pycom16g00800

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0013265
Physical Location & Seq
Forward (+)
479605 .. 481782
2178 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g00800.1

Sequence Viewer

Length: 1269 bp
ATGGTAGTCGGCGCACAACCGCAGCCGCAACCACAACAGCAGCAGCAGCAGCTACAACAGAAGCCGCCGCAGCAACCGGAAACTTCGGCTGAAGAGGAGGCCTTGAAGAGGAACACCGATTGCGTCTACTTTCTCGCCTCGCCTCTTACCTGCAAAAAGGGAAGTGAATGTGAATACAGACACAGTGAGTATGCCCGGGTCAACCCCAGGGATTGCTGGTACTGGTTGAATGGCAGTTGCTTGAATTTGAAATGCGCGTTTAGGCATCCACCGCTTGATGGCTTGTTAGGAAGCCCGGCAGCAAATTCTGCTGGACCTTCTTTGCCTCTATCACATCCTGTGGCTACGCCTACAACGCCTGCAACTCATGCTGCTTATAACCCAAGTAAACAAGCAGTCCCCTGTATTTTCTTCCAAAAGGGGCAATGTTTAAAGGGTGACAGATGTGCCTTCTCTCATGGACCAAATCCTATGGCTAGTAGTAAAGTTCTACAGACACCAGCTGCTGCCCACGGTACTGAGCCTTCAGGTCTTAAGAAGGCTTTCGGTGGCCTTCAAAAGTGCACTCAAGAGTTGAAGGTTCCCAAGGTAAGTGCCACGAAGTCTGTTGGAGTGCCTCCTGAAGCCAAACCTGCTCCAAAAATTCCGACTGCTCCAATTAGAAATGGAGTTAGCATTGAGAGGAATGTACCATCAACTAAAGCATTGGATGATGAGGCTCTCAGATACAAGGCAACAAGTGTTCCGCCTGTTATCAACGGAGGCTCTACAAGTCAGGCCAATCATTTGCTTCAGGCTCATGTTTCAGACTATCATGGTTTTCAAAATGGGAAGGATGCTGATGAGCATTTGAGGGAGTCTTCTCCTGGATTTGATGTTCTTGTAGATGATGAGCACGGAGATTCTGATTACTACCACGGCGAAGAACGGTTTGGCAGAACAAGAGGTCATGAGGGAAGGAACTTGAATTCTGTGAACGAATATGATTTGGACCGTCCCGTTGATTACACATCAATGGCTGATGTCGATCAAGAAAGGTTTTGTGACCCATATGACCCTTATGATCGCATGCAAGGGCAGTACGCATGGGACCAGCATAGGGTTTCATCTGAGAGACAATTAGTGGGTCCTGCTCGTCTTGAGAGGAGGGGTTATCGCAAATCTGAGAGTCCGGAGAACATTGATGAGTTAGATCTGCGACATCGTTTATCCAAGCATAGGAGGGTAAACGGTCTGATCGATCCATTGTCAGCCATGATTATGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH_2 zf-CCCH_3

Protein Analysis

423

Amino Acids

46.75

Weight (kDa)

6.76

Isoelectric Point (pI)

51.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_3 PF15663 36 - 90 2.1e-10 Zinc-finger containing family
zf_CCCH_4 PF18345 135 - 153 9.2e-06 Zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02160
fragaria_vesca FvH4_5g18690 FvH4_5g18690
malus_domestica MD16G1008200.v1.1
prunus_persica Prupe.1G342700_v2.0.a1
pyrus_communis pycom13g00840 pycom16g00800 pycom16g00810
rosa_chinensis RchiOBHm_Chr7g0176801
rosa_laevigata RLG00000005584
rosa_multiflora Rmu_sc0005162.1_g000002
rosa_roxburghii Rroxscaffold_3G00276400
rosa_rugosa Rorug06G0401100
rosa_samantha Rh7AG000100 Rh7BG000300 Rh7CG000100 Rh7DG000400
rosa_wichuraiana Rw7G000010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 378
Acc36I ACCTGC 2 cut(s) 158, 640
AccI GTMKAC 1 cut(s) 126
AccII CGCG 1 cut(s) 257
AccIII TCCGGA 1 cut(s) 1171
AciI CCGC 6 cut(s) 20, 26, 65, 68, 272, 746
AclWI GGATC 1 cut(s) 1235
AcsI RAATTY 4 cut(s) 244, 304, 642, 967
AcuI CTGAAG 4 cut(s) 111, 510, 642, 776
AfaI GTAC 4 cut(s) 221, 517, 690, 1082
AfiI CCNNNNNNNGG 4 cut(s) 108, 278, 1099, 1218
AflII CTTAAG 1 cut(s) 533
AgsI TTSAA 8 cut(s) 106, 229, 244, 250, 557, 577, 824, 967
AjnI CCWGG 2 cut(s) 206, 865
AjuI GAANNNNNNNTTGG 2 cut(s) 915, 947
AloI GAACNNNNNNTCC 2 cut(s) 861, 893
AluBI AGCT 2 cut(s) 52, 503
AluI AGCT 2 cut(s) 52, 503
Alw21I GWGCWC 2 cut(s) 566, 897
Alw26I GTCTC 1 cut(s) 1108
Alw44I GTGCAC 1 cut(s) 562
AlwI GGATC 1 cut(s) 1235
AlwNI CAGNNNCTG 1 cut(s) 506
Ama87I CYCGRG 1 cut(s) 195
Aor13HI TCCGGA 1 cut(s) 1171
AoxI GGCC 3 cut(s) 99, 550, 777
ApaLI GTGCAC 1 cut(s) 562
ApoI RAATTY 4 cut(s) 244, 304, 642, 967
Asp700I GAANNNNTTC 1 cut(s) 542
AspLEI GCGC 2 cut(s) 14, 257
AspS9I GGNCC 5 cut(s) 314, 461, 991, 1090, 1127
AsuC2I CCSGG 3 cut(s) 196, 197, 296
AsuHPI GGTGA 1 cut(s) 449
AvaI CYCGRG 1 cut(s) 195
AvaII GGWCC 5 cut(s) 314, 461, 991, 1090, 1127
BaeGI GKGCMC 1 cut(s) 566
BarI GAAGNNNNNNTAC 2 cut(s) 508, 540
BbsI GAAGAC 1 cut(s) 852
Bbv12I GWGCWC 2 cut(s) 566, 897
BccI CCATC 2 cut(s) 272, 700
BceAI ACGGC 1 cut(s) 934
BciT130I CCWGG 2 cut(s) 208, 867
BcnI CCSGG 3 cut(s) 196, 197, 296
BcoDI GTCTC 1 cut(s) 1108
BfaI CTAG 1 cut(s) 477
BfmI CTRYAG 1 cut(s) 491
BfrI CTTAAG 1 cut(s) 533
BfuAI ACCTGC 2 cut(s) 158, 640
BglII AGATCT 1 cut(s) 1192
Bme1390I CCNGG 5 cut(s) 196, 197, 208, 296, 867
Bme18I GGWCC 5 cut(s) 314, 461, 991, 1090, 1127
BmeT110I CYCGRG 1 cut(s) 195
BmgT120I GGNCC 5 cut(s) 314, 461, 991, 1090, 1127
BmiI GGNNCC 3 cut(s) 582, 1091, 1128
BmrFI CCNGG 5 cut(s) 196, 197, 208, 296, 867
BmsI GCATC 2 cut(s) 274, 826
BpiI GAAGAC 1 cut(s) 852
BpuEI CTTGAG 2 cut(s) 552, 1160
BpuMI CCSGG 3 cut(s) 196, 197, 296
Bsa29I ATCGAT 1 cut(s) 1239
BsaBI GATNNNNATC 1 cut(s) 1026
BsaJI CCNNGG 6 cut(s) 195, 206, 207, 511, 585, 916
BsaWI WCCGGW 2 cut(s) 76, 1171
Bsc4I CCNNNNNNNGG 4 cut(s) 108, 278, 1099, 1218
Bse1I ACTGG 1 cut(s) 227
Bse3DI GCAATG 1 cut(s) 431
Bse8I GATNNNNATC 1 cut(s) 1026
BseAI TCCGGA 1 cut(s) 1171
BseBI CCWGG 2 cut(s) 208, 867
BseCI ATCGAT 1 cut(s) 1239
BseDI CCNNGG 6 cut(s) 195, 206, 207, 511, 585, 916
BseGI GGATG 4 cut(s) 265, 334, 715, 841
BseJI GATNNNNATC 1 cut(s) 1026
BseLI CCNNNNNNNGG 4 cut(s) 108, 278, 1099, 1218
BseMI GCAATG 1 cut(s) 431
BseMII CTCAG 4 cut(s) 510, 736, 1101, 1155
BseNI ACTGG 1 cut(s) 227
BseRI GAGGAG 2 cut(s) 110, 1159
BseSI GKGCMC 1 cut(s) 566
Bsh1236I CGCG 1 cut(s) 257
BshFI GGCC 3 cut(s) 101, 552, 779
BshVI ATCGAT 1 cut(s) 1239
BsiHKAI GWGCWC 2 cut(s) 566, 897
BsiHKCI CYCGRG 1 cut(s) 195
BsiSI CCGG 4 cut(s) 77, 196, 296, 1172
BslFI GGGAC 3 cut(s) 383, 981, 1103
BslI CCNNNNNNNGG 4 cut(s) 108, 278, 1099, 1218
BsmAI GTCTC 1 cut(s) 1108
BsmFI GGGAC 3 cut(s) 383, 981, 1103
BsnI GGCC 3 cut(s) 101, 552, 779
BsoBI CYCGRG 1 cut(s) 195
Bsp1286I GDGCHC 2 cut(s) 566, 897
Bsp13I TCCGGA 1 cut(s) 1171
Bsp143I GATC 5 cut(s) 1027, 1063, 1192, 1236, 1240
BspACI CCGC 6 cut(s) 20, 26, 65, 68, 272, 746
BspANI GGCC 3 cut(s) 101, 552, 779
BspCNI CTCAG 4 cut(s) 511, 735, 1102, 1156
BspDI ATCGAT 1 cut(s) 1239
BspEI TCCGGA 1 cut(s) 1171
BspFNI CGCG 1 cut(s) 257
BspHI TCATGA 1 cut(s) 949
BspLI GGNNCC 3 cut(s) 582, 1091, 1128
BspMI ACCTGC 2 cut(s) 158, 640
BspPI GGATC 1 cut(s) 1235
BspTI CTTAAG 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 431
BsrI ACTGG 1 cut(s) 227
BssECI CCNNGG 6 cut(s) 195, 206, 207, 511, 585, 916
BssMI GATC 5 cut(s) 1027, 1063, 1192, 1236, 1240
BssT1I CCWWGG 1 cut(s) 585
Bst2UI CCWGG 2 cut(s) 208, 867
Bst4CI ACNGT 5 cut(s) 185, 515, 930, 995, 1232
Bst6I CTCTTC 2 cut(s) 87, 101
BstAFI CTTAAG 1 cut(s) 533
BstAPI GCANNNNNTGC 2 cut(s) 308, 368
BstC8I GCNNGC 2 cut(s) 360, 1070
BstDEI CTNAG 4 cut(s) 519, 722, 1110, 1164
BstDSI CCRYGG 2 cut(s) 511, 916
BstENI CCTNNNNNAGG 1 cut(s) 106
BstF5I GGATG 4 cut(s) 265, 334, 715, 841
BstFNI CGCG 1 cut(s) 257
BstHHI GCGC 2 cut(s) 14, 257
BstKTI GATC 5 cut(s) 1030, 1066, 1195, 1239, 1243
BstMAI GTCTC 1 cut(s) 1108
BstMBI GATC 5 cut(s) 1027, 1063, 1192, 1236, 1240
BstMWI GCNNNNNNNGC 8 cut(s) 46, 49, 70, 271, 308, 355, 368, 632
BstNI CCWGG 2 cut(s) 208, 867
BstNSI RCATGY 1 cut(s) 1072
BstSCI CCNGG 5 cut(s) 194, 195, 206, 294, 865
BstSFI CTRYAG 1 cut(s) 491
BstSLI GKGCMC 1 cut(s) 566
BstUI CGCG 1 cut(s) 257
BstV2I GAAGAC 1 cut(s) 852
BstX2I RGATCY 1 cut(s) 1192
BstYI RGATCY 1 cut(s) 1192
Bsu15I ATCGAT 1 cut(s) 1239
BsuRI GGCC 3 cut(s) 101, 552, 779
BsuTUI ATCGAT 1 cut(s) 1239
BtgI CCRYGG 2 cut(s) 511, 916
BtsCI GGATG 4 cut(s) 265, 334, 715, 841
BtsIMutI CAGTG 1 cut(s) 190
BveI ACCTGC 2 cut(s) 158, 640
Cac8I GCNNGC 2 cut(s) 360, 1070
CaiI CAGNNNCTG 1 cut(s) 506
CciI TCATGA 1 cut(s) 949
CfoI GCGC 2 cut(s) 14, 257
Cfr13I GGNCC 5 cut(s) 314, 461, 991, 1090, 1127
Cfr9I CCCGGG 1 cut(s) 195
ClaI ATCGAT 1 cut(s) 1239
CseI GACGC 1 cut(s) 112
Csp6I GTAC 4 cut(s) 220, 516, 689, 1081
CviAII CATG 8 cut(s) 368, 458, 800, 815, 950, 1069, 1086, 1255
CviQI GTAC 4 cut(s) 220, 516, 689, 1081
DdeI CTNAG 4 cut(s) 519, 722, 1110, 1164
DpnI GATC 5 cut(s) 1029, 1065, 1194, 1238, 1242
DpnII GATC 5 cut(s) 1027, 1063, 1192, 1236, 1240
DraI TTTAAA 1 cut(s) 432
Eam1104I CTCTTC 2 cut(s) 87, 101
EarI CTCTTC 2 cut(s) 87, 101
EciI GGCGGA 1 cut(s) 735
Eco130I CCWWGG 1 cut(s) 585
Eco147I AGGCCT 1 cut(s) 101
Eco47I GGWCC 5 cut(s) 314, 461, 991, 1090, 1127
Eco57I CTGAAG 4 cut(s) 111, 510, 642, 776
Eco88I CYCGRG 1 cut(s) 195
EcoNI CCTNNNNNAGG 1 cut(s) 106
EcoO109I RGGNCCY 1 cut(s) 1127
EcoRI GAATTC 1 cut(s) 967
EcoRII CCWGG 2 cut(s) 206, 865
EcoT14I CCWWGG 1 cut(s) 585
ErhI CCWWGG 1 cut(s) 585
FaeI CATG 8 cut(s) 371, 461, 803, 818, 953, 1072, 1089, 1258
FaqI GGGAC 3 cut(s) 383, 981, 1103
FatI CATG 8 cut(s) 367, 457, 799, 814, 949, 1068, 1085, 1254
FauNDI CATATG 1 cut(s) 1051
FblI GTMKAC 1 cut(s) 126
FokI GGATG 4 cut(s) 252, 321, 722, 848
FspBI CTAG 1 cut(s) 477
GlaI GCGC 2 cut(s) 13, 256
HaeIII GGCC 3 cut(s) 101, 552, 779
HapII CCGG 4 cut(s) 77, 196, 296, 1172
HgaI GACGC 1 cut(s) 112
HhaI GCGC 2 cut(s) 14, 257
Hin1II CATG 8 cut(s) 371, 461, 803, 818, 953, 1072, 1089, 1258
Hin6I GCGC 2 cut(s) 12, 255
HinP1I GCGC 2 cut(s) 12, 255
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 3 cut(s) 857, 902, 1168
HpaII CCGG 4 cut(s) 77, 196, 296, 1172
HphI GGTGA 1 cut(s) 449
Hpy166II GTNNAC 6 cut(s) 127, 202, 389, 564, 976, 1228
Hpy188I TCNGA 7 cut(s) 648, 725, 808, 907, 1111, 1165, 1236
Hpy188III TCNNGA 6 cut(s) 569, 620, 950, 1031, 1139, 1172
Hpy8I GTNNAC 6 cut(s) 127, 202, 389, 564, 976, 1228
HpyAV CCTTC 8 cut(s) 327, 460, 532, 534, 563, 571, 826, 951
HpyCH4III ACNGT 5 cut(s) 185, 515, 930, 995, 1232
HpyCH4V TGCA 5 cut(s) 153, 362, 564, 1072, 1264
HpyF10VI GCNNNNNNNGC 8 cut(s) 46, 49, 70, 271, 308, 355, 368, 632
HpyF3I CTNAG 4 cut(s) 519, 722, 1110, 1164
Hsp92II CATG 8 cut(s) 371, 461, 803, 818, 953, 1072, 1089, 1258
HspAI GCGC 2 cut(s) 12, 255
Kpn2I TCCGGA 1 cut(s) 1171
Kzo9I GATC 5 cut(s) 1027, 1063, 1192, 1236, 1240
LmnI GCTCC 2 cut(s) 640, 658
LweI GCATC 2 cut(s) 274, 826
MaeI CTAG 1 cut(s) 477
MaeIII GTNAC 2 cut(s) 437, 1043
MalI GATC 5 cut(s) 1029, 1065, 1194, 1238, 1242
MboI GATC 5 cut(s) 1027, 1063, 1192, 1236, 1240
MboII GAAGA 5 cut(s) 104, 118, 403, 852, 935
MflI RGATCY 1 cut(s) 1192
MhlI GDGCHC 2 cut(s) 566, 897
MluCI AATT 6 cut(s) 244, 304, 642, 657, 967, 1118
MlyI GAGTC 2 cut(s) 866, 1177
MmeI TCCRAC 2 cut(s) 589, 671
MroI TCCGGA 1 cut(s) 1171
MroXI GAANNNNTTC 1 cut(s) 542
MseI TTAA 2 cut(s) 431, 534
MslI CAYNNNNRTG 2 cut(s) 1013, 1259
MspA1I CMGCKG 1 cut(s) 503
MspCI CTTAAG 1 cut(s) 533
MspI CCGG 4 cut(s) 77, 196, 296, 1172
MspR9I CCNGG 5 cut(s) 196, 197, 208, 296, 867
MvaI CCWGG 2 cut(s) 208, 867
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 8 cut(s) 46, 49, 70, 271, 308, 355, 368, 632
NciI CCSGG 3 cut(s) 196, 197, 296
NdeI CATATG 1 cut(s) 1051
NdeII GATC 5 cut(s) 1027, 1063, 1192, 1236, 1240
NlaIII CATG 8 cut(s) 371, 461, 803, 818, 953, 1072, 1089, 1258
NlaIV GGNNCC 3 cut(s) 582, 1091, 1128
NmuCI GTSAC 2 cut(s) 437, 1043
NspI RCATGY 1 cut(s) 1072
PaeI GCATGC 1 cut(s) 1072
PagI TCATGA 1 cut(s) 949
PasI CCCWGGG 1 cut(s) 207
PceI AGGCCT 1 cut(s) 101
PcsI WCGNNNNNNNCGW 1 cut(s) 1236
PdmI GAANNNNTTC 1 cut(s) 542
PfeI GAWTC 1 cut(s) 902
PfoI TCCNGGA 1 cut(s) 865
PleI GAGTC 2 cut(s) 865, 1176
PpsI GAGTC 2 cut(s) 865, 1176
PpuMI RGGWCCY 1 cut(s) 1127
PsiI TTATAA 1 cut(s) 378
Psp5II RGGWCCY 1 cut(s) 1127
Psp6I CCWGG 2 cut(s) 206, 865
PspGI CCWGG 2 cut(s) 206, 865
PspN4I GGNNCC 3 cut(s) 582, 1091, 1128
PspPI GGNCC 5 cut(s) 314, 461, 991, 1090, 1127
PspPPI RGGWCCY 1 cut(s) 1127
PstNI CAGNNNCTG 1 cut(s) 506
PsuI RGATCY 1 cut(s) 1192
PvuII CAGCTG 1 cut(s) 503
RsaI GTAC 4 cut(s) 221, 517, 690, 1082
RsaNI GTAC 4 cut(s) 220, 516, 689, 1081
RseI CAYNNNNRTG 2 cut(s) 1013, 1259
SaqAI TTAA 2 cut(s) 431, 534
Sau3AI GATC 5 cut(s) 1027, 1063, 1192, 1236, 1240
Sau96I GGNCC 5 cut(s) 314, 461, 991, 1090, 1127
SchI GAGTC 2 cut(s) 866, 1177
ScrFI CCNGG 5 cut(s) 196, 197, 208, 296, 867
SduI GDGCHC 2 cut(s) 566, 897
SfaNI GCATC 2 cut(s) 274, 826
SfcI CTRYAG 1 cut(s) 491
SinI GGWCC 5 cut(s) 314, 461, 991, 1090, 1127
SmaI CCCGGG 1 cut(s) 197
SmiMI CAYNNNNRTG 2 cut(s) 1013, 1259
SmlI CTYRAG 3 cut(s) 533, 567, 1139
SmoI CTYRAG 3 cut(s) 533, 567, 1139
SphI GCATGC 1 cut(s) 1072
Sse9I AATT 6 cut(s) 244, 304, 642, 657, 967, 1118
SseBI AGGCCT 1 cut(s) 101
SsiI CCGC 6 cut(s) 20, 26, 65, 68, 272, 746
SspMI CTAG 1 cut(s) 477
StuI AGGCCT 1 cut(s) 101
StyD4I CCNGG 5 cut(s) 194, 195, 206, 294, 865
StyI CCWWGG 1 cut(s) 585
TaaI ACNGT 5 cut(s) 185, 515, 930, 995, 1232
TaqI TCGA 2 cut(s) 1026, 1239
TasI AATT 6 cut(s) 244, 304, 642, 657, 967, 1118
TauI GCSGC 3 cut(s) 28, 67, 70
TfiI GAWTC 1 cut(s) 902
Tru1I TTAA 2 cut(s) 431, 534
Tru9I TTAA 2 cut(s) 431, 534
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 2 cut(s) 437, 1043
Tsp45I GTSAC 2 cut(s) 437, 1043
TspDTI ATGAA 1 cut(s) 1095
TspGWI ACGGA 2 cut(s) 774, 912
TspMI CCCGGG 1 cut(s) 195
TspRI CASTG 1 cut(s) 190
Vha464I CTTAAG 1 cut(s) 533
VneI GTGCAC 1 cut(s) 562
VpaK11BI GGWCC 5 cut(s) 314, 461, 991, 1090, 1127
XagI CCTNNNNNAGG 1 cut(s) 106
XapI RAATTY 4 cut(s) 244, 304, 642, 967
XceI RCATGY 1 cut(s) 1072
XmaI CCCGGG 1 cut(s) 195
XmiI GTMKAC 1 cut(s) 126
XmnI GAANNNNTTC 1 cut(s) 542
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.