Rroxscaffold_3G00276400

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0013265
Physical Location & Seq
Forward (+)
67673864 .. 67676993
3130 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00276400.1

Sequence Viewer

Length: 1953 bp
ATGGTAGTCGGCGCACAACCAAAGCCGCAACCGCAATCACAACCCCAACAGCTGCAGCAGCAGCAGCAACCCCAACCAGAGGCTTCGGCTGAAGAGGAGGCCTTGAAGAGGAACACCGATTGTGTCTACTTCCTCGCCTCGCCCGTCTCCTGCAAAAAGGGAAGTGAATGTGAATATCGCCACAGTGAACATGCTTTGTACAATCCTAGGGATTGCTGGTTCTGGTTGAATGGGAATTGCTTAAATTTAAAATGCTCGTTTCGGCATCCACCTCTTGATGGTTTGTTAGGGAGCCCAGCTGCAAGTTCAGCTGGACCTTCTTTGCCTCTATCACATACTGTGACAATGCCTGCAACCAATGCTACTTTCAACTCAAGTAAACAAGCAGTCCCCTGTATCTTCTTTCAAAGGGGATTTTGTTCAAAAGCTGATAAATGCCCCTTCTCACATGGACCAAATCCTATTACTAGTAGTAAAGTTCCACAGGCCCCAGCAGCTACCCATGGTACAGAACCTTCAAGTCTTAAGAAGATTTTTGGTGGCATTCAGAAGTGCACTCAAGAGATGAAGATTCCTCAGGTAAGTGCCTCAAAGATTGTTGGAGTGCCTCCTCAATCCAAACCTGCTCCAAAGGTTGAAACTGCACCACCAAGAAATGGAGTTGGCATTGAGAGGAATGTACTAGTAACTAGAGACTTTGACGATGAGGCTCTGAGATACAAGGCAAGAAGTGTTTTGCCTGCTATGAATGGAGACTCTACAGGTCAGGCCAATCATTTTCTTCAGGCTCATGTATCAGAAAATCATGGTTTCCAAAATGGCAAGGATGTTGATGAGCATTTGAGGGAGTCTTCTCCTGGATTTGATGTTCTTGTAGATGATGAGCTTGGAGATTCTGATTACTACCATGGTGAAGAACAATTTGGAATAAAAAAGAGGTTTCGTGACCCACGAGGTTATGACCCTTATGATCAGATGCAAGGGAGATATGCTTGGGACCAGCACAGGGCTTCATCTGAGAGACTTCAAGTGGGCTCTGCTCATTCAGAGAGGAGGGGTTATCGTAAATCTGATAGTCCAGATCACATTGATGGATCAGATCTGCGACATCGTTTGTCCAAACATAGGAGGGGAAATGGTCTGAGATCCATCATCAGCAATGACTACGATGGCCATGTTGAGGAGCGAAAAAGCCGTCCTCGTAGGGATTCACAGCAATTGCCCTCACATGAGGGCTCCCTCAGCAGTCGTCTTCGTGGTAGAATAAAGCTTCCAGGTGGATCTTCTCCAGTCAATAGTAGTGACTTGCGCCAAGAGAGGGGGAAGCTGACAGAGGAAGGAGTCGTGACAGAAGTCGCGATGGATTGTCACCCCAGAAGGCCTCAAATTATGTCCCACCAAGGAAGGCTTCGAGACAGAATACAAGGAAGGGTCCAAGAGGACTATAATAATGAGCATTCTTACCTTGGAAAACCAAATAACGTGAAGATGGATAATAATCAGCAATCTGAAGGTGATCTCTCATTTGAAGGGCCAAAGCCTCTTAGTGAGATTCTGAAGAGGAAGAGAGAAGCTGAAGCAGCTGCAGCTTCTGGGAGCAGGAAAAGATCTTCTGTTAATAAACAACGCAACAATGAGAAAGAAGGCCTGGTGAGAAATCCAGGTGGCTCTGAGACAGGAGCTATTACAATGATGCATAACAGTCAGTCCCCTGTGGCCAAAGAAGAAACAAAGTCTGCAACCACTGATGCAGTTGGAACTGAAAATGAAAAAATTGATGTGGCTCCTGGCCAGTCTTCCGAAGGTCATAATGACGGCGAGCTAGAGACTGAAGATGGTCTGATATATGATGAAACACTTGAGGACCACGAGCTTGAGGATGGTGAAGAGGAATACCTGGAGGAGGAAGACGGGGATGACTTTGCTAAGAAGATTGGTGTCATGTTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH_2 zf-CCCH_3

Protein Analysis

650

Amino Acids

72.12

Weight (kDa)

6.03

Isoelectric Point (pI)

63.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_3 PF15663 36 - 90 4.8e-11 Zinc-finger containing family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02160
fragaria_vesca FvH4_5g18690 FvH4_5g18690
malus_domestica MD16G1008200.v1.1
prunus_persica Prupe.1G342700_v2.0.a1
pyrus_communis pycom13g00840 pycom16g00800 pycom16g00810
rosa_chinensis RchiOBHm_Chr7g0176801
rosa_laevigata RLG00000005584
rosa_multiflora Rmu_sc0005162.1_g000002
rosa_roxburghii Rroxscaffold_3G00276400
rosa_rugosa Rorug06G0401100
rosa_samantha Rh7AG000100 Rh7BG000300 Rh7CG000100 Rh7DG000400
rosa_wichuraiana Rw7G000010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 631
AccB7I CCANNNNNTGG 1 cut(s) 656
AccI GTMKAC 1 cut(s) 126
AccII CGCG 1 cut(s) 1358
AciI CCGC 2 cut(s) 26, 32
AclWI GGATC 3 cut(s) 1102, 1140, 1288
AcoI YGGCCR 3 cut(s) 1171, 1716, 1789
AcsI RAATTY 1 cut(s) 244
AcuI CTGAAG 6 cut(s) 111, 767, 1530, 1577, 1596, 1851
AfaI GTAC 3 cut(s) 200, 508, 681
AfiI CCNNNNNNNGG 9 cut(s) 79, 108, 278, 656, 1006, 1125, 1180, 1318, 1903
AflII CTTAAG 1 cut(s) 524
AgsI TTSAA 9 cut(s) 106, 229, 370, 407, 423, 519, 638, 1028, 1529
AhlI ACTAGT 2 cut(s) 467, 682
AjnI CCWGG 6 cut(s) 856, 1273, 1647, 1660, 1786, 1896
AjuI GAANNNNNNNTTGG 6 cut(s) 350, 382, 906, 938, 1392, 1424
AloI GAACNNNNNNTCC 4 cut(s) 203, 235, 852, 884
Alw21I GWGCWC 1 cut(s) 557
Alw26I GTCTC 7 cut(s) 151, 687, 747, 1015, 1407, 1667, 1820
Alw44I GTGCAC 1 cut(s) 553
AlwI GGATC 3 cut(s) 1102, 1140, 1288
AlwNI CAGNNNCTG 1 cut(s) 1592
AoxI GGCC 9 cut(s) 99, 486, 768, 1171, 1379, 1532, 1645, 1716, 1789
ApaLI GTGCAC 1 cut(s) 553
ApoI RAATTY 1 cut(s) 244
ArsI GACNNNNNNTTYG 2 cut(s) 1180, 1212
AspA2I CCTAGG 1 cut(s) 206
AspLEI GCGC 2 cut(s) 14, 1311
AspS9I GGNCC 7 cut(s) 314, 452, 487, 997, 1432, 1532, 1864
AsuHPI GGTGA 5 cut(s) 923, 1361, 1526, 1663, 1895
AvaII GGWCC 5 cut(s) 314, 452, 997, 1432, 1864
AvrII CCTAGG 1 cut(s) 206
AxyI CCTNAGG 1 cut(s) 576
BaeGI GKGCMC 1 cut(s) 557
BalI TGGCCA 3 cut(s) 1173, 1718, 1791
BanII GRGCYC 3 cut(s) 296, 1037, 1238
BarI GAAGNNNNNNTAC 2 cut(s) 499, 531
BauI CACGAG 2 cut(s) 951, 1868
BbsI GAAGAC 4 cut(s) 843, 1244, 1788, 1914
Bbv12I GWGCWC 1 cut(s) 557
BbvCI CCTCAGC 1 cut(s) 1241
BccI CCATC 8 cut(s) 272, 1085, 1157, 1163, 1354, 1483, 1829, 1874
BceAI ACGGC 2 cut(s) 1179, 1831
BciT130I CCWGG 6 cut(s) 858, 1275, 1649, 1662, 1788, 1898
BclI TGATCA 1 cut(s) 970
BcoDI GTCTC 7 cut(s) 151, 687, 747, 1015, 1407, 1667, 1820
BcuI ACTAGT 2 cut(s) 467, 682
BfaI CTAG 5 cut(s) 207, 468, 683, 690, 1823
BfmI CTRYAG 3 cut(s) 53, 759, 1584
BfrI CTTAAG 1 cut(s) 524
BfuAI ACCTGC 1 cut(s) 631
BglII AGATCT 2 cut(s) 1099, 1607
BlnI CCTAGG 1 cut(s) 206
Bme1390I CCNGG 6 cut(s) 858, 1275, 1649, 1662, 1788, 1898
Bme18I GGWCC 5 cut(s) 314, 452, 997, 1432, 1864
BmgT120I GGNCC 7 cut(s) 314, 452, 487, 997, 1432, 1532, 1864
BmiI GGNNCC 6 cut(s) 293, 489, 998, 1237, 1433, 1785
BmrFI CCNGG 6 cut(s) 858, 1275, 1649, 1662, 1788, 1898
BmsI GCATC 4 cut(s) 274, 966, 1683, 1738
BoxI GACNNNNGTC 1 cut(s) 1352
BpiI GAAGAC 4 cut(s) 843, 1244, 1788, 1914
BpmI CTGGAG 2 cut(s) 1272, 1919
Bpu10I CCTNAGC 1 cut(s) 1241
BpuEI CTTGAG 4 cut(s) 358, 543, 1880, 1895
BsaBI GATNNNNATC 1 cut(s) 1497
BsaJI CCNNGG 5 cut(s) 206, 502, 907, 1399, 1465
Bsc4I CCNNNNNNNGG 9 cut(s) 79, 108, 278, 656, 1006, 1125, 1180, 1318, 1903
Bse1I ACTGG 2 cut(s) 1289, 1792
Bse21I CCTNAGG 1 cut(s) 576
Bse3DI GCAATG 1 cut(s) 1165
Bse8I GATNNNNATC 1 cut(s) 1497
BseBI CCWGG 6 cut(s) 858, 1275, 1649, 1662, 1788, 1898
BseDI CCNNGG 5 cut(s) 206, 502, 907, 1399, 1465
BseGI GGATG 4 cut(s) 265, 832, 1885, 1921
BseJI GATNNNNATC 1 cut(s) 1497
BseLI CCNNNNNNNGG 9 cut(s) 79, 108, 278, 656, 1006, 1125, 1180, 1318, 1903
BseMI GCAATG 1 cut(s) 1165
BseMII CTCAG 6 cut(s) 590, 704, 1008, 1133, 1255, 1662
BseNI ACTGG 2 cut(s) 1289, 1792
BseRI GAGGAG 5 cut(s) 110, 600, 1066, 1196, 1916
BseSI GKGCMC 1 cut(s) 557
BseYI CCCAGC 2 cut(s) 295, 490
BsgI GTGCAG 1 cut(s) 627
Bsh1236I CGCG 1 cut(s) 1358
BshFI GGCC 9 cut(s) 101, 488, 770, 1173, 1381, 1534, 1647, 1718, 1791
BsiHKAI GWGCWC 1 cut(s) 557
BslFI GGGAC 4 cut(s) 374, 1010, 1378, 1693
BslI CCNNNNNNNGG 9 cut(s) 79, 108, 278, 656, 1006, 1125, 1180, 1318, 1903
BsmAI GTCTC 7 cut(s) 151, 687, 747, 1015, 1407, 1667, 1820
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 4 cut(s) 374, 1010, 1378, 1693
BsmI GAATGC 2 cut(s) 543, 1456
BsnI GGCC 9 cut(s) 101, 488, 770, 1173, 1381, 1534, 1647, 1718, 1791
Bsp1286I GDGCHC 4 cut(s) 296, 557, 1037, 1238
Bsp1407I TGTACA 1 cut(s) 198
Bsp143I GATC 8 cut(s) 970, 1081, 1094, 1099, 1145, 1280, 1516, 1607
Bsp19I CCATGG 2 cut(s) 502, 907
Bsp68I TCGCGA 1 cut(s) 1358
BspACI CCGC 2 cut(s) 26, 32
BspANI GGCC 9 cut(s) 101, 488, 770, 1173, 1381, 1534, 1647, 1718, 1791
BspCNI CTCAG 6 cut(s) 589, 705, 1009, 1134, 1254, 1663
BspFNI CGCG 1 cut(s) 1358
BspLI GGNNCC 6 cut(s) 293, 489, 998, 1237, 1433, 1785
BspMAI CTGCAG 2 cut(s) 57, 1588
BspMI ACCTGC 1 cut(s) 631
BspPI GGATC 3 cut(s) 1102, 1140, 1288
BspTI CTTAAG 1 cut(s) 524
BsrDI GCAATG 1 cut(s) 1165
BsrGI TGTACA 1 cut(s) 198
BsrI ACTGG 2 cut(s) 1289, 1792
BssECI CCNNGG 5 cut(s) 206, 502, 907, 1399, 1465
BssMI GATC 8 cut(s) 970, 1081, 1094, 1099, 1145, 1280, 1516, 1607
BssSI CACGAG 2 cut(s) 951, 1868
BssT1I CCWWGG 5 cut(s) 206, 502, 907, 1399, 1465
Bst2BI CACGAG 2 cut(s) 951, 1868
Bst2UI CCWGG 6 cut(s) 858, 1275, 1649, 1662, 1788, 1898
Bst4CI ACNGT 3 cut(s) 185, 340, 1703
Bst6I CTCTTC 5 cut(s) 87, 101, 1553, 1559, 1881
BstAFI CTTAAG 1 cut(s) 524
BstAPI GCANNNNNTGC 1 cut(s) 359
BstAUI TGTACA 1 cut(s) 198
BstC8I GCNNGC 3 cut(s) 351, 741, 1820
BstDEI CTNAG 8 cut(s) 576, 713, 1017, 1142, 1241, 1544, 1671, 1926
BstDSI CCRYGG 2 cut(s) 502, 907
BstENI CCTNNNNNAGG 2 cut(s) 106, 1901
BstF5I GGATG 4 cut(s) 265, 832, 1885, 1921
BstFNI CGCG 1 cut(s) 1358
BstHHI GCGC 2 cut(s) 14, 1311
BstKTI GATC 8 cut(s) 973, 1084, 1097, 1102, 1148, 1283, 1519, 1610
BstMAI GTCTC 7 cut(s) 151, 687, 747, 1015, 1407, 1667, 1820
BstMBI GATC 8 cut(s) 970, 1081, 1094, 1099, 1145, 1280, 1516, 1607
BstNI CCWGG 6 cut(s) 858, 1275, 1649, 1662, 1788, 1898
BstNSI RCATGY 1 cut(s) 194
BstPAI GACNNNNGTC 1 cut(s) 1352
BstSCI CCNGG 6 cut(s) 856, 1273, 1647, 1660, 1786, 1896
BstSFI CTRYAG 3 cut(s) 53, 759, 1584
BstSLI GKGCMC 1 cut(s) 557
BstUI CGCG 1 cut(s) 1358
BstV2I GAAGAC 4 cut(s) 843, 1244, 1788, 1914
BstX2I RGATCY 4 cut(s) 1099, 1145, 1280, 1607
BstYI RGATCY 4 cut(s) 1099, 1145, 1280, 1607
Bsu36I CCTNAGG 1 cut(s) 576
BsuRI GGCC 9 cut(s) 101, 488, 770, 1173, 1381, 1534, 1647, 1718, 1791
BtgI CCRYGG 2 cut(s) 502, 907
BtgZI GCGATG 1 cut(s) 1373
BtsCI GGATG 4 cut(s) 265, 832, 1885, 1921
BtsIMutI CAGTG 2 cut(s) 190, 1743
BtuMI TCGCGA 1 cut(s) 1358
BveI ACCTGC 1 cut(s) 631
Cac8I GCNNGC 3 cut(s) 351, 741, 1820
CaiI CAGNNNCTG 1 cut(s) 1592
CfoI GCGC 2 cut(s) 14, 1311
Cfr13I GGNCC 7 cut(s) 314, 452, 487, 997, 1432, 1532, 1864
Csp6I GTAC 3 cut(s) 199, 507, 680
CviAII CATG 9 cut(s) 191, 449, 503, 791, 806, 908, 1175, 1229, 1942
CviQI GTAC 3 cut(s) 199, 507, 680
DdeI CTNAG 8 cut(s) 576, 713, 1017, 1142, 1241, 1544, 1671, 1926
DpnI GATC 8 cut(s) 972, 1083, 1096, 1101, 1147, 1282, 1518, 1609
DpnII GATC 8 cut(s) 970, 1081, 1094, 1099, 1145, 1280, 1516, 1607
DraI TTTAAA 1 cut(s) 249
EaeI YGGCCR 3 cut(s) 1171, 1716, 1789
Eam1104I CTCTTC 5 cut(s) 87, 101, 1553, 1559, 1881
EarI CTCTTC 5 cut(s) 87, 101, 1553, 1559, 1881
Eco130I CCWWGG 5 cut(s) 206, 502, 907, 1399, 1465
Eco147I AGGCCT 3 cut(s) 101, 1381, 1647
Eco24I GRGCYC 3 cut(s) 296, 1037, 1238
Eco47I GGWCC 5 cut(s) 314, 452, 997, 1432, 1864
Eco57I CTGAAG 6 cut(s) 111, 767, 1530, 1577, 1596, 1851
Eco81I CCTNAGG 1 cut(s) 576
EcoNI CCTNNNNNAGG 2 cut(s) 106, 1901
EcoO109I RGGNCCY 1 cut(s) 487
EcoRII CCWGG 6 cut(s) 856, 1273, 1647, 1660, 1786, 1896
EcoT14I CCWWGG 5 cut(s) 206, 502, 907, 1399, 1465
EcoT22I ATGCAT 1 cut(s) 1698
EcoT38I GRGCYC 3 cut(s) 296, 1037, 1238
ErhI CCWWGG 5 cut(s) 206, 502, 907, 1399, 1465
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 9 cut(s) 194, 452, 506, 794, 809, 911, 1178, 1232, 1945
FalI AAGNNNNNCTT 2 cut(s) 1392, 1424
FaqI GGGAC 4 cut(s) 374, 1010, 1378, 1693
FatI CATG 9 cut(s) 190, 448, 502, 790, 805, 907, 1174, 1228, 1941
FbaI TGATCA 1 cut(s) 970
FblI GTMKAC 1 cut(s) 126
FokI GGATG 4 cut(s) 252, 839, 1892, 1928
FriOI GRGCYC 3 cut(s) 296, 1037, 1238
FspBI CTAG 5 cut(s) 207, 468, 683, 690, 1823
GlaI GCGC 2 cut(s) 13, 1310
GsaI CCCAGC 2 cut(s) 299, 494
GsuI CTGGAG 2 cut(s) 1272, 1919
HaeIII GGCC 9 cut(s) 101, 488, 770, 1173, 1381, 1534, 1647, 1718, 1791
HhaI GCGC 2 cut(s) 14, 1311
Hin1II CATG 9 cut(s) 194, 452, 506, 794, 809, 911, 1178, 1232, 1945
Hin6I GCGC 2 cut(s) 12, 1309
HinP1I GCGC 2 cut(s) 12, 1309
HindIII AAGCTT 1 cut(s) 1268
HinfI GANTC 7 cut(s) 571, 755, 848, 893, 1208, 1341, 1552
HphI GGTGA 5 cut(s) 923, 1361, 1526, 1663, 1895
Hpy166II GTNNAC 4 cut(s) 127, 188, 380, 555
Hpy188III TCNNGA 8 cut(s) 275, 560, 944, 1079, 1345, 1357, 1412, 1950
Hpy8I GTNNAC 4 cut(s) 127, 188, 380, 555
HpyCH4III ACNGT 3 cut(s) 185, 340, 1703
HpyCH4IV ACGT 1 cut(s) 1482
HpyF3I CTNAG 8 cut(s) 576, 713, 1017, 1142, 1241, 1544, 1671, 1926
HpySE526I ACGT 1 cut(s) 1482
Hsp92II CATG 9 cut(s) 194, 452, 506, 794, 809, 911, 1178, 1232, 1945
HspAI GCGC 2 cut(s) 12, 1309
Ksp22I TGATCA 1 cut(s) 970
Kzo9I GATC 8 cut(s) 970, 1081, 1094, 1099, 1145, 1280, 1516, 1607
LmnI GCTCC 7 cut(s) 291, 631, 1183, 1241, 1596, 1679, 1789
LweI GCATC 4 cut(s) 274, 966, 1683, 1738
MaeI CTAG 5 cut(s) 207, 468, 683, 690, 1823
MaeII ACGT 1 cut(s) 1482
MaeIII GTNAC 6 cut(s) 340, 685, 944, 1301, 1345, 1367
MalI GATC 8 cut(s) 972, 1083, 1096, 1101, 1147, 1282, 1518, 1609
MboI GATC 8 cut(s) 970, 1081, 1094, 1099, 1145, 1280, 1516, 1607
MfeI CAATTG 1 cut(s) 1217
MflI RGATCY 4 cut(s) 1099, 1145, 1280, 1607
MhlI GDGCHC 4 cut(s) 296, 557, 1037, 1238
MlsI TGGCCA 3 cut(s) 1173, 1718, 1791
MluCI AATT 6 cut(s) 235, 244, 920, 1217, 1386, 1773
MluNI TGGCCA 3 cut(s) 1173, 1718, 1791
MlyI GAGTC 3 cut(s) 749, 857, 1350
MmeI TCCRAC 2 cut(s) 580, 1735
Mox20I TGGCCA 3 cut(s) 1173, 1718, 1791
Mph1103I ATGCAT 1 cut(s) 1698
MscI TGGCCA 3 cut(s) 1173, 1718, 1791
MseI TTAA 4 cut(s) 242, 248, 525, 1617
MslI CAYNNNNRTG 1 cut(s) 1089
Msp20I TGGCCA 3 cut(s) 1173, 1718, 1791
MspA1I CMGCKG 4 cut(s) 52, 299, 311, 1583
MspCI CTTAAG 1 cut(s) 524
MspR9I CCNGG 6 cut(s) 858, 1275, 1649, 1662, 1788, 1898
MunI CAATTG 1 cut(s) 1217
Mva1269I GAATGC 2 cut(s) 543, 1456
MvaI CCWGG 6 cut(s) 858, 1275, 1649, 1662, 1788, 1898
MvnI CGCG 1 cut(s) 1358
NcoI CCATGG 2 cut(s) 502, 907
NdeII GATC 8 cut(s) 970, 1081, 1094, 1099, 1145, 1280, 1516, 1607
NlaIII CATG 9 cut(s) 194, 452, 506, 794, 809, 911, 1178, 1232, 1945
NlaIV GGNNCC 6 cut(s) 293, 489, 998, 1237, 1433, 1785
NmuCI GTSAC 5 cut(s) 340, 944, 1301, 1345, 1367
NruI TCGCGA 1 cut(s) 1358
NsiI ATGCAT 1 cut(s) 1698
NspI RCATGY 1 cut(s) 194
PceI AGGCCT 3 cut(s) 101, 1381, 1647
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 949
PctI GAATGC 2 cut(s) 543, 1456
PfeI GAWTC 4 cut(s) 571, 893, 1208, 1552
PflMI CCANNNNNTGG 1 cut(s) 656
PfoI TCCNGGA 1 cut(s) 856
PleI GAGTC 3 cut(s) 749, 856, 1349
PpsI GAGTC 3 cut(s) 749, 856, 1349
PshAI GACNNNNGTC 1 cut(s) 1352
Psp6I CCWGG 6 cut(s) 856, 1273, 1647, 1660, 1786, 1896
PspFI CCCAGC 2 cut(s) 295, 490
PspGI CCWGG 6 cut(s) 856, 1273, 1647, 1660, 1786, 1896
PspN4I GGNNCC 6 cut(s) 293, 489, 998, 1237, 1433, 1785
PspPI GGNCC 7 cut(s) 314, 452, 487, 997, 1432, 1532, 1864
PstI CTGCAG 2 cut(s) 57, 1588
PstNI CAGNNNCTG 1 cut(s) 1592
PsuI RGATCY 4 cut(s) 1099, 1145, 1280, 1607
PvuII CAGCTG 4 cut(s) 52, 299, 311, 1583
RruI TCGCGA 1 cut(s) 1358
RsaI GTAC 3 cut(s) 200, 508, 681
RsaNI GTAC 3 cut(s) 199, 507, 680
RseI CAYNNNNRTG 1 cut(s) 1089
SaqAI TTAA 4 cut(s) 242, 248, 525, 1617
Sau3AI GATC 8 cut(s) 970, 1081, 1094, 1099, 1145, 1280, 1516, 1607
Sau96I GGNCC 7 cut(s) 314, 452, 487, 997, 1432, 1532, 1864
SchI GAGTC 3 cut(s) 749, 857, 1350
ScrFI CCNGG 6 cut(s) 858, 1275, 1649, 1662, 1788, 1898
SduI GDGCHC 4 cut(s) 296, 557, 1037, 1238
SfaNI GCATC 4 cut(s) 274, 966, 1683, 1738
SfcI CTRYAG 3 cut(s) 53, 759, 1584
SinI GGWCC 5 cut(s) 314, 452, 997, 1432, 1864
SmiMI CAYNNNNRTG 1 cut(s) 1089
SmlI CTYRAG 5 cut(s) 373, 524, 558, 1859, 1874
SmoI CTYRAG 5 cut(s) 373, 524, 558, 1859, 1874
SpeI ACTAGT 2 cut(s) 467, 682
Sse9I AATT 6 cut(s) 235, 244, 920, 1217, 1386, 1773
SseBI AGGCCT 3 cut(s) 101, 1381, 1647
SsiI CCGC 2 cut(s) 26, 32
SspMI CTAG 5 cut(s) 207, 468, 683, 690, 1823
StuI AGGCCT 3 cut(s) 101, 1381, 1647
StyD4I CCNGG 6 cut(s) 856, 1273, 1647, 1660, 1786, 1896
StyI CCWWGG 5 cut(s) 206, 502, 907, 1399, 1465
TaaI ACNGT 3 cut(s) 185, 340, 1703
TaiI ACGT 1 cut(s) 1485
TaqI TCGA 1 cut(s) 1411
TasI AATT 6 cut(s) 235, 244, 920, 1217, 1386, 1773
TatI WGTACW 2 cut(s) 198, 679
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 4 cut(s) 571, 893, 1208, 1552
Tru1I TTAA 4 cut(s) 242, 248, 525, 1617
Tru9I TTAA 4 cut(s) 242, 248, 525, 1617
TscAI CASTG 2 cut(s) 190, 1750
TseFI GTSAC 5 cut(s) 340, 944, 1301, 1345, 1367
Tsp45I GTSAC 5 cut(s) 340, 944, 1301, 1345, 1367
TspDTI ATGAA 5 cut(s) 581, 761, 1002, 1782, 1866
TspRI CASTG 2 cut(s) 190, 1750
Van91I CCANNNNNTGG 1 cut(s) 656
Vha464I CTTAAG 1 cut(s) 524
VneI GTGCAC 1 cut(s) 553
VpaK11BI GGWCC 5 cut(s) 314, 452, 997, 1432, 1864
XagI CCTNNNNNAGG 2 cut(s) 106, 1901
XapI RAATTY 1 cut(s) 244
XceI RCATGY 1 cut(s) 194
XmaJI CCTAGG 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 126
XspI CTAG 5 cut(s) 207, 468, 683, 690, 1823
Zsp2I ATGCAT 1 cut(s) 1698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.