RchiOBHm_Chr7g0176801

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013265
Physical Location & Seq
Reverse (-)
1927 .. 5614
3688 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15745

Sequence Viewer

Length: 2253 bp
ATGGTAGTCGGCGCACAACCAAAGCCGCAACCGCAATCACAACCCCAACAGCTGCAGCAGCAGCAGCAGCAACCCCAACCCCAACCAGAGGCTTCTGCTGAAGAGGAGGCCTTGAAGAGGAACACCGATTGTGTCTACTTCCTTGCCTCGCCCGTCTCCTGCAAAAAGGGAAGTGAATGTGAATATCGCCACAGTGAACATGCTTTGTACAATCCTAGGGATTGCTGGTTCTGGTTGAATGGGAATTGCTTAAATTTAAAATGCTCGTTTCGGCATCCACCTCTTGATGGTTTGTTAGGGAGCCCAGCTGCAAGTTCAGCTGGACCTTCTTTGCCTCTATCACATACTGTGACAACACCTGCAACCAATGCTACTTTCAACTCAAGTAAACAAGCAGTCCCCTGTATCTTCTTTCAAAGGGGATTTTGTTCAAAAGCTGATAAATGCCCCTTCTCACATGGACCAAATCCAATTACTAGTAGTAAAGTTCCACAGGCCCCAGCAGCTACCCATGGTACAGAACCTTCAAGTCTTAAGAAGATTTTTGGTGGCATTCAGAAGTGCACTCAAGTGATGAAGATTCCTCAGGTAAGTGCCTCAAAGATTGTTGGAGTGCCTCCTCAATCCAAACCTGCTCCAAAGGTTGAAACTGCACCACCACGAAATGGAGTTGGCATTGAGAGGAATGTACTAGTAACTAGAGACTTTGACGATGAGGCTCTTAGATACAAGGCAAGAAGTGTTTTGCCTGCTATGAATGGAGACTCTACAGGTCAGGCCAATCATTTTCTTCGGGCTCATGTATCAGAAAATCATGGTTTCCAAAATGGCAAGGATGTTGATGAGCATTTGAGGGAGTCTTCTCCTGGATTTGATGTTCTTGTAGATGATGAACTTGGAGATTCTGATTACTACCATGGTGAAGAACAATTTGGTATAAAAAGAGGTCATGACGGAAGGAACTTGAATTCTGTGAATGAGTATGATTTGGACTGTCCTACTGATTACAATTCAATTGCTGATGGTGATCGAGAAAGGTTTCGTGACCCACGAGGTTATGACCCTTATGATCAGATGCAAGGGAGATATGCTTGGGACCAGCACAGGGCTTCATCTGAGAGACTTCTAGTGGGCTCTGCTCATTCGGAGAGGAGGGGTTATCGTAAATCTGATAGTCCAGATCACATTGATGGTTCAGATCTGCGACATCGTTTGTCCAAACATAGGAGGGGAAATGGTCTGAGATCCATCATCAGCAATGACTACGATGGCCATGTTGAGGAGCGAAAAAGCCGTCCTCGTAGGGATTCACAACAATTGCCCTCACATGAGGGCTCCCTCAGCAGTCGTCTTCGTGGTAGAATAAAGCTTCCAGGTGGATCTTCTCCAGTCAATAGTAGTGACTTGCGCCAAGAGAGGGAAGCTGACAGAGGAAGGAGTCGTGACAGGAGTCGCGAGGGATTGTCACCCAGAAGGCCTCAAATTATGTCCCACCAAGGAAGGCTTCGAGACAGAATACAAGGAAGGGTTCAAGAGGACTATGATAATGAGGTTAGAAATTTCGGGGTGGTTCCTCGTATGAGGAGAGAGATAGTGGATGAAAGAAGCACAGAGTTTTCTCATCCAAAACGTCTCTCAGAGCTGAAAGGTGGGGTAGATGCAGAAATTAGGGAGCATTCTTACCTTGGAAAACCAAATAATGTGAAGATGGATAATAATCAGCTATCTGAAGGTGATCTCTCATTTGAAGGGCCAAAGCCTCTTAGCGAGATTCTGAAGAGGAAGAGAGAAGCTGAAGCAGCTGCAGCTTCTGGGAGCAGGAAAAGATCTTCTGTTAATAAACAACGCAACAATGAGAAAGAAGGCCCGGTGAGAAATCCAAGTGGCTCCGAGACAGGAGCTATTACAATGATGCATAACAGTCAGTCCCCTGTGGCCAAAGAAGAGACAAAGTCTGCAACCACTGATGCAGTTGGAGCTGAAAATGAAAAAATTGATGTGGCTCCTGGCCAGTCTTCCGAAGGACATAATGATGGCGAGCTAGAGACTGAAGATGGTCTGATATATGATGAAACACTTGAGGACCACGAGCTTGAGGGTGAAGATCAGAGGGAAGGGGAATATGATTATGAGCAAGGAGAGGATGGTGAATATACTTACGAAGAAGGTGAAAATGCAGATGCTGAAGAGGAATACCTGGAGGAGGAAGACGGGGATGACTTTGCTAAGAAGATTGGTGTCATGTTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH_2 zf-CCCH_3

Protein Analysis

750

Amino Acids

83.73

Weight (kDa)

5.59

Isoelectric Point (pI)

59.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_3 PF15663 39 - 93 5.8e-11 Zinc-finger containing family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02160
fragaria_vesca FvH4_5g18690 FvH4_5g18690
malus_domestica MD16G1008200.v1.1
prunus_persica Prupe.1G342700_v2.0.a1
pyrus_communis pycom13g00840 pycom16g00800 pycom16g00810
rosa_chinensis RchiOBHm_Chr7g0176801
rosa_laevigata RLG00000005584
rosa_multiflora Rmu_sc0005162.1_g000002
rosa_roxburghii Rroxscaffold_3G00276400
rosa_rugosa Rorug06G0401100
rosa_samantha Rh7AG000100 Rh7BG000300 Rh7CG000100 Rh7DG000400
rosa_wichuraiana Rw7G000010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 367
Acc36I ACCTGC 2 cut(s) 367, 640
AccB7I CCANNNNNTGG 1 cut(s) 665
AccI GTMKAC 1 cut(s) 135
AccII CGCG 1 cut(s) 1455
AciI CCGC 2 cut(s) 26, 32
AclWI GGATC 2 cut(s) 1239, 1387
AcoI YGGCCR 3 cut(s) 1270, 1935, 2008
AcsI RAATTY 3 cut(s) 253, 967, 1558
AcuI CTGAAG 6 cut(s) 120, 1749, 1796, 1815, 2070, 2205
AfaI GTAC 3 cut(s) 209, 517, 690
AfiI CCNNNNNNNGG 9 cut(s) 88, 117, 287, 665, 1105, 1224, 1279, 1417, 2203
AflII CTTAAG 1 cut(s) 533
AhlI ACTAGT 2 cut(s) 476, 691
AjnI CCWGG 4 cut(s) 865, 1372, 2005, 2196
AjuI GAANNNNNNNTTGG 6 cut(s) 359, 391, 915, 947, 1488, 1520
AleI CACNNNNGTG 1 cut(s) 569
AloI GAACNNNNNNTCC 4 cut(s) 212, 244, 861, 893
Alw21I GWGCWC 1 cut(s) 566
Alw26I GTCTC 9 cut(s) 160, 696, 756, 1114, 1503, 1637, 1886, 1940, 2039
Alw44I GTGCAC 1 cut(s) 562
AlwI GGATC 2 cut(s) 1239, 1387
AlwNI CAGNNNCTG 2 cut(s) 1811, 2183
AoxI GGCC 9 cut(s) 108, 495, 777, 1270, 1475, 1751, 1864, 1935, 2008
ApaLI GTGCAC 1 cut(s) 562
ApoI RAATTY 3 cut(s) 253, 967, 1558
ArsI GACNNNNNNTTYG 2 cut(s) 1279, 1311
Asp700I GAANNNNTTC 1 cut(s) 1038
AspA2I CCTAGG 1 cut(s) 215
AspLEI GCGC 2 cut(s) 14, 1410
AspS9I GGNCC 7 cut(s) 323, 461, 496, 1096, 1751, 1865, 2083
AsuC2I CCSGG 1 cut(s) 1868
AsuHPI GGTGA 8 cut(s) 932, 1037, 1458, 1745, 1882, 2111, 2159, 2180
AvaII GGWCC 4 cut(s) 323, 461, 1096, 2083
AvrII CCTAGG 1 cut(s) 215
AxyI CCTNAGG 1 cut(s) 585
BaeGI GKGCMC 1 cut(s) 566
BalI TGGCCA 3 cut(s) 1272, 1937, 2010
BanII GRGCYC 4 cut(s) 305, 799, 1136, 1337
BarI GAAGNNNNNNTAC 2 cut(s) 508, 540
BauI CACGAG 2 cut(s) 1050, 2087
BbsI GAAGAC 4 cut(s) 852, 1343, 2007, 2214
Bbv12I GWGCWC 1 cut(s) 566
BbvCI CCTCAGC 1 cut(s) 1340
BccI CCATC 9 cut(s) 281, 1016, 1184, 1256, 1262, 1702, 2027, 2048, 2138
BceAI ACGGC 1 cut(s) 1278
BciT130I CCWGG 4 cut(s) 867, 1374, 2007, 2198
BclI TGATCA 1 cut(s) 1069
BcnI CCSGG 1 cut(s) 1868
BcoDI GTCTC 9 cut(s) 160, 696, 756, 1114, 1503, 1637, 1886, 1940, 2039
BcuI ACTAGT 2 cut(s) 476, 691
BfaI CTAG 6 cut(s) 216, 477, 692, 699, 1127, 2042
BfmI CTRYAG 3 cut(s) 53, 768, 1803
BfrI CTTAAG 1 cut(s) 533
BfuAI ACCTGC 2 cut(s) 367, 640
BglII AGATCT 2 cut(s) 1198, 1826
BlnI CCTAGG 1 cut(s) 215
Bme1390I CCNGG 5 cut(s) 867, 1374, 1868, 2007, 2198
Bme18I GGWCC 4 cut(s) 323, 461, 1096, 2083
BmgT120I GGNCC 7 cut(s) 323, 461, 496, 1096, 1751, 1865, 2083
BmiI GGNNCC 7 cut(s) 302, 498, 1097, 1336, 1572, 1888, 2004
BmrFI CCNGG 5 cut(s) 867, 1374, 1868, 2007, 2198
BmsI GCATC 6 cut(s) 283, 1065, 1648, 1902, 1957, 2170
BoxI GACNNNNGTC 1 cut(s) 1449
BpiI GAAGAC 4 cut(s) 852, 1343, 2007, 2214
BpmI CTGGAG 2 cut(s) 1371, 2219
Bpu10I CCTNAGC 1 cut(s) 1340
BpuEI CTTGAG 4 cut(s) 367, 552, 2099, 2114
BpuMI CCSGG 1 cut(s) 1868
BsaBI GATNNNNATC 2 cut(s) 1026, 1716
BsaJI CCNNGG 5 cut(s) 215, 511, 916, 1495, 1684
Bsc4I CCNNNNNNNGG 9 cut(s) 88, 117, 287, 665, 1105, 1224, 1279, 1417, 2203
Bse1I ACTGG 2 cut(s) 1388, 2011
Bse21I CCTNAGG 1 cut(s) 585
Bse3DI GCAATG 1 cut(s) 1264
Bse8I GATNNNNATC 2 cut(s) 1026, 1716
BseBI CCWGG 4 cut(s) 867, 1374, 2007, 2198
BseDI CCNNGG 5 cut(s) 215, 511, 916, 1495, 1684
BseGI GGATG 6 cut(s) 274, 841, 1603, 1621, 2149, 2221
BseJI GATNNNNATC 2 cut(s) 1026, 1716
BseLI CCNNNNNNNGG 9 cut(s) 88, 117, 287, 665, 1105, 1224, 1279, 1417, 2203
BseMI GCAATG 1 cut(s) 1264
BseMII CTCAG 5 cut(s) 599, 1107, 1232, 1354, 1650
BseNI ACTGG 2 cut(s) 1388, 2011
BseRI GAGGAG 6 cut(s) 119, 609, 1165, 1295, 1597, 2216
BseSI GKGCMC 1 cut(s) 566
BseYI CCCAGC 2 cut(s) 304, 499
BsgI GTGCAG 1 cut(s) 636
Bsh1236I CGCG 1 cut(s) 1455
BshFI GGCC 9 cut(s) 110, 497, 779, 1272, 1477, 1753, 1866, 1937, 2010
BsiHKAI GWGCWC 1 cut(s) 566
BsiSI CCGG 1 cut(s) 1868
BslFI GGGAC 4 cut(s) 383, 1109, 1474, 1912
BslI CCNNNNNNNGG 9 cut(s) 88, 117, 287, 665, 1105, 1224, 1279, 1417, 2203
BsmAI GTCTC 9 cut(s) 160, 696, 756, 1114, 1503, 1637, 1886, 1940, 2039
BsmBI CGTCTC 2 cut(s) 160, 1637
BsmFI GGGAC 4 cut(s) 383, 1109, 1474, 1912
BsmI GAATGC 2 cut(s) 552, 1675
BsnI GGCC 9 cut(s) 110, 497, 779, 1272, 1477, 1753, 1866, 1937, 2010
Bsp1286I GDGCHC 5 cut(s) 305, 566, 799, 1136, 1337
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 9 cut(s) 1027, 1069, 1180, 1198, 1244, 1379, 1735, 1826, 2104
Bsp19I CCATGG 2 cut(s) 511, 916
Bsp68I TCGCGA 1 cut(s) 1455
BspACI CCGC 2 cut(s) 26, 32
BspANI GGCC 9 cut(s) 110, 497, 779, 1272, 1477, 1753, 1866, 1937, 2010
BspCNI CTCAG 5 cut(s) 598, 1108, 1233, 1353, 1649
BspFNI CGCG 1 cut(s) 1455
BspHI TCATGA 1 cut(s) 949
BspLI GGNNCC 7 cut(s) 302, 498, 1097, 1336, 1572, 1888, 2004
BspMAI CTGCAG 2 cut(s) 57, 1807
BspMI ACCTGC 2 cut(s) 367, 640
BspPI GGATC 2 cut(s) 1239, 1387
BspTI CTTAAG 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 1264
BsrGI TGTACA 1 cut(s) 207
BsrI ACTGG 2 cut(s) 1388, 2011
BssECI CCNNGG 5 cut(s) 215, 511, 916, 1495, 1684
BssMI GATC 9 cut(s) 1027, 1069, 1180, 1198, 1244, 1379, 1735, 1826, 2104
BssSI CACGAG 2 cut(s) 1050, 2087
BssT1I CCWWGG 5 cut(s) 215, 511, 916, 1495, 1684
Bst2BI CACGAG 2 cut(s) 1050, 2087
Bst2UI CCWGG 4 cut(s) 867, 1374, 2007, 2198
Bst4CI ACNGT 4 cut(s) 194, 349, 995, 1922
Bst6I CTCTTC 6 cut(s) 96, 110, 1772, 1778, 1938, 2181
BstAFI CTTAAG 1 cut(s) 533
BstAPI GCANNNNNTGC 1 cut(s) 368
BstAUI TGTACA 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 750, 2039
BstDEI CTNAG 8 cut(s) 585, 722, 1116, 1241, 1340, 1636, 1763, 2226
BstDSI CCRYGG 2 cut(s) 511, 916
BstENI CCTNNNNNAGG 2 cut(s) 115, 2201
BstF5I GGATG 6 cut(s) 274, 841, 1603, 1621, 2149, 2221
BstFNI CGCG 1 cut(s) 1455
BstHHI GCGC 2 cut(s) 14, 1410
BstKTI GATC 9 cut(s) 1030, 1072, 1183, 1201, 1247, 1382, 1738, 1829, 2107
BstMAI GTCTC 9 cut(s) 160, 696, 756, 1114, 1503, 1637, 1886, 1940, 2039
BstMBI GATC 9 cut(s) 1027, 1069, 1180, 1198, 1244, 1379, 1735, 1826, 2104
BstNI CCWGG 4 cut(s) 867, 1374, 2007, 2198
BstNSI RCATGY 1 cut(s) 203
BstPAI GACNNNNGTC 1 cut(s) 1449
BstSCI CCNGG 5 cut(s) 865, 1372, 1866, 2005, 2196
BstSFI CTRYAG 3 cut(s) 53, 768, 1803
BstSLI GKGCMC 1 cut(s) 566
BstUI CGCG 1 cut(s) 1455
BstV2I GAAGAC 4 cut(s) 852, 1343, 2007, 2214
BstX2I RGATCY 4 cut(s) 1198, 1244, 1379, 1826
BstYI RGATCY 4 cut(s) 1198, 1244, 1379, 1826
Bsu36I CCTNAGG 1 cut(s) 585
BsuRI GGCC 9 cut(s) 110, 497, 779, 1272, 1477, 1753, 1866, 1937, 2010
BtgI CCRYGG 2 cut(s) 511, 916
BtsCI GGATG 6 cut(s) 274, 841, 1603, 1621, 2149, 2221
BtsIMutI CAGTG 2 cut(s) 199, 1962
BtuMI TCGCGA 1 cut(s) 1455
BveI ACCTGC 2 cut(s) 367, 640
Cac8I GCNNGC 2 cut(s) 750, 2039
CaiI CAGNNNCTG 2 cut(s) 1811, 2183
CciI TCATGA 1 cut(s) 949
CfoI GCGC 2 cut(s) 14, 1410
Cfr13I GGNCC 7 cut(s) 323, 461, 496, 1096, 1751, 1865, 2083
Csp6I GTAC 3 cut(s) 208, 516, 689
CviQI GTAC 3 cut(s) 208, 516, 689
DdeI CTNAG 8 cut(s) 585, 722, 1116, 1241, 1340, 1636, 1763, 2226
DpnI GATC 9 cut(s) 1029, 1071, 1182, 1200, 1246, 1381, 1737, 1828, 2106
DpnII GATC 9 cut(s) 1027, 1069, 1180, 1198, 1244, 1379, 1735, 1826, 2104
DraI TTTAAA 1 cut(s) 258
EaeI YGGCCR 3 cut(s) 1270, 1935, 2008
Eam1104I CTCTTC 6 cut(s) 96, 110, 1772, 1778, 1938, 2181
EarI CTCTTC 6 cut(s) 96, 110, 1772, 1778, 1938, 2181
Eco130I CCWWGG 5 cut(s) 215, 511, 916, 1495, 1684
Eco147I AGGCCT 2 cut(s) 110, 1477
Eco24I GRGCYC 4 cut(s) 305, 799, 1136, 1337
Eco47I GGWCC 4 cut(s) 323, 461, 1096, 2083
Eco57I CTGAAG 6 cut(s) 120, 1749, 1796, 1815, 2070, 2205
Eco81I CCTNAGG 1 cut(s) 585
EcoNI CCTNNNNNAGG 2 cut(s) 115, 2201
EcoO109I RGGNCCY 1 cut(s) 496
EcoRI GAATTC 1 cut(s) 967
EcoRII CCWGG 4 cut(s) 865, 1372, 2005, 2196
EcoT14I CCWWGG 5 cut(s) 215, 511, 916, 1495, 1684
EcoT22I ATGCAT 1 cut(s) 1917
EcoT38I GRGCYC 4 cut(s) 305, 799, 1136, 1337
ErhI CCWWGG 5 cut(s) 215, 511, 916, 1495, 1684
Esp3I CGTCTC 2 cut(s) 160, 1637
FalI AAGNNNNNCTT 2 cut(s) 1488, 1520
FaqI GGGAC 4 cut(s) 383, 1109, 1474, 1912
FbaI TGATCA 1 cut(s) 1069
FblI GTMKAC 1 cut(s) 135
FokI GGATG 6 cut(s) 261, 848, 1608, 1610, 2156, 2228
FriOI GRGCYC 4 cut(s) 305, 799, 1136, 1337
FspBI CTAG 6 cut(s) 216, 477, 692, 699, 1127, 2042
GlaI GCGC 2 cut(s) 13, 1409
GsaI CCCAGC 2 cut(s) 308, 503
GsuI CTGGAG 2 cut(s) 1371, 2219
HaeIII GGCC 9 cut(s) 110, 497, 779, 1272, 1477, 1753, 1866, 1937, 2010
HapII CCGG 1 cut(s) 1868
HhaI GCGC 2 cut(s) 14, 1410
Hin6I GCGC 2 cut(s) 12, 1408
HinP1I GCGC 2 cut(s) 12, 1408
HindIII AAGCTT 1 cut(s) 1367
HinfI GANTC 8 cut(s) 580, 764, 857, 902, 1307, 1438, 1450, 1771
HpaII CCGG 1 cut(s) 1868
HphI GGTGA 8 cut(s) 932, 1037, 1458, 1745, 1882, 2111, 2159, 2180
Hpy166II GTNNAC 4 cut(s) 136, 197, 389, 564
Hpy8I GTNNAC 4 cut(s) 136, 197, 389, 564
HpyCH4III ACNGT 4 cut(s) 194, 349, 995, 1922
HpyCH4IV ACGT 1 cut(s) 1630
HpyF3I CTNAG 8 cut(s) 585, 722, 1116, 1241, 1340, 1636, 1763, 2226
HpySE526I ACGT 1 cut(s) 1630
HspAI GCGC 2 cut(s) 12, 1408
Ksp22I TGATCA 1 cut(s) 1069
Kzo9I GATC 9 cut(s) 1027, 1069, 1180, 1198, 1244, 1379, 1735, 1826, 2104
LweI GCATC 6 cut(s) 283, 1065, 1648, 1902, 1957, 2170
MaeI CTAG 6 cut(s) 216, 477, 692, 699, 1127, 2042
MaeII ACGT 1 cut(s) 1630
MaeIII GTNAC 6 cut(s) 349, 694, 1043, 1400, 1442, 1464
MalI GATC 9 cut(s) 1029, 1071, 1182, 1200, 1246, 1381, 1737, 1828, 2106
MboI GATC 9 cut(s) 1027, 1069, 1180, 1198, 1244, 1379, 1735, 1826, 2104
MfeI CAATTG 2 cut(s) 1014, 1316
MflI RGATCY 4 cut(s) 1198, 1244, 1379, 1826
MhlI GDGCHC 5 cut(s) 305, 566, 799, 1136, 1337
MlsI TGGCCA 3 cut(s) 1272, 1937, 2010
MluNI TGGCCA 3 cut(s) 1272, 1937, 2010
MlyI GAGTC 4 cut(s) 758, 866, 1447, 1459
MmeI TCCRAC 2 cut(s) 589, 1954
Mox20I TGGCCA 3 cut(s) 1272, 1937, 2010
Mph1103I ATGCAT 1 cut(s) 1917
MroXI GAANNNNTTC 1 cut(s) 1038
MscI TGGCCA 3 cut(s) 1272, 1937, 2010
MseI TTAA 4 cut(s) 251, 257, 534, 1836
MslI CAYNNNNRTG 3 cut(s) 569, 1188, 2031
Msp20I TGGCCA 3 cut(s) 1272, 1937, 2010
MspA1I CMGCKG 4 cut(s) 52, 308, 320, 1802
MspCI CTTAAG 1 cut(s) 533
MspI CCGG 1 cut(s) 1868
MspR9I CCNGG 5 cut(s) 867, 1374, 1868, 2007, 2198
MunI CAATTG 2 cut(s) 1014, 1316
Mva1269I GAATGC 2 cut(s) 552, 1675
MvaI CCWGG 4 cut(s) 867, 1374, 2007, 2198
MvnI CGCG 1 cut(s) 1455
NciI CCSGG 1 cut(s) 1868
NcoI CCATGG 2 cut(s) 511, 916
NdeII GATC 9 cut(s) 1027, 1069, 1180, 1198, 1244, 1379, 1735, 1826, 2104
NlaIV GGNNCC 7 cut(s) 302, 498, 1097, 1336, 1572, 1888, 2004
NmuCI GTSAC 5 cut(s) 349, 1043, 1400, 1442, 1464
NruI TCGCGA 1 cut(s) 1455
NsiI ATGCAT 1 cut(s) 1917
NspI RCATGY 1 cut(s) 203
OliI CACNNNNGTG 1 cut(s) 569
PagI TCATGA 1 cut(s) 949
PaqCI CACCTGC 1 cut(s) 367
PceI AGGCCT 2 cut(s) 110, 1477
PcsI WCGNNNNNNNCGW 1 cut(s) 1048
PctI GAATGC 2 cut(s) 552, 1675
PdmI GAANNNNTTC 1 cut(s) 1038
PfeI GAWTC 4 cut(s) 580, 902, 1307, 1771
PflFI GACNNNGTC 1 cut(s) 1951
PflMI CCANNNNNTGG 1 cut(s) 665
PfoI TCCNGGA 1 cut(s) 865
PleI GAGTC 4 cut(s) 758, 865, 1446, 1458
PpsI GAGTC 4 cut(s) 758, 865, 1446, 1458
PshAI GACNNNNGTC 1 cut(s) 1449
Psp6I CCWGG 4 cut(s) 865, 1372, 2005, 2196
PspFI CCCAGC 2 cut(s) 304, 499
PspGI CCWGG 4 cut(s) 865, 1372, 2005, 2196
PspN4I GGNNCC 7 cut(s) 302, 498, 1097, 1336, 1572, 1888, 2004
PspPI GGNCC 7 cut(s) 323, 461, 496, 1096, 1751, 1865, 2083
PstI CTGCAG 2 cut(s) 57, 1807
PstNI CAGNNNCTG 2 cut(s) 1811, 2183
PsuI RGATCY 4 cut(s) 1198, 1244, 1379, 1826
PsyI GACNNNGTC 1 cut(s) 1951
PvuII CAGCTG 4 cut(s) 52, 308, 320, 1802
RruI TCGCGA 1 cut(s) 1455
RsaI GTAC 3 cut(s) 209, 517, 690
RsaNI GTAC 3 cut(s) 208, 516, 689
RseI CAYNNNNRTG 3 cut(s) 569, 1188, 2031
SaqAI TTAA 4 cut(s) 251, 257, 534, 1836
Sau3AI GATC 9 cut(s) 1027, 1069, 1180, 1198, 1244, 1379, 1735, 1826, 2104
Sau96I GGNCC 7 cut(s) 323, 461, 496, 1096, 1751, 1865, 2083
SchI GAGTC 4 cut(s) 758, 866, 1447, 1459
ScrFI CCNGG 5 cut(s) 867, 1374, 1868, 2007, 2198
SduI GDGCHC 5 cut(s) 305, 566, 799, 1136, 1337
SfaNI GCATC 6 cut(s) 283, 1065, 1648, 1902, 1957, 2170
SfcI CTRYAG 3 cut(s) 53, 768, 1803
SinI GGWCC 4 cut(s) 323, 461, 1096, 2083
SmiMI CAYNNNNRTG 3 cut(s) 569, 1188, 2031
SmlI CTYRAG 5 cut(s) 382, 533, 567, 2078, 2093
SmoI CTYRAG 5 cut(s) 382, 533, 567, 2078, 2093
SpeI ACTAGT 2 cut(s) 476, 691
SseBI AGGCCT 2 cut(s) 110, 1477
SsiI CCGC 2 cut(s) 26, 32
SspMI CTAG 6 cut(s) 216, 477, 692, 699, 1127, 2042
StuI AGGCCT 2 cut(s) 110, 1477
StyD4I CCNGG 5 cut(s) 865, 1372, 1866, 2005, 2196
StyI CCWWGG 5 cut(s) 215, 511, 916, 1495, 1684
TaaI ACNGT 4 cut(s) 194, 349, 995, 1922
TaiI ACGT 1 cut(s) 1633
TaqI TCGA 2 cut(s) 1030, 1507
TatI WGTACW 2 cut(s) 207, 688
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 4 cut(s) 580, 902, 1307, 1771
Tru1I TTAA 4 cut(s) 251, 257, 534, 1836
Tru9I TTAA 4 cut(s) 251, 257, 534, 1836
TscAI CASTG 2 cut(s) 199, 1969
TseFI GTSAC 5 cut(s) 349, 1043, 1400, 1442, 1464
Tsp45I GTSAC 5 cut(s) 349, 1043, 1400, 1442, 1464
TspDTI ATGAA 7 cut(s) 590, 770, 906, 1101, 1614, 2001, 2085
TspGWI ACGGA 1 cut(s) 969
TspRI CASTG 2 cut(s) 199, 1969
Tth111I GACNNNGTC 1 cut(s) 1951
Van91I CCANNNNNTGG 1 cut(s) 665
Vha464I CTTAAG 1 cut(s) 533
VneI GTGCAC 1 cut(s) 562
VpaK11BI GGWCC 4 cut(s) 323, 461, 1096, 2083
XagI CCTNNNNNAGG 2 cut(s) 115, 2201
XapI RAATTY 3 cut(s) 253, 967, 1558
XceI RCATGY 1 cut(s) 203
XmaJI CCTAGG 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 135
XmnI GAANNNNTTC 1 cut(s) 1038
XspI CTAG 6 cut(s) 216, 477, 692, 699, 1127, 2042
Zsp2I ATGCAT 1 cut(s) 1917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.