MD16G1008200.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0013265
Physical Location & Seq
Forward (+)
606822 .. 610498
3677 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1008200.v1.1.491

Sequence Viewer

Length: 2193 bp
ATGGTAGTCGGCGCACAACCACAGCAGCAGCAGCAGCTACAACAGAAACCGCCGCAGCAGCCGGAAACTTCGGCCGAAGAGGAGGCCTTGAAGAGGAACACCGATTGCGTCTACTTTCTCGCCTCGCCTCTTACCTGCAAAAAGGGAAGTGAATGCGAATATAGACACAGTGAGTATGCCCGGGTCAACCCCAGGGATTGCTGGTACTGGTTGAATGGCAGTTGCTTGAATTTGAAATGCGCATTTCGGCATCCACCGCTTGATGGCTTGTTAGGAAGCCCGGCAGCAAATTCTGCTGGACCTTCCTTGCCTCTATCACATCCTGTGGCTACGTCTACAACGCCTGCAATTCATGCTGCTTATAACCCAAGTAAACAAGCAGTCCCCTGTATTTTCTTCCAAAAGGGGCAATGTTTAAAGGGTGACAGATGTGCCTTCTCTCATGGACCAAATCCTATGGCTAGTAGTAAAGTTCTACAGGCACCAGCTGCTGCCCACGGTACTGAGCCTTCAGGTCTTAAGAAGGCCTTCGGTGGCCTTCAAAAGTGCACTCAAGAGTTGAAGGTTCCCATGGTAAGTGCCATGAAGTCTGTTGGATTGCCTCCTGAAGCCAAACCTGCTCCAAAAATTCCAACTGCTCCAATTAGAAATGGAGTTAGCATTGAGAGGAATGTATCATCAACTAAAGCATTGGATGATGAGGCTCTCAGATACAAGGCAACAAGTGTTCCGCCTGTTATCAACGGAGGCTCTACAAGTCAGGCCAATCATTTGCTTCAGGCTCATGTTTCAGACGATCATGGTTTTCAAAATGGGAAGGATGCTGATGAGCATTTGAGGGAGTCTTCTCCTGGATTTGATGTTCTTGTAGATGATGAGCACGGAGATTCTGATTACTACCACGGCGAAGAACGGTTTGGAAGAAGAAGAGGTCATGAGGGAAGGAACTTGAATTCTGTGAACGAATATGATTTGGACCGTCCCGTTGATCACACTTCAATGGCTGATGTCGATCGAGAAAGGTTTTGTGACCCATATGATCCTTATGATCGCATGCAAGGGCAGTACGCATGGGACCAGCATAGGGTTTCATCTGAGAGACAATTAGTGGGTCCTGCTCGTCTTGAGAGGAGGGGTTATCACAAATCTGAGAGTCCGGAGAACATTGCTGAGTTAGATCTGCGACATCGTTTATCCAAGCATAGGAGGGTAAACGGTCTGAGAACCATTGTCAGCCATGATTATGCAGTGGACGGCCATGTTGAGGAGCGGAACAACCGTCCTCGTAGGGATTCACAGCAGTTGCCCCCACACGAGGGCTCCTGTAGTAGTCGTCTTCATGGTAGAATAAAGATTCCAGGCGGGTCTTCTCCCGTCAATGGTAGTGACTTGCGCCAAGAAAGGGAAGTTGACAGAGCTAGAAGTAGAGGCAGATTGTCACCCGGGAGGCCACAGATATCCTCTCATCAAGGAAGGCTTAGAGACAGAATAAAAGGAAGGGTAGAAGAGGACTACTCTAATGAGAGGAGAAATTTTGGCGCTTCTCGTGTTAGGGGAGAGATAATGGATGATCGAGGTGATGACTTTTCTCGTCCAAAGCGTCTTCCAGAGCTGAAAGTTGTGAAAGATGCAGAAAATAAGGAGCAATCTTACCTTGGAAAACGGAAAAGTGTGATGGATAATTATCAACAAGCGGAAGGTGATCTGTCATTTGAAGGGCCAAAGCCTCTCAGTGAAATTCTCAGGAGGAAGAGAGAAGCTGAAGCAGCAGCTTCTGGAAGCAGGAAATCATCTGCCCACAATAAACGAGGCAATAATAATCAGAGAGAAAGCAGGGAGAGCGATCCAGGCGACTCCCAGACTGCGGTTACAGAGGTGAATAACAGTCTGCCCACTGCGGCGAAGGAAGAGCCCAAGTTGGCAACGGCCGATGCGGTTGGAACTGAAGATGAGAAAATTGACGTGGTTCATGGTCAGTCTTCAGAAGGACATGAGGCTGAAGAGGGTATGATATATGAGGAGGAAAACGAAATCGAAGGTGAAGATCAGAGAGAAGGAGAGTATGATTACGAGCAGGGGGACGAGGGTGACTATAATTATGAAGGTGAAAATGCAGAGGGCGAAGAGGAATACCTGGAAGAAGACGAAGACGGGGATGACTTTGCTAAGAAGATTGGTGTCGTGTTTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH_2 zf-CCCH_3

Protein Analysis

731

Amino Acids

81.36

Weight (kDa)

5.62

Isoelectric Point (pI)

57.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_3 PF15663 31 - 85 4.5e-10 Zinc-finger containing family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02160
fragaria_vesca FvH4_5g18690 FvH4_5g18690
malus_domestica MD16G1008200.v1.1
prunus_persica Prupe.1G342700_v2.0.a1
pyrus_communis pycom13g00840 pycom16g00800 pycom16g00810
rosa_chinensis RchiOBHm_Chr7g0176801
rosa_laevigata RLG00000005584
rosa_multiflora Rmu_sc0005162.1_g000002
rosa_roxburghii Rroxscaffold_3G00276400
rosa_rugosa Rorug06G0401100
rosa_samantha Rh7AG000100 Rh7BG000300 Rh7CG000100 Rh7DG000400
rosa_wichuraiana Rw7G000010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
Acc16I TGCGCA 1 cut(s) 241
Acc36I ACCTGC 2 cut(s) 143, 625
AccB1I GGYRCC 1 cut(s) 481
AccBSI CCGCTC 1 cut(s) 1270
AccI GTMKAC 2 cut(s) 111, 335
AccIII TCCGGA 1 cut(s) 1156
AclWI GGATC 2 cut(s) 1034, 1838
AcoI YGGCCR 3 cut(s) 72, 1255, 1926
AcsI RAATTY 6 cut(s) 229, 289, 627, 952, 1531, 1737
AcuI CTGAAG 7 cut(s) 495, 627, 761, 1782, 1965, 1965, 2019
AfaI GTAC 3 cut(s) 206, 502, 1067
AflII CTTAAG 1 cut(s) 518
AjiI CACGTC 1 cut(s) 1963
AjnI CCWGG 5 cut(s) 191, 850, 1357, 1846, 2133
AjuI GAANNNNNNNTTGG 2 cut(s) 900, 932
AloI GAACNNNNNNTCC 2 cut(s) 846, 878
AluBI AGCT 6 cut(s) 37, 488, 1418, 1612, 1760, 1772
AluI AGCT 6 cut(s) 37, 488, 1418, 1612, 1760, 1772
Alw21I GWGCWC 2 cut(s) 551, 882
Alw26I GTCTC 2 cut(s) 1093, 1476
Alw44I GTGCAC 1 cut(s) 547
AlwI GGATC 2 cut(s) 1034, 1838
AlwNI CAGNNNCTG 2 cut(s) 491, 1775
Ama87I CYCGRG 2 cut(s) 180, 1442
Aor13HI TCCGGA 1 cut(s) 1156
AoxI GGCC 9 cut(s) 72, 84, 525, 535, 762, 1255, 1448, 1718, 1926
ApaLI GTGCAC 1 cut(s) 547
ApoI RAATTY 6 cut(s) 229, 289, 627, 952, 1531, 1737
Asp700I GAANNNNTTC 1 cut(s) 527
AspLEI GCGC 4 cut(s) 14, 242, 1395, 1541
AspS9I GGNCC 6 cut(s) 299, 446, 976, 1075, 1112, 1718
AsuC2I CCSGG 5 cut(s) 181, 182, 281, 1443, 1444
AsuHPI GGTGA 8 cut(s) 434, 1431, 1589, 1712, 1888, 2051, 2099, 2117
AvaI CYCGRG 2 cut(s) 180, 1442
AvaII GGWCC 5 cut(s) 299, 446, 976, 1075, 1112
BaeGI GKGCMC 1 cut(s) 551
BanI GGYRCC 1 cut(s) 481
BanII GRGCYC 2 cut(s) 1322, 1914
BarI GAAGNNNNNNTAC 2 cut(s) 493, 525
BauI CACGAG 2 cut(s) 1313, 1545
BbsI GAAGAC 7 cut(s) 837, 1328, 1359, 1595, 1971, 2148, 2154
Bbv12I GWGCWC 2 cut(s) 551, 882
BccI CCATC 2 cut(s) 257, 1669
BceAI ACGGC 3 cut(s) 919, 1270, 1941
BciT130I CCWGG 5 cut(s) 193, 852, 1359, 1848, 2135
BclI TGATCA 1 cut(s) 988
BcnI CCSGG 5 cut(s) 181, 182, 281, 1443, 1444
BcoDI GTCTC 2 cut(s) 1093, 1476
BfaI CTAG 2 cut(s) 462, 1419
BfmI CTRYAG 2 cut(s) 476, 1324
BfoI RGCGCY 1 cut(s) 1542
BfrI CTTAAG 1 cut(s) 518
BfuAI ACCTGC 2 cut(s) 143, 625
BglII AGATCT 1 cut(s) 1177
Bme18I GGWCC 5 cut(s) 299, 446, 976, 1075, 1112
BmeT110I CYCGRG 2 cut(s) 180, 1442
BmgBI CACGTC 1 cut(s) 1963
BmgT120I GGNCC 6 cut(s) 299, 446, 976, 1075, 1112, 1718
BmiI GGNNCC 5 cut(s) 483, 567, 1076, 1113, 1321
BmsI GCATC 4 cut(s) 259, 811, 1618, 1921
BpiI GAAGAC 7 cut(s) 837, 1328, 1359, 1595, 1971, 2148, 2154
BplI GAGNNNNNCTC 2 cut(s) 1499, 1531
BpuEI CTTGAG 2 cut(s) 537, 1145
BpuMI CCSGG 5 cut(s) 181, 182, 281, 1443, 1444
BsaBI GATNNNNATC 2 cut(s) 1011, 1683
BsaJI CCNNGG 8 cut(s) 180, 191, 192, 496, 570, 901, 1442, 1654
BsaWI WCCGGW 1 cut(s) 1156
BsaXI ACNNNNNCTCC 2 cut(s) 1304, 1334
Bse1I ACTGG 1 cut(s) 212
Bse3DI GCAATG 2 cut(s) 416, 1164
Bse8I GATNNNNATC 2 cut(s) 1011, 1683
BseAI TCCGGA 1 cut(s) 1156
BseBI CCWGG 5 cut(s) 193, 852, 1359, 1848, 2135
BseDI CCNNGG 8 cut(s) 180, 191, 192, 496, 570, 901, 1442, 1654
BseGI GGATG 6 cut(s) 250, 319, 700, 826, 1573, 2161
BseJI GATNNNNATC 2 cut(s) 1011, 1683
BseMI GCAATG 2 cut(s) 416, 1164
BseMII CTCAG 8 cut(s) 495, 721, 1086, 1140, 1161, 1211, 1744, 1756
BseNI ACTGG 1 cut(s) 212
BseRI GAGGAG 5 cut(s) 95, 1144, 1280, 1540, 2033
BseSI GKGCMC 1 cut(s) 551
BseX3I CGGCCG 2 cut(s) 72, 1926
Bsh1285I CGRYCG 3 cut(s) 75, 1015, 1929
BshFI GGCC 9 cut(s) 74, 86, 527, 537, 764, 1257, 1450, 1720, 1928
BshNI GGYRCC 1 cut(s) 481
BsiEI CGRYCG 3 cut(s) 75, 1015, 1929
BsiHKAI GWGCWC 2 cut(s) 551, 882
BsiHKCI CYCGRG 2 cut(s) 180, 1442
BsiSI CCGG 5 cut(s) 62, 181, 281, 1157, 1443
BslFI GGGAC 4 cut(s) 368, 966, 1088, 2093
BsmAI GTCTC 2 cut(s) 1093, 1476
BsmFI GGGAC 4 cut(s) 368, 966, 1088, 2093
BsmI GAATGC 1 cut(s) 158
BsnI GGCC 9 cut(s) 74, 86, 527, 537, 764, 1257, 1450, 1720, 1928
BsoBI CYCGRG 2 cut(s) 180, 1442
Bsp1286I GDGCHC 4 cut(s) 551, 882, 1322, 1914
Bsp13I TCCGGA 1 cut(s) 1156
Bsp19I CCATGG 1 cut(s) 570
BspANI GGCC 9 cut(s) 74, 86, 527, 537, 764, 1257, 1450, 1720, 1928
BspCNI CTCAG 8 cut(s) 496, 720, 1087, 1141, 1162, 1212, 1743, 1755
BspEI TCCGGA 1 cut(s) 1156
BspHI TCATGA 1 cut(s) 934
BspLI GGNNCC 5 cut(s) 483, 567, 1076, 1113, 1321
BspMI ACCTGC 2 cut(s) 143, 625
BspPI GGATC 2 cut(s) 1034, 1838
BspQI GCTCTTC 1 cut(s) 1902
BspT107I GGYRCC 1 cut(s) 481
BspTI CTTAAG 1 cut(s) 518
BsrBI CCGCTC 1 cut(s) 1270
BsrDI GCAATG 2 cut(s) 416, 1164
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 8 cut(s) 180, 191, 192, 496, 570, 901, 1442, 1654
BssSI CACGAG 2 cut(s) 1313, 1545
BssT1I CCWWGG 2 cut(s) 570, 1654
Bst2BI CACGAG 2 cut(s) 1313, 1545
Bst2UI CCWGG 5 cut(s) 193, 852, 1359, 1848, 2135
Bst4CI ACNGT 7 cut(s) 170, 500, 915, 980, 1217, 1280, 1886
Bst6I CTCTTC 8 cut(s) 72, 86, 922, 1500, 1745, 1902, 1995, 2118
BstAFI CTTAAG 1 cut(s) 518
BstAPI GCANNNNNTGC 3 cut(s) 293, 353, 488
BstC8I GCNNGC 2 cut(s) 345, 1055
BstDSI CCRYGG 3 cut(s) 496, 570, 901
BstENI CCTNNNNNAGG 1 cut(s) 91
BstF5I GGATG 6 cut(s) 250, 319, 700, 826, 1573, 2161
BstH2I RGCGCY 1 cut(s) 1542
BstHHI GCGC 4 cut(s) 14, 242, 1395, 1541
BstMAI GTCTC 2 cut(s) 1093, 1476
BstMCI CGRYCG 3 cut(s) 75, 1015, 1929
BstNI CCWGG 5 cut(s) 193, 852, 1359, 1848, 2135
BstNSI RCATGY 1 cut(s) 1057
BstSFI CTRYAG 2 cut(s) 476, 1324
BstSLI GKGCMC 1 cut(s) 551
BstV2I GAAGAC 7 cut(s) 837, 1328, 1359, 1595, 1971, 2148, 2154
BstX2I RGATCY 1 cut(s) 1177
BstYI RGATCY 1 cut(s) 1177
BstZI CGGCCG 2 cut(s) 72, 1926
BsuRI GGCC 9 cut(s) 74, 86, 527, 537, 764, 1257, 1450, 1720, 1928
BtgI CCRYGG 3 cut(s) 496, 570, 901
BtrI CACGTC 1 cut(s) 1963
BtsCI GGATG 6 cut(s) 250, 319, 700, 826, 1573, 2161
BtsI GCAGTG 2 cut(s) 1254, 1893
BtsIMutI CAGTG 4 cut(s) 175, 1254, 1738, 1893
BveI ACCTGC 2 cut(s) 143, 625
Cac8I GCNNGC 2 cut(s) 345, 1055
CaiI CAGNNNCTG 2 cut(s) 491, 1775
CciI TCATGA 1 cut(s) 934
CfoI GCGC 4 cut(s) 14, 242, 1395, 1541
Cfr13I GGNCC 6 cut(s) 299, 446, 976, 1075, 1112, 1718
Cfr9I CCCGGG 2 cut(s) 180, 1442
CseI GACGC 2 cut(s) 97, 1589
Csp6I GTAC 3 cut(s) 205, 501, 1066
CviQI GTAC 3 cut(s) 205, 501, 1066
DraI TTTAAA 1 cut(s) 417
EaeI YGGCCR 3 cut(s) 72, 1255, 1926
EagI CGGCCG 2 cut(s) 72, 1926
Eam1104I CTCTTC 8 cut(s) 72, 86, 922, 1500, 1745, 1902, 1995, 2118
EarI CTCTTC 8 cut(s) 72, 86, 922, 1500, 1745, 1902, 1995, 2118
EciI GGCGGA 1 cut(s) 720
EclXI CGGCCG 2 cut(s) 72, 1926
Eco130I CCWWGG 2 cut(s) 570, 1654
Eco147I AGGCCT 2 cut(s) 86, 527
Eco24I GRGCYC 2 cut(s) 1322, 1914
Eco32I GATATC 1 cut(s) 1458
Eco47I GGWCC 5 cut(s) 299, 446, 976, 1075, 1112
Eco52I CGGCCG 2 cut(s) 72, 1926
Eco57I CTGAAG 7 cut(s) 495, 627, 761, 1782, 1965, 1965, 2019
Eco88I CYCGRG 2 cut(s) 180, 1442
EcoNI CCTNNNNNAGG 1 cut(s) 91
EcoO109I RGGNCCY 1 cut(s) 1112
EcoRI GAATTC 1 cut(s) 952
EcoRII CCWGG 5 cut(s) 191, 850, 1357, 1846, 2133
EcoRV GATATC 1 cut(s) 1458
EcoT14I CCWWGG 2 cut(s) 570, 1654
EcoT38I GRGCYC 2 cut(s) 1322, 1914
ErhI CCWWGG 2 cut(s) 570, 1654
FalI AAGNNNNNCTT 4 cut(s) 512, 544, 1461, 1493
FaqI GGGAC 4 cut(s) 368, 966, 1088, 2093
FauI CCCGC 1 cut(s) 1355
FauNDI CATATG 1 cut(s) 1036
FbaI TGATCA 1 cut(s) 988
FblI GTMKAC 2 cut(s) 111, 335
FokI GGATG 6 cut(s) 237, 306, 707, 833, 1580, 2168
FriOI GRGCYC 2 cut(s) 1322, 1914
FspAI RTGCGCAY 1 cut(s) 241
FspBI CTAG 2 cut(s) 462, 1419
FspI TGCGCA 1 cut(s) 241
GlaI GCGC 4 cut(s) 13, 241, 1394, 1540
HaeII RGCGCY 1 cut(s) 1542
HaeIII GGCC 9 cut(s) 74, 86, 527, 537, 764, 1257, 1450, 1720, 1928
HapII CCGG 5 cut(s) 62, 181, 281, 1157, 1443
HgaI GACGC 2 cut(s) 97, 1589
HhaI GCGC 4 cut(s) 14, 242, 1395, 1541
Hin6I GCGC 4 cut(s) 12, 240, 1393, 1539
HinP1I GCGC 4 cut(s) 12, 240, 1393, 1539
HincII GTYRAC 2 cut(s) 187, 1411
HindII GTYRAC 2 cut(s) 187, 1411
HinfI GANTC 6 cut(s) 842, 887, 1153, 1292, 1354, 1853
HpaII CCGG 5 cut(s) 62, 181, 281, 1157, 1443
HphI GGTGA 8 cut(s) 434, 1431, 1589, 1712, 1888, 2051, 2099, 2117
Hpy166II GTNNAC 9 cut(s) 112, 187, 336, 374, 549, 961, 1213, 1252, 1411
Hpy188I TCNGA 9 cut(s) 710, 793, 892, 1096, 1150, 1221, 1824, 1984, 2049
Hpy8I GTNNAC 9 cut(s) 112, 187, 336, 374, 549, 961, 1213, 1252, 1411
HpyCH4III ACNGT 7 cut(s) 170, 500, 915, 980, 1217, 1280, 1886
HpyCH4IV ACGT 2 cut(s) 332, 1962
HpyCH4V TGCA 7 cut(s) 138, 347, 549, 1057, 1247, 1631, 2114
HpySE526I ACGT 2 cut(s) 332, 1962
HspAI GCGC 4 cut(s) 12, 240, 1393, 1539
Kpn2I TCCGGA 1 cut(s) 1156
Ksp22I TGATCA 1 cut(s) 988
LguI GCTCTTC 1 cut(s) 1902
LmnI GCTCC 5 cut(s) 625, 643, 1267, 1325, 1642
LweI GCATC 4 cut(s) 259, 811, 1618, 1921
MaeI CTAG 2 cut(s) 462, 1419
MaeII ACGT 2 cut(s) 332, 1962
MaeIII GTNAC 6 cut(s) 422, 1028, 1385, 1437, 1867, 2087
MbiI CCGCTC 1 cut(s) 1270
MflI RGATCY 1 cut(s) 1177
MhlI GDGCHC 4 cut(s) 551, 882, 1322, 1914
MlyI GAGTC 3 cut(s) 851, 1162, 1847
MmeI TCCRAC 3 cut(s) 574, 656, 1918
MroI TCCGGA 1 cut(s) 1156
MroXI GAANNNNTTC 1 cut(s) 527
MseI TTAA 2 cut(s) 416, 519
MslI CAYNNNNRTG 2 cut(s) 998, 1242
MspA1I CMGCKG 1 cut(s) 488
MspCI CTTAAG 1 cut(s) 518
MspI CCGG 5 cut(s) 62, 181, 281, 1157, 1443
Mva1269I GAATGC 1 cut(s) 158
MvaI CCWGG 5 cut(s) 193, 852, 1359, 1848, 2135
NciI CCSGG 5 cut(s) 181, 182, 281, 1443, 1444
NcoI CCATGG 1 cut(s) 570
NdeI CATATG 1 cut(s) 1036
NlaIV GGNNCC 5 cut(s) 483, 567, 1076, 1113, 1321
NmuCI GTSAC 5 cut(s) 422, 1028, 1385, 1437, 2087
NsbI TGCGCA 1 cut(s) 241
NspI RCATGY 1 cut(s) 1057
PaeI GCATGC 1 cut(s) 1057
PagI TCATGA 1 cut(s) 934
PasI CCCWGGG 1 cut(s) 192
PceI AGGCCT 2 cut(s) 86, 527
PciSI GCTCTTC 1 cut(s) 1902
PcsI WCGNNNNNNNCGW 1 cut(s) 1597
PctI GAATGC 1 cut(s) 158
PdmI GAANNNNTTC 1 cut(s) 527
PfeI GAWTC 3 cut(s) 887, 1292, 1354
PfoI TCCNGGA 1 cut(s) 850
Ple19I CGATCG 1 cut(s) 1015
PleI GAGTC 3 cut(s) 850, 1161, 1847
PpsI GAGTC 3 cut(s) 850, 1161, 1847
PpuMI RGGWCCY 1 cut(s) 1112
PsiI TTATAA 1 cut(s) 363
Psp5II RGGWCCY 1 cut(s) 1112
Psp6I CCWGG 5 cut(s) 191, 850, 1357, 1846, 2133
PspGI CCWGG 5 cut(s) 191, 850, 1357, 1846, 2133
PspN4I GGNNCC 5 cut(s) 483, 567, 1076, 1113, 1321
PspPI GGNCC 6 cut(s) 299, 446, 976, 1075, 1112, 1718
PspPPI RGGWCCY 1 cut(s) 1112
PstNI CAGNNNCTG 2 cut(s) 491, 1775
PsuI RGATCY 1 cut(s) 1177
PvuI CGATCG 1 cut(s) 1015
PvuII CAGCTG 1 cut(s) 488
RsaI GTAC 3 cut(s) 206, 502, 1067
RsaNI GTAC 3 cut(s) 205, 501, 1066
RseI CAYNNNNRTG 2 cut(s) 998, 1242
SapI GCTCTTC 1 cut(s) 1902
SaqAI TTAA 2 cut(s) 416, 519
Sau96I GGNCC 6 cut(s) 299, 446, 976, 1075, 1112, 1718
SchI GAGTC 3 cut(s) 851, 1162, 1847
SduI GDGCHC 4 cut(s) 551, 882, 1322, 1914
SfaNI GCATC 4 cut(s) 259, 811, 1618, 1921
SfcI CTRYAG 2 cut(s) 476, 1324
SinI GGWCC 5 cut(s) 299, 446, 976, 1075, 1112
SmaI CCCGGG 2 cut(s) 182, 1444
SmiMI CAYNNNNRTG 2 cut(s) 998, 1242
SmlI CTYRAG 3 cut(s) 518, 552, 1124
SmoI CTYRAG 3 cut(s) 518, 552, 1124
SphI GCATGC 1 cut(s) 1057
SseBI AGGCCT 2 cut(s) 86, 527
SspMI CTAG 2 cut(s) 462, 1419
StuI AGGCCT 2 cut(s) 86, 527
StyI CCWWGG 2 cut(s) 570, 1654
TaaI ACNGT 7 cut(s) 170, 500, 915, 980, 1217, 1280, 1886
TaiI ACGT 2 cut(s) 335, 1965
TaqI TCGA 4 cut(s) 1011, 1015, 1573, 2034
TauI GCSGC 2 cut(s) 55, 1901
TfiI GAWTC 3 cut(s) 887, 1292, 1354
Tru1I TTAA 2 cut(s) 416, 519
Tru9I TTAA 2 cut(s) 416, 519
TscAI CASTG 4 cut(s) 175, 1254, 1738, 1900
TseFI GTSAC 5 cut(s) 422, 1028, 1385, 1437, 2087
Tsp45I GTSAC 5 cut(s) 422, 1028, 1385, 1437, 2087
TspDTI ATGAA 6 cut(s) 341, 599, 1080, 1328, 1958, 2115
TspGWI ACGGA 3 cut(s) 759, 897, 1678
TspMI CCCGGG 2 cut(s) 180, 1442
TspRI CASTG 4 cut(s) 175, 1254, 1738, 1900
Vha464I CTTAAG 1 cut(s) 518
VneI GTGCAC 1 cut(s) 547
VpaK11BI GGWCC 5 cut(s) 299, 446, 976, 1075, 1112
XagI CCTNNNNNAGG 1 cut(s) 91
XapI RAATTY 6 cut(s) 229, 289, 627, 952, 1531, 1737
XceI RCATGY 1 cut(s) 1057
XmaI CCCGGG 2 cut(s) 180, 1442
XmiI GTMKAC 2 cut(s) 111, 335
XmnI GAANNNNTTC 1 cut(s) 527
XspI CTAG 2 cut(s) 462, 1419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.