(s) 1753
BspMI ACCTGC 2 cut(s) 622, 1191
BspPI GGATC 3 cut(s) 1283, 1296, 1369
BsrDI GCAATG 2 cut(s) 741, 1246
BsrGI TGTACA 1 cut(s) 189
BsrI ACTGG 2 cut(s) 1590, 1957
BssECI CCNNGG 6 cut(s) 197, 493, 796, 898, 1486, 1966
BssMI GATC 9 cut(s) 1009, 1051, 1162, 1226, 1288, 1361, 1681, 1772, 2038
BssNI GRCGYC 1 cut(s) 2172
BssSI CACGAG 2 cut(s) 1032, 2021
BssT1I CCWWGG 6 cut(s) 197, 493, 796, 898, 1486, 1966
Bst2BI CACGAG 2 cut(s) 1032, 2021
Bst2UI CCWGG 5 cut(s) 849, 1356, 1827, 1953, 2132
Bst4CI ACNGT 6 cut(s) 176, 912, 977, 1799, 1868, 1918
Bst6I CTCTTC 5 cut(s) 78, 1718, 1724, 1884, 2115
BstACI GRCGYC 1 cut(s) 2172
BstAPI GCANNNNNTGC 1 cut(s) 350
BstAUI TGTACA 1 cut(s) 189
BstC8I GCNNGC 3 cut(s) 275, 342, 1819
BstDSI CCRYGG 3 cut(s) 493, 796, 898
BstENI CCTNNNNNAGG 1 cut(s) 2135
BstF5I GGATG 5 cut(s) 256, 823, 1594, 2083, 2155
BstFNI CGCG 1 cut(s) 1446
BstHHI GCGC 3 cut(s) 14, 1392, 1814
BstKTI GATC 9 cut(s) 1012, 1054, 1165, 1229, 1291, 1364, 1684, 1775, 2041
BstMAI GTCTC 6 cut(s) 142, 678, 738, 1096, 1494, 1973
BstMBI GATC 9 cut(s) 1009, 1051, 1162, 1226, 1288, 1361, 1681, 1772, 2038
BstMWI GCNNNNNNNGC 9 cut(s) 61, 70, 299, 350, 485, 1323, 1745, 1751, 1818
BstNI CCWGG 5 cut(s) 849, 1356, 1827, 1953, 2132
BstNSI RCATGY 1 cut(s) 185
BstPAI GACNNNNGTC 1 cut(s) 1428
BstSCI CCNGG 5 cut(s) 847, 1354, 1825, 1951, 2130
BstSFI CTRYAG 2 cut(s) 750, 1749
BstUI CGCG 1 cut(s) 1446
BstV2I GAAGAC 5 cut(s) 1325, 1420, 1533, 1953, 2148
BstX2I RGATCY 3 cut(s) 1288, 1361, 1772
BstYI RGATCY 3 cut(s) 1288, 1361, 1772
Bsu36I CCTNAGG 2 cut(s) 567, 621
BsuRI GGCC 9 cut(s) 92, 479, 761, 1116, 1254, 1468, 1699, 1883, 1956
BtgI CCRYGG 3 cut(s) 493, 796, 898
BtsCI GGATG 5 cut(s) 256, 823, 1594, 2083, 2155
BtsIMutI CAGTG 3 cut(s) 181, 1804, 1908
BtuMI TCGCGA 1 cut(s) 1446
BveI ACCTGC 2 cut(s) 622, 1191
Cac8I GCNNGC 3 cut(s) 275, 342, 1819
CaiI CAGNNNCTG 1 cut(s) 1757
CciI TCATGA 2 cut(s) 931, 1024
CfoI GCGC 3 cut(s) 14, 1392, 1814
Cfr13I GGNCC 8 cut(s) 91, 305, 443, 478, 973, 1078, 1115, 1697
CseI GACGC 2 cut(s) 103, 2161
Csp6I GTAC 4 cut(s) 190, 498, 1246, 1583
CspCI CAANNNNNGTGG 4 cut(s) 1281, 1316, 1810, 1845
CviQI GTAC 4 cut(s) 190, 498, 1246, 1583
DpnI GATC 9 cut(s) 1011, 1053, 1164, 1228, 1290, 1363, 1683, 1774, 2040
DpnII GATC 9 cut(s) 1009, 1051, 1162, 1226, 1288, 1361, 1681, 1772, 2038
EaeI YGGCCR 3 cut(s) 1252, 1881, 1954
Eam1104I CTCTTC 5 cut(s) 78, 1718, 1724, 1884, 2115
EarI CTCTTC 5 cut(s) 78, 1718, 1724, 1884, 2115
Eco130I CCWWGG 6 cut(s) 197, 493, 796, 898, 1486, 1966
Eco147I AGGCCT 1 cut(s) 1468
Eco24I GRGCYC 2 cut(s) 1319, 1564
Eco47I GGWCC 4 cut(s) 305, 443, 973, 1078
Eco57I CTGAAG 6 cut(s) 102, 758, 1695, 1742, 1761, 2004
Eco81I CCTNAGG 2 cut(s) 567, 621
Eco88I CYCGRG 1 cut(s) 364
EcoNI CCTNNNNNAGG 1 cut(s) 2135
EcoO109I RGGNCCY 2 cut(s) 91, 478
EcoRI GAATTC 1 cut(s) 949
EcoRII CCWGG 5 cut(s) 847, 1354, 1825, 1951, 2130
EcoT14I CCWWGG 6 cut(s) 197, 493, 796, 898, 1486, 1966
EcoT38I GRGCYC 2 cut(s) 1319, 1564
ErhI CCWWGG 6 cut(s) 197, 493, 796, 898, 1486, 1966
Esp3I CGTCTC 1 cut(s) 142
FalI AAGNNNNNCTT 2 cut(s) 1479, 1511
FaqI GGGAC 4 cut(s) 1091, 1465, 1852, 1858
FbaI TGATCA 1 cut(s) 1051
FblI GTMKAC 1 cut(s) 117
FokI GGATG 5 cut(s) 243, 830, 1601, 2090, 2162
FriOI GRGCYC 2 cut(s) 1319, 1564
FspBI CTAG 4 cut(s) 198, 462, 681, 1109
GlaI GCGC 3 cut(s) 13, 1391, 1813
GsaI CCCAGC 3 cut(s) 55, 290, 485
GsuI CTGGAG 1 cut(s) 2153
HaeIII GGCC 9 cut(s) 92, 479, 761, 1116, 1254, 1468, 1699, 1883, 1956
HapII CCGG 2 cut(s) 68, 1370
HgaI GACGC 2 cut(s) 103, 2161
HhaI GCGC 3 cut(s) 14, 1392, 1814
Hin1I GRCGYC 1 cut(s) 2172
Hin6I GCGC 3 cut(s) 12, 1390, 1812
HinP1I GCGC 3 cut(s) 12, 1390, 1812
HindIII AAGCTT 1 cut(s) 1349
HinfI GANTC 6 cut(s) 562, 746, 839, 884, 1529, 1717
HpaII CCGG 2 cut(s) 68, 1370
HphI GGTGA 6 cut(s) 914, 1019, 1449, 1691, 2114, 2129
Hpy166II GTNNAC 4 cut(s) 118, 179, 371, 1651
Hpy8I GTNNAC 4 cut(s) 118, 179, 371, 1651
HpyCH4III ACNGT 6 cut(s) 176, 912, 977, 1799, 1868, 1918
HpyCH4IV ACGT 1 cut(s) 1621
HpyF10VI GCNNNNNNNGC 9 cut(s) 61, 70, 299, 350, 485, 1323, 1745, 1751, 1818
HpySE526I ACGT 1 cut(s) 1621
Hsp92I GRCGYC 1 cut(s) 2172
HspAI GCGC 3 cut(s) 12, 1390, 1812
Ksp22I TGATCA 1 cut(s) 1051
Kzo9I GATC 9 cut(s) 1009, 1051, 1162, 1226, 1288, 1361, 1681, 1772, 2038
LmnI GCTCC 9 cut(s) 70, 622, 640, 1264, 1322, 1567, 1604, 1761, 1954
LweI GCATC 4 cut(s) 265, 327, 396, 1047
MaeI CTAG 4 cut(s) 198, 462, 681, 1109
MaeII ACGT 1 cut(s) 1621
MaeIII GTNAC 5 cut(s) 628, 1382, 1421, 1455, 1849
MalI GATC 9 cut(s) 1011, 1053, 1164, 1228, 1290, 1363, 1683, 1774, 2040
MboI GATC 9 cut(s) 1009, 1051, 1162, 1226, 1288, 1361, 1681, 1772, 2038
MfeI CAATTG 1 cut(s) 1298
MflI RGATCY 3 cut(s) 1288, 1361, 1772
MhlI GDGCHC 2 cut(s) 1319, 1564
MlsI TGGCCA 3 cut(s) 1254, 1883, 1956
MluCI AATT 6 cut(s) 226, 235, 448, 807, 949, 1298
MluNI TGGCCA 3 cut(s) 1254, 1883, 1956
MlyI GAGTC 3 cut(s) 740, 848, 1523
MmeI TCCRAC 2 cut(s) 571, 1900
Mox20I TGGCCA 3 cut(s) 1254, 1883, 1956
MroXI GAANNNNTTC 1 cut(s) 1020
MscI TGGCCA 3 cut(s) 1254, 1883, 1956
MseI TTAA 5 cut(s) 233, 360, 1782, 1863, 2185
MslI CAYNNNNRTG 1 cut(s) 1170
Msp20I TGGCCA 3 cut(s) 1254, 1883, 1956
MspA1I CMGCKG 3 cut(s) 302, 1748, 2012
MspI CCGG 2 cut(s) 68, 1370
MspR9I CCNGG 5 cut(s) 849, 1356, 1827, 1953, 2132
MunI CAATTG 1 cut(s) 1298
Mva1269I GAATGC 1 cut(s) 534
MvaI CCWGG 5 cut(s) 849, 1356, 1827, 1953, 2132
MvnI CGCG 1 cut(s) 1446
MwoI GCNNNNNNNGC 9 cut(s) 61, 70, 299, 350, 485, 1323, 1745, 1751, 1818
NcoI CCATGG 3 cut(s) 493, 796, 898
NdeII GATC 9 cut(s) 1009, 1051, 1162, 1226, 1288, 1361, 1681, 1772, 2038
NlaIV GGNNCC 7 cut(s) 72, 480, 1079, 1290, 1318, 1563, 1950
NmeAIII GCCGAG 1 cut(s) 1572
NmuCI GTSAC 4 cut(s) 628, 1382, 1421, 1455
NruI TCGCGA 1 cut(s) 1446
NspI RCATGY 1 cut(s) 185
PaeR7I CTCGAG 1 cut(s) 364
PagI TCATGA 2 cut(s) 931, 1024
PceI AGGCCT 1 cut(s) 1468
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 1618
PctI GAATGC 1 cut(s) 534
PdmI GAANNNNTTC 1 cut(s) 1020
PfeI GAWTC 3 cut(s) 562, 884, 1717
PflFI GACNNNGTC 1 cut(s) 113
PflMI CCANNNNNTGG 1 cut(s) 647
PfoI TCCNGGA 1 cut(s) 847
PleI GAGTC 3 cut(s) 740, 847, 1523
PpsI GAGTC 3 cut(s) 740, 847, 1523
PshAI GACNNNNGTC 1 cut(s) 1428
PshBI ATTAAT 1 cut(s) 1782
Psp6I CCWGG 5 cut(s) 847, 1354, 1825, 1951, 2130
PspFI CCCAGC 3 cut(s) 51, 286, 481
PspGI CCWGG 5 cut(s) 847, 1354, 1825, 1951, 2130
PspN4I GGNNCC 7 cut(s) 72, 480, 1079, 1290, 1318, 1563, 1950
PspPI GGNCC 8 cut(s) 91, 305, 443, 478, 973, 1078, 1115, 1697
PspXI VCTCGAGB 1 cut(s) 364
PstI CTGCAG 1 cut(s) 1753
PstNI CAGNNNCTG 1 cut(s) 1757
PsuI RGATCY 3 cut(s) 1288, 1361, 1772
PsyI GACNNNGTC 1 cut(s) 113
PvuII CAGCTG 3 cut(s) 302, 1748, 2012
RruI TCGCGA 1 cut(s) 1446
RsaI GTAC 4 cut(s) 191, 499, 1247, 1584
RsaNI GTAC 4 cut(s) 190, 498, 1246, 1583
RseI CAYNNNNRTG 1 cut(s) 1170
SaqAI TTAA 5 cut(s) 233, 360, 1782, 1863, 2185
Sau3AI GATC 9 cut(s) 1009, 1051, 1162, 1226, 1288, 1361, 1681, 1772, 2038
Sau96I GGNCC 8 cut(s) 91, 305, 443, 478, 973, 1078, 1115, 1697
SchI GAGTC 3 cut(s) 740, 848, 1523
ScrFI CCNGG 5 cut(s) 849, 1356, 1827, 1953, 2132
SduI GDGCHC 2 cut(s) 1319, 1564
SfaNI GCATC 4 cut(s) 265, 327, 396, 1047
SfcI CTRYAG 2 cut(s) 750, 1749
Sfr274I CTCGAG 1 cut(s) 364
SinI GGWCC 4 cut(s) 305, 443, 973, 1078
SlaI CTCGAG 1 cut(s) 364
SmiMI CAYNNNNRTG 1 cut(s) 1170
SmlI CTYRAG 3 cut(s) 95, 364, 2027
SmoI CTYRAG 3 cut(s) 95, 364, 2027
SpeI ACTAGT 1 cut(s) 461
Sse9I AATT 6 cut(s) 226, 235, 448, 807, 949, 1298
SseBI AGGCCT 1 cut(s) 1468
SsiI CCGC 3 cut(s) 26, 59, 983
SspMI CTAG 4 cut(s) 198, 462, 681, 1109
StuI AGGCCT 1 cut(s) 1468
StyD4I CCNGG 5 cut(s) 847, 1354, 1825, 1951, 2130
StyI CCWWGG 6 cut(s) 197, 493, 796, 898, 1486, 1966
TaaI ACNGT 6 cut(s) 176, 912, 977, 1799, 1868, 1918
TaiI ACGT 1 cut(s) 1624
TaqI TCGA 3 cut(s) 365, 1012, 1498
TasI AATT 6 cut(s) 226, 235, 448, 807, 949, 1298
TatI WGTACW 1 cut(s) 189
TauI GCSGC 2 cut(s) 28, 61
TfiI GAWTC 3 cut(s) 562, 884, 1717
Tru1I TTAA 5 cut(s) 233, 360, 1782, 1863, 2185
Tru9I TTAA 5 cut(s) 233, 360, 1782, 1863, 2185
TscAI CASTG 3 cut(s) 181, 1804, 1915
TseFI GTSAC 4 cut(s) 628, 1382, 1421, 1455
Tsp45I GTSAC 4 cut(s) 628, 1382, 1421, 1455
TspRI CASTG 3 cut(s) 181, 1804, 1915
Tth111I GACNNNGTC 1 cut(s) 113
Van91I CCANNNNNTGG 1 cut(s) 647
VpaK11BI GGWCC 4 cut(s) 305, 443, 973, 1078
VspI ATTAAT 1 cut(s) 1782
XagI CCTNNNNNAGG 1 cut(s) 2135
XapI RAATTY 3 cut(s) 235, 448, 949
XceI RCATGY 1 cut(s) 185
XhoI CTCGAG 1 cut(s) 364
XmaJI CCTAGG 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 117
XmnI GAANNNNTTC 1 cut(s) 1020
XspI CTAG 4 cut(s) 198, 462, 681, 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.