Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007902

Physical Location & Seq

Genomic Coordinates Reverse (-)

10972107 .. 10976091

Gene Structure 3985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGAGGACATTGAAGCGGGAGATGATCGAAGATGTTGCTATGATAGGGGGATTGGTAGGGGTGCAATTTGTGTATGCTGGGAATTCTATATTGCTGAGCTATTTCATGTCTTTTGGGCTTAACCCTCTCACTATTGTTATCTACTCCAGCTTTGCTACCTTCATCATCCTCGCTCCCATTGCTTACTGTTTTGAAAGGAGTAAATGGCCGAGCACAATCAGCCTCAAGTTTGTGATTCAGTTGGTTTTGATCGCCTTTGGAGGAGTAACTTTGTTCCAGGTACTGTTTCTAAAGGGGATCGTGCTTACTTCACCAGCAATGGCAACAGCCATGCCTAATCTTGCTCCGGGACTTATATTTGTCATCGCTTGTACTGTTAGATTGGAGAGAATGAAAATTAGTTGTCTGTACAGCAAAGTGAAGATTCTAGGCACAATGTTGTGTGTGGTAGGCGCTCTCGTAATGAGCGTAATGCAAAGCACCACTTCCACCCCAGCAACAAAGTTTCAGCTTCAAGCTCATTCTCCTGATGTGATCTTCGATAAGCAGAAGCTTATCGGGTGCTTGTATCTCCTTGCTGCCGTGTTTGTATTGTCCAGCAATATTGTCTTGCAGGCTACAACATTGGGTGATTTTCCTGCACCTATTTCCTTGTGTGCCATAACATCTTTCATAGGGGTGTTTATAACTGCTGCTGTACAATTCATTCAAGATCACAAAATTGAAACTGGTTGGCCCCTTGTCAGTGCTCGAGACTTGATTGGCTTTTCCTTACTTGCAGGTATAGTGAGTGGAGCTTGTATTAGCTTCAATGGGTGGGCAATGAAGAAGAGAGGGCCAGTTTTGGTGTCAATGTTTAGCCCCATTGGAACTGTCTGCTCAGTTATTCTCTCAGTTATCACCTTAGGAGAATCCATCAGTGTTGGAAGCCTTGCTGGCATGTGCCTCATGTTTACTGGGCTCTACTTTTTCCTATGGGCTAAAGGAAAGGAAGGATTTCCAGATGGGATTGACTTGGAAAGTGAGTTTGATGCAGAGAAGCCTCTTTTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

352

Amino Acids

37.83

Weight (kDa)

8.53

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	18 - 156	1.4e-06	EamA-like transporter family
EamA	PF00892	186 - 325	3.9e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47470 AT5G47470 AT5G47470
fragaria_vesca	FvH4_5g19040
malus_domestica	MD04G1063300.v1.1 MD06G1057600.v1.1
prunus_persica	Prupe.5G068400_v2.0.a1
pyrus_communis	pycom04g05700
rosa_chinensis	RchiOBHm_Chr3g0450311 RchiOBHm_Chr6g0263851 RchiOBHm_Chr7g0203481
rosa_laevigata	RLG00000003526
rosa_multiflora	Rmu_sc0011994.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069950 Rroxscaffold_3G00253780 Rroxscaffold_7G00182050
rosa_rugosa	Rorug07G0076200
rosa_samantha	Rh6BG122400 Rh7AG205700 Rh7BG205500 Rh7CG218400 Rh7DG212900 Rh7DG403300
rosa_wichuraiana	Rw7G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	686
Acc36I	ACCTGC	1 cut(s)	770
AciI	CCGC	1 cut(s)	16
AclWI	GGATC	1 cut(s)	305
AcoI	YGGCCR	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	82
AfaI	GTAC	4 cut(s)	282, 373, 410, 699
AgsI	TTSAA	6 cut(s)	13, 194, 515, 710, 725, 811
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	7 cut(s)	99, 150, 511, 518, 553, 797, 807
AluI	AGCT	7 cut(s)	99, 150, 511, 518, 553, 797, 807
Alw21I	GWGCWC	2 cut(s)	215, 751
Alw26I	GTCTC	1 cut(s)	747
AlwI	GGATC	1 cut(s)	305
AlwNI	CAGNNNCTG	1 cut(s)	283
Ama87I	CYCGRG	1 cut(s)	750
AoxI	GGCC	3 cut(s)	206, 734, 836
ApeKI	GCWGC	2 cut(s)	578, 692
ApoI	RAATTY	1 cut(s)	82
Asp700I	GAANNNNTTC	1 cut(s)	996
AspLEI	GCGC	1 cut(s)	455
AspS9I	GGNCC	2 cut(s)	735, 836
AsuC2I	CCSGG	1 cut(s)	348
AsuHPI	GGTGA	3 cut(s)	303, 641, 892
AvaI	CYCGRG	1 cut(s)	750
AxyI	CCTNAGG	1 cut(s)	904
BanII	GRGCYC	1 cut(s)	963
Bbv12I	GWGCWC	2 cut(s)	215, 751
BbvI	GCAGC	2 cut(s)	565, 679
BccI	CCATC	2 cut(s)	923, 998
BceAI	ACGGC	1 cut(s)	566
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BciT130I	CCWGG	1 cut(s)	278
BcnI	CCSGG	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	747
BfaI	CTAG	1 cut(s)	428
BfoI	RGCGCY	1 cut(s)	456
BfuAI	ACCTGC	1 cut(s)	770
BglI	GCCNNNNNGGC	1 cut(s)	936
BisI	GCNGC	2 cut(s)	579, 693
BlpI	GCTNAGC	1 cut(s)	95
BlsI	GCNGC	2 cut(s)	580, 694
Bme1390I	CCNGG	2 cut(s)	278, 348
BmeT110I	CYCGRG	1 cut(s)	750
BmgT120I	GGNCC	2 cut(s)	735, 836
BmiI	GGNNCC	1 cut(s)	737
BmrFI	CCNGG	2 cut(s)	278, 348
BmrI	ACTGGG	1 cut(s)	966
BmsI	GCATC	1 cut(s)	1021
BmuI	ACTGGG	1 cut(s)	966
BpmI	CTGGAG	1 cut(s)	130
Bpu1102I	GCTNAGC	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	209
BpuMI	CCSGG	1 cut(s)	348
Bse1I	ACTGG	3 cut(s)	733, 839, 961
Bse21I	CCTNAGG	1 cut(s)	904
Bse3DI	GCAATG	3 cut(s)	177, 324, 828
BseBI	CCWGG	1 cut(s)	278
BseGI	GGATG	1 cut(s)	165
BseMI	GCAATG	3 cut(s)	177, 324, 828
BseMII	CTCAG	3 cut(s)	86, 894, 906
BseNI	ACTGG	3 cut(s)	733, 839, 961
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	565, 679
BseYI	CCCAGC	2 cut(s)	77, 493
BsgI	GTGCAG	1 cut(s)	624
BshFI	GGCC	3 cut(s)	208, 736, 838
BsiHKAI	GWGCWC	2 cut(s)	215, 751
BsiHKCI	CYCGRG	1 cut(s)	750
BsiSI	CCGG	1 cut(s)	347
BslFI	GGGAC	1 cut(s)	363
BsmAI	GTCTC	1 cut(s)	747
BsmFI	GGGAC	1 cut(s)	363
BsnI	GGCC	3 cut(s)	208, 736, 838
BsoBI	CYCGRG	1 cut(s)	750
Bsp1286I	GDGCHC	3 cut(s)	215, 751, 963
Bsp1407I	TGTACA	2 cut(s)	408, 697
Bsp143I	GATC	5 cut(s)	24, 249, 297, 534, 712
Bsp1720I	GCTNAGC	1 cut(s)	95
BspACI	CCGC	1 cut(s)	16
BspANI	GGCC	3 cut(s)	208, 736, 838
BspCNI	CTCAG	3 cut(s)	87, 893, 905
BspLI	GGNNCC	1 cut(s)	737
BspMI	ACCTGC	1 cut(s)	770
BspPI	GGATC	1 cut(s)	305
BsrDI	GCAATG	3 cut(s)	177, 324, 828
BsrGI	TGTACA	2 cut(s)	408, 697
BsrI	ACTGG	3 cut(s)	733, 839, 961
BssMI	GATC	5 cut(s)	24, 249, 297, 534, 712
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	4 cut(s)	188, 285, 376, 874
Bst6I	CTCTTC	1 cut(s)	824
BstAUI	TGTACA	2 cut(s)	408, 697
BstC8I	GCNNGC	2 cut(s)	615, 937
BstDEI	CTNAG	4 cut(s)	95, 880, 892, 904
BstF5I	GGATG	1 cut(s)	165
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	5 cut(s)	27, 252, 300, 537, 715
BstMAI	GTCTC	1 cut(s)	747
BstMBI	GATC	5 cut(s)	24, 249, 297, 534, 712
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 219, 936
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	943
BstSCI	CCNGG	2 cut(s)	276, 346
BstV1I	GCAGC	2 cut(s)	565, 679
Bsu36I	CCTNAGG	1 cut(s)	904
BsuRI	GGCC	3 cut(s)	208, 736, 838
BtgZI	GCGATG	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	165
BtsIMutI	CAGTG	2 cut(s)	751, 925
BveI	ACCTGC	1 cut(s)	770
Cac8I	GCNNGC	2 cut(s)	615, 937
CaiI	CAGNNNCTG	1 cut(s)	283
CfoI	GCGC	1 cut(s)	455
Cfr13I	GGNCC	2 cut(s)	735, 836
Csp6I	GTAC	4 cut(s)	281, 372, 409, 698
CviAII	CATG	4 cut(s)	106, 331, 940, 949
CviQI	GTAC	4 cut(s)	281, 372, 409, 698
DdeI	CTNAG	4 cut(s)	95, 880, 892, 904
DpnI	GATC	5 cut(s)	26, 251, 299, 536, 714
DpnII	GATC	5 cut(s)	24, 249, 297, 534, 712
EaeI	YGGCCR	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	824
EarI	CTCTTC	1 cut(s)	824
Eco24I	GRGCYC	1 cut(s)	963
Eco81I	CCTNAGG	1 cut(s)	904
Eco88I	CYCGRG	1 cut(s)	750
EcoRI	GAATTC	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	963
FaeI	CATG	4 cut(s)	109, 334, 943, 952
FalI	AAGNNNNNCTT	2 cut(s)	469, 501
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	4 cut(s)	105, 330, 939, 948
FauI	CCCGC	1 cut(s)	9
Fnu4HI	GCNGC	2 cut(s)	579, 693
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	963
Fsp4HI	GCNGC	2 cut(s)	579, 693
FspBI	CTAG	1 cut(s)	428
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	2 cut(s)	579, 693
GsaI	CCCAGC	2 cut(s)	81, 497
GsuI	CTGGAG	1 cut(s)	130
HaeII	RGCGCY	1 cut(s)	456
HaeIII	GGCC	3 cut(s)	208, 736, 838
HapII	CCGG	1 cut(s)	347
HhaI	GCGC	1 cut(s)	455
Hin1II	CATG	4 cut(s)	109, 334, 943, 952
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HindIII	AAGCTT	1 cut(s)	551
HinfI	GANTC	3 cut(s)	235, 424, 911
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	3 cut(s)	303, 641, 892
Hpy166II	GTNNAC	1 cut(s)	954
Hpy188III	TCNNGA	4 cut(s)	527, 710, 752, 1001
Hpy8I	GTNNAC	1 cut(s)	954
HpyAV	CCTTC	2 cut(s)	169, 986
HpyCH4III	ACNGT	4 cut(s)	188, 285, 376, 874
HpyCH4V	TGCA	6 cut(s)	64, 475, 613, 641, 779, 1034
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 219, 936
HpyF3I	CTNAG	4 cut(s)	95, 880, 892, 904
Hsp92II	CATG	4 cut(s)	109, 334, 943, 952
HspAI	GCGC	1 cut(s)	453
Kzo9I	GATC	5 cut(s)	24, 249, 297, 534, 712
LmnI	GCTCC	3 cut(s)	178, 349, 794
Lsp1109I	GCAGC	2 cut(s)	565, 679
LweI	GCATC	1 cut(s)	1021
MaeI	CTAG	1 cut(s)	428
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	5 cut(s)	26, 251, 299, 536, 714
MboI	GATC	5 cut(s)	24, 249, 297, 534, 712
MboII	GAAGA	5 cut(s)	41, 433, 529, 838, 841
MhlI	GDGCHC	3 cut(s)	215, 751, 963
MluCI	AATT	5 cut(s)	65, 82, 396, 701, 720
MmeI	TCCRAC	1 cut(s)	904
MnlI	CCTC	7 cut(s)	135, 179, 233, 254, 827, 956, 1053
MroXI	GAANNNNTTC	1 cut(s)	996
MseI	TTAA	2 cut(s)	120, 1049
MslI	CAYNNNNRTG	1 cut(s)	677
MspI	CCGG	1 cut(s)	347
MspR9I	CCNGG	2 cut(s)	278, 348
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	3 cut(s)	179, 219, 936
NciI	CCSGG	1 cut(s)	348
NdeII	GATC	5 cut(s)	24, 249, 297, 534, 712
NlaIII	CATG	4 cut(s)	109, 334, 943, 952
NlaIV	GGNNCC	1 cut(s)	737
NmeAIII	GCCGAG	1 cut(s)	234
NspI	RCATGY	1 cut(s)	943
PaeR7I	CTCGAG	1 cut(s)	750
PcsI	WCGNNNNNNNCGW	1 cut(s)	465
PdmI	GAANNNNTTC	1 cut(s)	996
PfeI	GAWTC	3 cut(s)	235, 424, 911
PfoI	TCCNGGA	1 cut(s)	346
PkrI	GCNGC	2 cut(s)	580, 694
PsiI	TTATAA	1 cut(s)	686
Psp6I	CCWGG	1 cut(s)	276
PspFI	CCCAGC	2 cut(s)	77, 493
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	737
PspPI	GGNCC	2 cut(s)	735, 836
PstNI	CAGNNNCTG	1 cut(s)	283
RsaI	GTAC	4 cut(s)	282, 373, 410, 699
RsaNI	GTAC	4 cut(s)	281, 372, 409, 698
RseI	CAYNNNNRTG	1 cut(s)	677
SaqAI	TTAA	2 cut(s)	120, 1049
SatI	GCNGC	2 cut(s)	579, 693
Sau3AI	GATC	5 cut(s)	24, 249, 297, 534, 712
Sau96I	GGNCC	2 cut(s)	735, 836
ScrFI	CCNGG	2 cut(s)	278, 348
SduI	GDGCHC	3 cut(s)	215, 751, 963
SfaNI	GCATC	1 cut(s)	1021
Sfr274I	CTCGAG	1 cut(s)	750
SlaI	CTCGAG	1 cut(s)	750
SmiMI	CAYNNNNRTG	1 cut(s)	677
SmlI	CTYRAG	2 cut(s)	224, 750
SmoI	CTYRAG	2 cut(s)	224, 750
Sse9I	AATT	5 cut(s)	65, 82, 396, 701, 720
SsiI	CCGC	1 cut(s)	16
SspI	AATATT	1 cut(s)	604
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	2 cut(s)	276, 346
TaaI	ACNGT	4 cut(s)	188, 285, 376, 874
TaqI	TCGA	3 cut(s)	27, 540, 751
TasI	AATT	5 cut(s)	65, 82, 396, 701, 720
TatI	WGTACW	3 cut(s)	371, 408, 697
TfiI	GAWTC	3 cut(s)	235, 424, 911
Tru1I	TTAA	2 cut(s)	120, 1049
Tru9I	TTAA	2 cut(s)	120, 1049
TscAI	CASTG	2 cut(s)	751, 925
TseI	GCWGC	2 cut(s)	578, 692
TspDTI	ATGAA	6 cut(s)	94, 151, 407, 661, 694, 839
TspRI	CASTG	2 cut(s)	751, 925
XapI	RAATTY	1 cut(s)	82
XceI	RCATGY	1 cut(s)	943
XhoI	CTCGAG	1 cut(s)	750
XmnI	GAANNNNTTC	1 cut(s)	996
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.