RLG00000005584

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013265
Physical Location & Seq
Forward (+)
68812548 .. 68815679
3132 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005584

Sequence Viewer

Length: 2250 bp
ATGGTAGTCGGCGCACAACCAAAGCCGCAACCGCAATCACAACCCCAACAGCTGCAGCAGCAGCAACCCCAACCCCAGCCCCAACCAGAGGCTTCGGCTGAAGAGGAGGCCTTGAAGAGGAACACCGATTGTGTCTACTTCCTCGCCTCGCCCGTCTCCTGCAAAAAGGGAAGTGAATGTGAATATCGCCACAGTGAACATGCTTTGTACAATCCTAGGGATTGCTGGTTCTGGTTGAATGGGAATTGCTTAAATTTAAAATGCTCATTTCGGCATCCACCTCTTGATGGTTTGTTAGGGAGCCCAGCTGCAAGTTCAGCTGGACCTTCTTTGCCTCTATCACATACTGCGACAGCGCCTGCAACCAATGCTACTTTCAACTCAAGTAAACAAGCAGTCCCCTGTATCTTCTTTCAAAGGGGATTTTGTTCAAAAGCTGATAAATGCCCCTTCTCACATGGACCAAATCCTATTACTAGTAGTAAAGTTCCACAGGCCCCAGCAGCTACCCAGGGTACAGAACCTTCAAGTCTTAAGAAGATTTTTGGTGGCATTCAGAAGTGCACTCAAGAGATGAAGATTCCTCAGGTAAGTGCCTCAAAGATTGTTGGAGTGCCTGCTCAATCCAAACCTGCTCCAAAGGTTGAAACTGCACCACCACGAAATGGAGTTGGCATTGAGAGGAATGTACTAGTAACTAGAGACTTTGATGATGAGGCTCTTAGATACAAGGCAAGAAGTGTTTTGCCTGCTATGAATGGAGACTCTACAGGTCAGGCTAATCATTTTCTTCAGGCTCATGTATCAGAAAATCATGGTTTCCAAAATGGCAAGGATGTTGATGAGCATTTGAGGGAGTCTTCTCCTGGATTTGATGTTCTTGTAGATGATGAACTTGGAGATTCTGATTACTACCATGGTGAAGAACAATTTGGAATAAAAAGAGGTCATGACGGAAGGAACTTGAATTCTGTGAATGAGTATGATTTGGACTGTCCTACTGATTACAATTCAATTGCTGATGGTGATCGAGAAAGGTTTCGTGACCCACGAGGTTATGACCCTTATGATCAGATGCAAGGGAGATATGCTTGGGACCAGCACAGGGCTTCATCTGAGAGACTTCTAGTGGGCTCTGCTCATTCGGAGAGGAGGGGTTATCGTAAATCTGATAGTCCAGATCACTTTGATGGGTCAGATCTGCGACATCGTTTGTCCAAACATAGGAGGGGAAATGGTCTGAGATCCATCATCAGTAATGACTACGATGGCCATGTTGAGGAGCGAAAAAGCCGTCCTCGTAGGGATTCACAGCAATTGCCCTCACATGAGGGCTCCCTCAGCAGTCGTCTTCGTGGTAGAATAAAGCTTCCAGGTGGATCTTCTCCTGTCAATAGTAGTGACTTGCGCCAAGAGAGGGAAGCTGACAAAGGAAGGAGTCGTGACAGAAGTCGCGATGGATTGTCACCCAGAAGGCCTCAAATTATGTCCCACCAAGGAAGGCTTCGAGACAGAATACAAGGAAGGGTCCAAGAGGACTATCATAATGAGGTTAGAAATTTCGGGGTTCCTCGTATGAGGAGAGAGATAGTGGATGAAAGAAGCACAGAGTTTTCTCATCCAAAACGTCTCTCAGAGCTGAAAGGTGGGGTAGATGCAGAAATTAGGGAGCATTCTTACCTTGGAAAACCAAATAATGTGAAGATGGATAATAATCAGCAATCTGAAGGTGATCTCTCATTTGAAGGGCCAAAGCCTCTTAGCGAGATTCTGAAGAGGAAGAGAGAAGCTGAAGCAGCTGCAGCTTCTGGGAGCAGGAAAAGATCTTCTGTTAATAAACAACGCAACAATGAGAAAGAAGGCCCGGTGAGAAATCCAGGTGGCTCCGAGACAGGAGCTATTACAATTATGCATAACAGTCAGTCCCCTGTGGCCAAAGAAGAGACAAAGTCCGCAACCACTGATGCAGTTGGAGCTGAAAATGAAAAAATTGATGTGGCTCCTGGCCAGTCTTCCGAAGGACATAATGACGGCGAGCTAGAGACTGAAGATGGTCTGATATATGATGAAACACTTGAGGACCACGAGCTTGAGGTTGAAGATCAGAGGGAAGGGGAATATGATTATGAGCAAGGAGAGGACGGTGAATATACTTATGAAGAAGGTGAAAATGCAGATGGTGAAGAGGAATACCTGGAGGAGGAAGACGGGGATGACTTTGCTAAGAAGATTGGTGTCATGTTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH_2 zf-CCCH_3

Protein Analysis

750

Amino Acids

83.52

Weight (kDa)

5.55

Isoelectric Point (pI)

60.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_3 PF15663 39 - 93 5.8e-11 Zinc-finger containing family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02160
fragaria_vesca FvH4_5g18690 FvH4_5g18690
malus_domestica MD16G1008200.v1.1
prunus_persica Prupe.1G342700_v2.0.a1
pyrus_communis pycom13g00840 pycom16g00800 pycom16g00810
rosa_chinensis RchiOBHm_Chr7g0176801
rosa_laevigata RLG00000005584
rosa_multiflora Rmu_sc0005162.1_g000002
rosa_roxburghii Rroxscaffold_3G00276400
rosa_rugosa Rorug06G0401100
rosa_samantha Rh7AG000100 Rh7BG000300 Rh7CG000100 Rh7DG000400
rosa_wichuraiana Rw7G000010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 640
AccB7I CCANNNNNTGG 1 cut(s) 665
AccI GTMKAC 1 cut(s) 135
AccII CGCG 1 cut(s) 1455
AciI CCGC 3 cut(s) 26, 32, 1953
AclWI GGATC 2 cut(s) 1239, 1387
AcoI YGGCCR 3 cut(s) 1270, 1932, 2005
AcsI RAATTY 3 cut(s) 253, 967, 1558
AcuI CTGAAG 6 cut(s) 120, 776, 1746, 1793, 1812, 2067
AfaI GTAC 3 cut(s) 209, 517, 690
AfiI CCNNNNNNNGG 9 cut(s) 88, 117, 287, 665, 1105, 1224, 1279, 1417, 2200
AflII CTTAAG 1 cut(s) 533
AhlI ACTAGT 2 cut(s) 476, 691
AjnI CCWGG 6 cut(s) 510, 865, 1372, 1876, 2002, 2193
AjuI GAANNNNNNNTTGG 6 cut(s) 359, 391, 915, 947, 1488, 1520
AloI GAACNNNNNNTCC 4 cut(s) 212, 244, 861, 893
Alw21I GWGCWC 1 cut(s) 566
Alw26I GTCTC 9 cut(s) 160, 696, 756, 1114, 1503, 1634, 1883, 1937, 2036
Alw44I GTGCAC 1 cut(s) 562
AlwI GGATC 2 cut(s) 1239, 1387
AlwNI CAGNNNCTG 2 cut(s) 359, 1808
AoxI GGCC 8 cut(s) 108, 495, 1270, 1475, 1748, 1861, 1932, 2005
ApaLI GTGCAC 1 cut(s) 562
ApeKI GCWGC 9 cut(s) 52, 55, 58, 61, 308, 503, 1796, 1799, 1802
ApoI RAATTY 3 cut(s) 253, 967, 1558
ArsI GACNNNNNNTTYG 2 cut(s) 1279, 1311
Asp700I GAANNNNTTC 1 cut(s) 1038
AspA2I CCTAGG 1 cut(s) 215
AspLEI GCGC 3 cut(s) 14, 358, 1410
AspS9I GGNCC 8 cut(s) 323, 461, 496, 1096, 1528, 1748, 1862, 2080
AsuC2I CCSGG 1 cut(s) 1865
AsuHPI GGTGA 8 cut(s) 932, 1037, 1458, 1742, 1879, 2156, 2177, 2192
AvaII GGWCC 5 cut(s) 323, 461, 1096, 1528, 2080
AvrII CCTAGG 1 cut(s) 215
AxyI CCTNAGG 1 cut(s) 585
BaeGI GKGCMC 1 cut(s) 566
BalI TGGCCA 3 cut(s) 1272, 1934, 2007
BanII GRGCYC 3 cut(s) 305, 1136, 1337
BarI GAAGNNNNNNTAC 2 cut(s) 508, 540
BauI CACGAG 2 cut(s) 1050, 2084
BbsI GAAGAC 4 cut(s) 852, 1343, 2004, 2211
Bbv12I GWGCWC 1 cut(s) 566
BbvCI CCTCAGC 1 cut(s) 1340
BbvI GCAGC 9 cut(s) 39, 67, 70, 73, 295, 515, 1786, 1808, 1814
BccI CCATC 9 cut(s) 281, 1016, 1184, 1256, 1262, 1451, 1699, 2045, 2171
BceAI ACGGC 2 cut(s) 1278, 2047
BciT130I CCWGG 6 cut(s) 512, 867, 1374, 1878, 2004, 2195
BclI TGATCA 1 cut(s) 1069
BcnI CCSGG 1 cut(s) 1865
BcoDI GTCTC 9 cut(s) 160, 696, 756, 1114, 1503, 1634, 1883, 1937, 2036
BcuI ACTAGT 2 cut(s) 476, 691
BfaI CTAG 6 cut(s) 216, 477, 692, 699, 1127, 2039
BfmI CTRYAG 3 cut(s) 53, 768, 1800
BfoI RGCGCY 1 cut(s) 359
BfrI CTTAAG 1 cut(s) 533
BfuAI ACCTGC 1 cut(s) 640
BglII AGATCT 2 cut(s) 1198, 1823
BlnI CCTAGG 1 cut(s) 215
Bme1390I CCNGG 7 cut(s) 512, 867, 1374, 1865, 1878, 2004, 2195
Bme18I GGWCC 5 cut(s) 323, 461, 1096, 1528, 2080
BmgT120I GGNCC 8 cut(s) 323, 461, 496, 1096, 1528, 1748, 1862, 2080
BmiI GGNNCC 8 cut(s) 302, 498, 1097, 1336, 1529, 1569, 1885, 2001
BmrFI CCNGG 7 cut(s) 512, 867, 1374, 1865, 1878, 2004, 2195
BmsI GCATC 4 cut(s) 283, 1065, 1645, 1954
BoxI GACNNNNGTC 1 cut(s) 1449
BpiI GAAGAC 4 cut(s) 852, 1343, 2004, 2211
BpmI CTGGAG 1 cut(s) 2216
Bpu10I CCTNAGC 1 cut(s) 1340
BpuEI CTTGAG 4 cut(s) 367, 552, 2096, 2111
BpuMI CCSGG 1 cut(s) 1865
BsaBI GATNNNNATC 2 cut(s) 1026, 1713
BsaJI CCNNGG 6 cut(s) 215, 510, 511, 916, 1495, 1681
Bsc4I CCNNNNNNNGG 9 cut(s) 88, 117, 287, 665, 1105, 1224, 1279, 1417, 2200
Bse1I ACTGG 1 cut(s) 2008
Bse21I CCTNAGG 1 cut(s) 585
Bse8I GATNNNNATC 2 cut(s) 1026, 1713
BseBI CCWGG 6 cut(s) 512, 867, 1374, 1878, 2004, 2195
BseDI CCNNGG 6 cut(s) 215, 510, 511, 916, 1495, 1681
BseGI GGATG 5 cut(s) 274, 841, 1600, 1618, 2218
BseJI GATNNNNATC 2 cut(s) 1026, 1713
BseLI CCNNNNNNNGG 9 cut(s) 88, 117, 287, 665, 1105, 1224, 1279, 1417, 2200
BseMII CTCAG 5 cut(s) 599, 1107, 1232, 1354, 1647
BseNI ACTGG 1 cut(s) 2008
BseRI GAGGAG 5 cut(s) 119, 1165, 1295, 1594, 2213
BseSI GKGCMC 1 cut(s) 566
BseXI GCAGC 9 cut(s) 39, 67, 70, 73, 295, 515, 1786, 1808, 1814
BseYI CCCAGC 3 cut(s) 75, 304, 499
BsgI GTGCAG 1 cut(s) 636
Bsh1236I CGCG 1 cut(s) 1455
BshFI GGCC 8 cut(s) 110, 497, 1272, 1477, 1750, 1863, 1934, 2007
BsiHKAI GWGCWC 1 cut(s) 566
BsiSI CCGG 1 cut(s) 1865
BslFI GGGAC 4 cut(s) 383, 1109, 1474, 1909
BslI CCNNNNNNNGG 9 cut(s) 88, 117, 287, 665, 1105, 1224, 1279, 1417, 2200
BsmAI GTCTC 9 cut(s) 160, 696, 756, 1114, 1503, 1634, 1883, 1937, 2036
BsmBI CGTCTC 2 cut(s) 160, 1634
BsmFI GGGAC 4 cut(s) 383, 1109, 1474, 1909
BsmI GAATGC 2 cut(s) 552, 1672
BsnI GGCC 8 cut(s) 110, 497, 1272, 1477, 1750, 1863, 1934, 2007
Bsp1286I GDGCHC 4 cut(s) 305, 566, 1136, 1337
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 9 cut(s) 1027, 1069, 1180, 1198, 1244, 1379, 1732, 1823, 2101
Bsp19I CCATGG 1 cut(s) 916
Bsp68I TCGCGA 1 cut(s) 1455
BspACI CCGC 3 cut(s) 26, 32, 1953
BspANI GGCC 8 cut(s) 110, 497, 1272, 1477, 1750, 1863, 1934, 2007
BspCNI CTCAG 5 cut(s) 598, 1108, 1233, 1353, 1646
BspFNI CGCG 1 cut(s) 1455
BspHI TCATGA 1 cut(s) 949
BspLI GGNNCC 8 cut(s) 302, 498, 1097, 1336, 1529, 1569, 1885, 2001
BspMAI CTGCAG 2 cut(s) 57, 1804
BspMI ACCTGC 1 cut(s) 640
BspPI GGATC 2 cut(s) 1239, 1387
BspTI CTTAAG 1 cut(s) 533
BsrGI TGTACA 1 cut(s) 207
BsrI ACTGG 1 cut(s) 2008
BssECI CCNNGG 6 cut(s) 215, 510, 511, 916, 1495, 1681
BssMI GATC 9 cut(s) 1027, 1069, 1180, 1198, 1244, 1379, 1732, 1823, 2101
BssSI CACGAG 2 cut(s) 1050, 2084
BssT1I CCWWGG 4 cut(s) 215, 916, 1495, 1681
Bst2BI CACGAG 2 cut(s) 1050, 2084
Bst2UI CCWGG 6 cut(s) 512, 867, 1374, 1878, 2004, 2195
Bst4CI ACNGT 4 cut(s) 194, 995, 1919, 2144
Bst6I CTCTTC 6 cut(s) 96, 110, 1769, 1775, 1935, 2178
BstAFI CTTAAG 1 cut(s) 533
BstAPI GCANNNNNTGC 1 cut(s) 368
BstAUI TGTACA 1 cut(s) 207
BstC8I GCNNGC 4 cut(s) 360, 618, 750, 2036
BstDEI CTNAG 8 cut(s) 585, 722, 1116, 1241, 1340, 1633, 1760, 2223
BstDSI CCRYGG 1 cut(s) 916
BstENI CCTNNNNNAGG 2 cut(s) 115, 2198
BstF5I GGATG 5 cut(s) 274, 841, 1600, 1618, 2218
BstFNI CGCG 1 cut(s) 1455
BstH2I RGCGCY 1 cut(s) 359
BstHHI GCGC 3 cut(s) 14, 358, 1410
BstKTI GATC 9 cut(s) 1030, 1072, 1183, 1201, 1247, 1382, 1735, 1826, 2104
BstMAI GTCTC 9 cut(s) 160, 696, 756, 1114, 1503, 1634, 1883, 1937, 2036
BstMBI GATC 9 cut(s) 1027, 1069, 1180, 1198, 1244, 1379, 1732, 1823, 2101
BstNI CCWGG 6 cut(s) 512, 867, 1374, 1878, 2004, 2195
BstNSI RCATGY 1 cut(s) 203
BstPAI GACNNNNGTC 1 cut(s) 1449
BstSCI CCNGG 7 cut(s) 510, 865, 1372, 1863, 1876, 2002, 2193
BstSFI CTRYAG 3 cut(s) 53, 768, 1800
BstSLI GKGCMC 1 cut(s) 566
BstUI CGCG 1 cut(s) 1455
BstV1I GCAGC 9 cut(s) 39, 67, 70, 73, 295, 515, 1786, 1808, 1814
BstV2I GAAGAC 4 cut(s) 852, 1343, 2004, 2211
BstX2I RGATCY 4 cut(s) 1198, 1244, 1379, 1823
BstYI RGATCY 4 cut(s) 1198, 1244, 1379, 1823
Bsu36I CCTNAGG 1 cut(s) 585
BsuRI GGCC 8 cut(s) 110, 497, 1272, 1477, 1750, 1863, 1934, 2007
BtgI CCRYGG 1 cut(s) 916
BtgZI GCGATG 1 cut(s) 1470
BtsCI GGATG 5 cut(s) 274, 841, 1600, 1618, 2218
BtsIMutI CAGTG 2 cut(s) 199, 1959
BtuMI TCGCGA 1 cut(s) 1455
BveI ACCTGC 1 cut(s) 640
Cac8I GCNNGC 4 cut(s) 360, 618, 750, 2036
CaiI CAGNNNCTG 2 cut(s) 359, 1808
CciI TCATGA 1 cut(s) 949
CfoI GCGC 3 cut(s) 14, 358, 1410
Cfr13I GGNCC 8 cut(s) 323, 461, 496, 1096, 1528, 1748, 1862, 2080
Csp6I GTAC 3 cut(s) 208, 516, 689
CviAII CATG 9 cut(s) 200, 458, 800, 815, 917, 950, 1274, 1328, 2239
CviQI GTAC 3 cut(s) 208, 516, 689
DdeI CTNAG 8 cut(s) 585, 722, 1116, 1241, 1340, 1633, 1760, 2223
DpnI GATC 9 cut(s) 1029, 1071, 1182, 1200, 1246, 1381, 1734, 1825, 2103
DpnII GATC 9 cut(s) 1027, 1069, 1180, 1198, 1244, 1379, 1732, 1823, 2101
DraI TTTAAA 1 cut(s) 258
EaeI YGGCCR 3 cut(s) 1270, 1932, 2005
Eam1104I CTCTTC 6 cut(s) 96, 110, 1769, 1775, 1935, 2178
EarI CTCTTC 6 cut(s) 96, 110, 1769, 1775, 1935, 2178
Eco130I CCWWGG 4 cut(s) 215, 916, 1495, 1681
Eco147I AGGCCT 2 cut(s) 110, 1477
Eco24I GRGCYC 3 cut(s) 305, 1136, 1337
Eco47I GGWCC 5 cut(s) 323, 461, 1096, 1528, 2080
Eco57I CTGAAG 6 cut(s) 120, 776, 1746, 1793, 1812, 2067
Eco81I CCTNAGG 1 cut(s) 585
EcoNI CCTNNNNNAGG 2 cut(s) 115, 2198
EcoO109I RGGNCCY 1 cut(s) 496
EcoRI GAATTC 1 cut(s) 967
EcoRII CCWGG 6 cut(s) 510, 865, 1372, 1876, 2002, 2193
EcoT14I CCWWGG 4 cut(s) 215, 916, 1495, 1681
EcoT22I ATGCAT 1 cut(s) 1914
EcoT38I GRGCYC 3 cut(s) 305, 1136, 1337
ErhI CCWWGG 4 cut(s) 215, 916, 1495, 1681
Esp3I CGTCTC 2 cut(s) 160, 1634
FaeI CATG 9 cut(s) 203, 461, 803, 818, 920, 953, 1277, 1331, 2242
FalI AAGNNNNNCTT 2 cut(s) 1488, 1520
FaqI GGGAC 4 cut(s) 383, 1109, 1474, 1909
FatI CATG 9 cut(s) 199, 457, 799, 814, 916, 949, 1273, 1327, 2238
FbaI TGATCA 1 cut(s) 1069
FblI GTMKAC 1 cut(s) 135
FokI GGATG 5 cut(s) 261, 848, 1605, 1607, 2225
FriOI GRGCYC 3 cut(s) 305, 1136, 1337
FspBI CTAG 6 cut(s) 216, 477, 692, 699, 1127, 2039
GlaI GCGC 3 cut(s) 13, 357, 1409
GsaI CCCAGC 3 cut(s) 79, 308, 503
GsuI CTGGAG 1 cut(s) 2216
HaeII RGCGCY 1 cut(s) 359
HaeIII GGCC 8 cut(s) 110, 497, 1272, 1477, 1750, 1863, 1934, 2007
HapII CCGG 1 cut(s) 1865
HhaI GCGC 3 cut(s) 14, 358, 1410
Hin1II CATG 9 cut(s) 203, 461, 803, 818, 920, 953, 1277, 1331, 2242
Hin6I GCGC 3 cut(s) 12, 356, 1408
HinP1I GCGC 3 cut(s) 12, 356, 1408
HindIII AAGCTT 1 cut(s) 1367
HinfI GANTC 7 cut(s) 580, 764, 857, 902, 1307, 1438, 1768
HpaII CCGG 1 cut(s) 1865
HphI GGTGA 8 cut(s) 932, 1037, 1458, 1742, 1879, 2156, 2177, 2192
Hpy166II GTNNAC 4 cut(s) 136, 197, 389, 564
Hpy188III TCNNGA 9 cut(s) 284, 569, 950, 1031, 1043, 1178, 1442, 1454, 1508
Hpy8I GTNNAC 4 cut(s) 136, 197, 389, 564
HpyCH4III ACNGT 4 cut(s) 194, 995, 1919, 2144
HpyCH4IV ACGT 1 cut(s) 1627
HpyF3I CTNAG 8 cut(s) 585, 722, 1116, 1241, 1340, 1633, 1760, 2223
HpySE526I ACGT 1 cut(s) 1627
Hsp92II CATG 9 cut(s) 203, 461, 803, 818, 920, 953, 1277, 1331, 2242
HspAI GCGC 3 cut(s) 12, 356, 1408
Ksp22I TGATCA 1 cut(s) 1069
Kzo9I GATC 9 cut(s) 1027, 1069, 1180, 1198, 1244, 1379, 1732, 1823, 2101
Lsp1109I GCAGC 9 cut(s) 39, 67, 70, 73, 295, 515, 1786, 1808, 1814
LweI GCATC 4 cut(s) 283, 1065, 1645, 1954
MaeI CTAG 6 cut(s) 216, 477, 692, 699, 1127, 2039
MaeII ACGT 1 cut(s) 1627
MaeIII GTNAC 5 cut(s) 694, 1043, 1400, 1442, 1464
MalI GATC 9 cut(s) 1029, 1071, 1182, 1200, 1246, 1381, 1734, 1825, 2103
MboI GATC 9 cut(s) 1027, 1069, 1180, 1198, 1244, 1379, 1732, 1823, 2101
MfeI CAATTG 2 cut(s) 1014, 1316
MflI RGATCY 4 cut(s) 1198, 1244, 1379, 1823
MhlI GDGCHC 4 cut(s) 305, 566, 1136, 1337
MlsI TGGCCA 3 cut(s) 1272, 1934, 2007
MluNI TGGCCA 3 cut(s) 1272, 1934, 2007
MlyI GAGTC 3 cut(s) 758, 866, 1447
MmeI TCCRAC 2 cut(s) 589, 1951
Mox20I TGGCCA 3 cut(s) 1272, 1934, 2007
Mph1103I ATGCAT 1 cut(s) 1914
MroXI GAANNNNTTC 1 cut(s) 1038
MscI TGGCCA 3 cut(s) 1272, 1934, 2007
MseI TTAA 5 cut(s) 251, 257, 534, 1833, 2248
MslI CAYNNNNRTG 1 cut(s) 1188
Msp20I TGGCCA 3 cut(s) 1272, 1934, 2007
MspA1I CMGCKG 4 cut(s) 52, 308, 320, 1799
MspCI CTTAAG 1 cut(s) 533
MspI CCGG 1 cut(s) 1865
MspR9I CCNGG 7 cut(s) 512, 867, 1374, 1865, 1878, 2004, 2195
MunI CAATTG 2 cut(s) 1014, 1316
Mva1269I GAATGC 2 cut(s) 552, 1672
MvaI CCWGG 6 cut(s) 512, 867, 1374, 1878, 2004, 2195
MvnI CGCG 1 cut(s) 1455
NciI CCSGG 1 cut(s) 1865
NcoI CCATGG 1 cut(s) 916
NdeII GATC 9 cut(s) 1027, 1069, 1180, 1198, 1244, 1379, 1732, 1823, 2101
NlaIII CATG 9 cut(s) 203, 461, 803, 818, 920, 953, 1277, 1331, 2242
NlaIV GGNNCC 8 cut(s) 302, 498, 1097, 1336, 1529, 1569, 1885, 2001
NmuCI GTSAC 4 cut(s) 1043, 1400, 1442, 1464
NruI TCGCGA 1 cut(s) 1455
NsiI ATGCAT 1 cut(s) 1914
NspI RCATGY 1 cut(s) 203
PagI TCATGA 1 cut(s) 949
PasI CCCWGGG 1 cut(s) 511
PceI AGGCCT 2 cut(s) 110, 1477
PcsI WCGNNNNNNNCGW 2 cut(s) 150, 1048
PctI GAATGC 2 cut(s) 552, 1672
PdmI GAANNNNTTC 1 cut(s) 1038
PfeI GAWTC 4 cut(s) 580, 902, 1307, 1768
PflFI GACNNNGTC 1 cut(s) 1948
PflMI CCANNNNNTGG 1 cut(s) 665
PfoI TCCNGGA 1 cut(s) 865
PleI GAGTC 3 cut(s) 758, 865, 1446
PpsI GAGTC 3 cut(s) 758, 865, 1446
PshAI GACNNNNGTC 1 cut(s) 1449
Psp6I CCWGG 6 cut(s) 510, 865, 1372, 1876, 2002, 2193
PspFI CCCAGC 3 cut(s) 75, 304, 499
PspGI CCWGG 6 cut(s) 510, 865, 1372, 1876, 2002, 2193
PspN4I GGNNCC 8 cut(s) 302, 498, 1097, 1336, 1529, 1569, 1885, 2001
PspPI GGNCC 8 cut(s) 323, 461, 496, 1096, 1528, 1748, 1862, 2080
PstI CTGCAG 2 cut(s) 57, 1804
PstNI CAGNNNCTG 2 cut(s) 359, 1808
PsuI RGATCY 4 cut(s) 1198, 1244, 1379, 1823
PsyI GACNNNGTC 1 cut(s) 1948
PvuII CAGCTG 4 cut(s) 52, 308, 320, 1799
RruI TCGCGA 1 cut(s) 1455
RsaI GTAC 3 cut(s) 209, 517, 690
RsaNI GTAC 3 cut(s) 208, 516, 689
RseI CAYNNNNRTG 1 cut(s) 1188
SaqAI TTAA 5 cut(s) 251, 257, 534, 1833, 2248
Sau3AI GATC 9 cut(s) 1027, 1069, 1180, 1198, 1244, 1379, 1732, 1823, 2101
Sau96I GGNCC 8 cut(s) 323, 461, 496, 1096, 1528, 1748, 1862, 2080
SchI GAGTC 3 cut(s) 758, 866, 1447
ScrFI CCNGG 7 cut(s) 512, 867, 1374, 1865, 1878, 2004, 2195
SduI GDGCHC 4 cut(s) 305, 566, 1136, 1337
SfaNI GCATC 4 cut(s) 283, 1065, 1645, 1954
SfcI CTRYAG 3 cut(s) 53, 768, 1800
SinI GGWCC 5 cut(s) 323, 461, 1096, 1528, 2080
SmiMI CAYNNNNRTG 1 cut(s) 1188
SmlI CTYRAG 5 cut(s) 382, 533, 567, 2075, 2090
SmoI CTYRAG 5 cut(s) 382, 533, 567, 2075, 2090
SpeI ACTAGT 2 cut(s) 476, 691
SseBI AGGCCT 2 cut(s) 110, 1477
SsiI CCGC 3 cut(s) 26, 32, 1953
SspMI CTAG 6 cut(s) 216, 477, 692, 699, 1127, 2039
StuI AGGCCT 2 cut(s) 110, 1477
StyD4I CCNGG 7 cut(s) 510, 865, 1372, 1863, 1876, 2002, 2193
StyI CCWWGG 4 cut(s) 215, 916, 1495, 1681
TaaI ACNGT 4 cut(s) 194, 995, 1919, 2144
TaiI ACGT 1 cut(s) 1630
TaqI TCGA 2 cut(s) 1030, 1507
TatI WGTACW 2 cut(s) 207, 688
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 4 cut(s) 580, 902, 1307, 1768
Tru1I TTAA 5 cut(s) 251, 257, 534, 1833, 2248
Tru9I TTAA 5 cut(s) 251, 257, 534, 1833, 2248
TscAI CASTG 2 cut(s) 199, 1966
TseFI GTSAC 4 cut(s) 1043, 1400, 1442, 1464
TseI GCWGC 9 cut(s) 52, 55, 58, 61, 308, 503, 1796, 1799, 1802
Tsp45I GTSAC 4 cut(s) 1043, 1400, 1442, 1464
TspDTI ATGAA 8 cut(s) 590, 770, 906, 1101, 1611, 1998, 2082, 2172
TspGWI ACGGA 1 cut(s) 969
TspRI CASTG 2 cut(s) 199, 1966
Tth111I GACNNNGTC 1 cut(s) 1948
Van91I CCANNNNNTGG 1 cut(s) 665
Vha464I CTTAAG 1 cut(s) 533
VneI GTGCAC 1 cut(s) 562
VpaK11BI GGWCC 5 cut(s) 323, 461, 1096, 1528, 2080
XagI CCTNNNNNAGG 2 cut(s) 115, 2198
XapI RAATTY 3 cut(s) 253, 967, 1558
XceI RCATGY 1 cut(s) 203
XmaJI CCTAGG 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 135
XmnI GAANNNNTTC 1 cut(s) 1038
XspI CTAG 6 cut(s) 216, 477, 692, 699, 1127, 2039
Zsp2I ATGCAT 1 cut(s) 1914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.