Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0007902

Physical Location & Seq

Genomic Coordinates Forward (+)

8840316 .. 8841870

Gene Structure 1555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1057600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGAAAGAAGAAGTGGTAGTAATTTGTTTTCTTGGTTTCTTGTTTTGCAGGTTGACTTTGTTCCAGACATTATTTCTAAAGGGAATCCAGTTTACCTCACCAGCAATGGCAGCAGCCATGCCAAACCTTTCTCCTGGGTTTATTTTCGTCATCGCCTGTACTGTTAGATTGGAGAGAGTGAAAATTAGTTGCCTATACAGCAAAATGAAGATTCTAGGCACAATTCTGTGTGTAGTAGGAGCTATCACACTGAGCGTAATGCCAAGCGCCGCCAGTCCTACCAAAACAGAAGCAGGGCCCCAATTTCGAGCTAGTTCTCCTGAATTTCTCTTTGATAAGCAAAAGATTATTGGTTGCTTGTATCTCCTTGCTGCTGTGTTTGTTTTGTCCAGCAATATTGTCTTGCAGGCTACAACCTTGGGTGATTTTCCTCCACCTATGTCCCTGTGCGCCATAACATCTTTGATAGGAGTGCTTCTAACTGCAGCTGTACAATATGTTCAAGATAACCAAAATAGAAACTGGCTGGCCACTTGTGAGTGCAAGACAATTGATTGGCTTCTCTCTACTGGTGCAGTGAGCGGAGCATGTGTGAGCTTCAACGGATGGGCAATGAAGAAAAGAGGTCCGGTTTTGGTTTCCATGTTTAACCCCATTGGAACAGTCTTCTCAGTTGTTCTCTCAGTTATAACATTGGGAGATGCCATTAGTGTTGGAAGCTTTGCTGGTATGTGCCTCATGTTTACTGGGCTCTACTTCTTCCTATGGGCAAAGGGGAAGGAAGGCTACTTAAATGTGGTTGACTTAGAAAGTGAGTTTGATGCAGAGAAGCCTCTATTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

282

Amino Acids

30.39

Weight (kDa)

8.26

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	117 - 255	2.5e-11	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47470 AT5G47470 AT5G47470
fragaria_vesca	FvH4_5g19040
malus_domestica	MD04G1063300.v1.1 MD06G1057600.v1.1
prunus_persica	Prupe.5G068400_v2.0.a1
pyrus_communis	pycom04g05700
rosa_chinensis	RchiOBHm_Chr3g0450311 RchiOBHm_Chr6g0263851 RchiOBHm_Chr7g0203481
rosa_laevigata	RLG00000003526
rosa_multiflora	Rmu_sc0011994.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069950 Rroxscaffold_3G00253780 Rroxscaffold_7G00182050
rosa_rugosa	Rorug07G0076200
rosa_samantha	Rh6BG122400 Rh7AG205700 Rh7BG205500 Rh7CG218400 Rh7DG212900 Rh7DG403300
rosa_wichuraiana	Rw7G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	689
Acc36I	ACCTGC	1 cut(s)	39
AccBSI	CCGCTC	1 cut(s)	582
AciI	CCGC	2 cut(s)	270, 582
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	1 cut(s)	323
AfaI	GTAC	2 cut(s)	160, 492
AgsI	TTSAA	2 cut(s)	503, 601
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	5 cut(s)	242, 311, 488, 597, 720
AluI	AGCT	5 cut(s)	242, 311, 488, 597, 720
AoxI	GGCC	2 cut(s)	296, 528
ApaI	GGGCCC	1 cut(s)	300
ApeKI	GCWGC	4 cut(s)	110, 113, 371, 485
ApoI	RAATTY	1 cut(s)	323
AspLEI	GCGC	2 cut(s)	269, 452
AspS9I	GGNCC	3 cut(s)	296, 297, 626
AsuHPI	GGTGA	2 cut(s)	90, 434
AvaII	GGWCC	1 cut(s)	626
BaeGI	GKGCMC	1 cut(s)	300
BalI	TGGCCA	1 cut(s)	530
BanII	GRGCYC	2 cut(s)	300, 753
BarI	GAAGNNNNNNTAC	2 cut(s)	770, 802
BbsI	GAAGAC	1 cut(s)	658
BbvI	GCAGC	4 cut(s)	122, 125, 358, 497
BccI	CCATC	1 cut(s)	600
BciT130I	CCWGG	1 cut(s)	135
BfaI	CTAG	2 cut(s)	215, 312
BfmI	CTRYAG	1 cut(s)	483
BfoI	RGCGCY	1 cut(s)	270
BfuAI	ACCTGC	1 cut(s)	39
BisI	GCNGC	5 cut(s)	111, 114, 270, 372, 486
BlsI	GCNGC	5 cut(s)	112, 115, 271, 373, 487
Bme1390I	CCNGG	1 cut(s)	135
Bme18I	GGWCC	1 cut(s)	626
BmgT120I	GGNCC	3 cut(s)	296, 297, 626
BmiI	GGNNCC	2 cut(s)	298, 299
BmrFI	CCNGG	1 cut(s)	135
BmrI	ACTGGG	1 cut(s)	756
BmsI	GCATC	2 cut(s)	691, 811
BmuI	ACTGGG	1 cut(s)	756
BpiI	GAAGAC	1 cut(s)	658
BsaJI	CCNNGG	2 cut(s)	134, 417
BsaWI	WCCGGW	1 cut(s)	628
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bse1I	ACTGG	5 cut(s)	88, 273, 527, 574, 751
Bse3DI	GCAATG	2 cut(s)	111, 618
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	2 cut(s)	134, 417
BseGI	GGATG	1 cut(s)	611
BseMI	GCAATG	2 cut(s)	111, 618
BseMII	CTCAG	3 cut(s)	242, 684, 696
BseNI	ACTGG	5 cut(s)	88, 273, 527, 574, 751
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	4 cut(s)	122, 125, 358, 497
BsgI	GTGCAG	1 cut(s)	594
BshFI	GGCC	2 cut(s)	298, 530
BsiSI	CCGG	1 cut(s)	629
BslFI	GGGAC	1 cut(s)	427
BsmFI	GGGAC	1 cut(s)	427
BsnI	GGCC	2 cut(s)	298, 530
Bsp120I	GGGCCC	1 cut(s)	296
Bsp1286I	GDGCHC	2 cut(s)	300, 753
Bsp1407I	TGTACA	1 cut(s)	490
BspACI	CCGC	2 cut(s)	270, 582
BspANI	GGCC	2 cut(s)	298, 530
BspCNI	CTCAG	3 cut(s)	243, 683, 695
BspLI	GGNNCC	2 cut(s)	298, 299
BspMAI	CTGCAG	1 cut(s)	487
BspMI	ACCTGC	1 cut(s)	39
BsrBI	CCGCTC	1 cut(s)	582
BsrDI	GCAATG	2 cut(s)	111, 618
BsrGI	TGTACA	1 cut(s)	490
BsrI	ACTGG	5 cut(s)	88, 273, 527, 574, 751
BssECI	CCNNGG	2 cut(s)	134, 417
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	2 cut(s)	163, 664
BstAUI	TGTACA	1 cut(s)	490
BstC8I	GCNNGC	2 cut(s)	408, 528
BstDEI	CTNAG	4 cut(s)	251, 670, 682, 805
BstF5I	GGATG	1 cut(s)	611
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	2 cut(s)	269, 452
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 198
BstNI	CCWGG	1 cut(s)	135
BstNSI	RCATGY	1 cut(s)	591
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	483
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	4 cut(s)	122, 125, 358, 497
BstV2I	GAAGAC	1 cut(s)	658
BsuRI	GGCC	2 cut(s)	298, 530
BtgZI	GCGATG	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	611
BtsI	GCAGTG	1 cut(s)	582
BtsIMutI	CAGTG	2 cut(s)	248, 582
BveI	ACCTGC	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	408, 528
CfoI	GCGC	2 cut(s)	269, 452
Cfr13I	GGNCC	3 cut(s)	296, 297, 626
Csp6I	GTAC	2 cut(s)	159, 491
CviAII	CATG	4 cut(s)	118, 588, 643, 739
CviQI	GTAC	2 cut(s)	159, 491
DdeI	CTNAG	4 cut(s)	251, 670, 682, 805
EaeI	YGGCCR	1 cut(s)	528
Eco130I	CCWWGG	1 cut(s)	417
Eco24I	GRGCYC	2 cut(s)	300, 753
Eco47I	GGWCC	1 cut(s)	626
EcoO109I	RGGNCCY	2 cut(s)	296, 297
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	417
EcoT38I	GRGCYC	2 cut(s)	300, 753
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	4 cut(s)	121, 591, 646, 742
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	4 cut(s)	117, 587, 642, 738
Fnu4HI	GCNGC	5 cut(s)	111, 114, 270, 372, 486
FokI	GGATG	1 cut(s)	618
FriOI	GRGCYC	2 cut(s)	300, 753
Fsp4HI	GCNGC	5 cut(s)	111, 114, 270, 372, 486
FspBI	CTAG	2 cut(s)	215, 312
GlaI	GCGC	2 cut(s)	268, 451
GluI	GCNGC	5 cut(s)	111, 114, 270, 372, 486
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	298, 530
HapII	CCGG	1 cut(s)	629
HhaI	GCGC	2 cut(s)	269, 452
Hin1II	CATG	4 cut(s)	121, 591, 646, 742
Hin6I	GCGC	2 cut(s)	267, 450
HinP1I	GCGC	2 cut(s)	267, 450
HincII	GTYRAC	2 cut(s)	54, 802
HindII	GTYRAC	2 cut(s)	54, 802
HindIII	AAGCTT	1 cut(s)	718
HinfI	GANTC	2 cut(s)	84, 211
HpaII	CCGG	1 cut(s)	629
HphI	GGTGA	2 cut(s)	90, 434
Hpy166II	GTNNAC	4 cut(s)	54, 93, 744, 802
Hpy188III	TCNNGA	3 cut(s)	64, 320, 503
Hpy8I	GTNNAC	4 cut(s)	54, 93, 744, 802
HpyAV	CCTTC	2 cut(s)	772, 776
HpyCH4III	ACNGT	2 cut(s)	163, 664
HpyCH4V	TGCA	6 cut(s)	48, 406, 485, 543, 575, 824
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 198
HpyF3I	CTNAG	4 cut(s)	251, 670, 682, 805
Hsp92II	CATG	4 cut(s)	121, 591, 646, 742
HspAI	GCGC	2 cut(s)	267, 450
LmnI	GCTCC	2 cut(s)	239, 584
Lsp1109I	GCAGC	4 cut(s)	122, 125, 358, 497
LweI	GCATC	2 cut(s)	691, 811
MaeI	CTAG	2 cut(s)	215, 312
MbiI	CCGCTC	1 cut(s)	582
MboII	GAAGA	5 cut(s)	20, 220, 628, 658, 751
MfeI	CAATTG	1 cut(s)	549
MhlI	GDGCHC	2 cut(s)	300, 753
MlsI	TGGCCA	1 cut(s)	530
MluCI	AATT	6 cut(s)	21, 183, 222, 302, 323, 549
MluNI	TGGCCA	1 cut(s)	530
MmeI	TCCRAC	1 cut(s)	694
MnlI	CCTC	5 cut(s)	106, 441, 617, 746, 843
Mox20I	TGGCCA	1 cut(s)	530
MscI	TGGCCA	1 cut(s)	530
MseI	TTAA	3 cut(s)	648, 791, 839
Msp20I	TGGCCA	1 cut(s)	530
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	1 cut(s)	629
MspR9I	CCNGG	1 cut(s)	135
MunI	CAATTG	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	110, 198
NlaIII	CATG	4 cut(s)	121, 591, 646, 742
NlaIV	GGNNCC	2 cut(s)	298, 299
NspI	RCATGY	1 cut(s)	591
PfeI	GAWTC	2 cut(s)	84, 211
PkrI	GCNGC	5 cut(s)	112, 115, 271, 373, 487
PsiI	TTATAA	1 cut(s)	689
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	2 cut(s)	298, 299
PspOMI	GGGCCC	1 cut(s)	296
PspPI	GGNCC	3 cut(s)	296, 297, 626
PsrI	GAACNNNNNNTAC	2 cut(s)	483, 515
PstI	CTGCAG	1 cut(s)	487
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	2 cut(s)	160, 492
RsaNI	GTAC	2 cut(s)	159, 491
SaqAI	TTAA	3 cut(s)	648, 791, 839
SatI	GCNGC	5 cut(s)	111, 114, 270, 372, 486
Sau96I	GGNCC	3 cut(s)	296, 297, 626
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	2 cut(s)	300, 753
SfaNI	GCATC	2 cut(s)	691, 811
SfcI	CTRYAG	1 cut(s)	483
SinI	GGWCC	1 cut(s)	626
Sse9I	AATT	6 cut(s)	21, 183, 222, 302, 323, 549
SsiI	CCGC	2 cut(s)	270, 582
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	2 cut(s)	215, 312
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	2 cut(s)	163, 664
TaqI	TCGA	1 cut(s)	307
TasI	AATT	6 cut(s)	21, 183, 222, 302, 323, 549
TatI	WGTACW	2 cut(s)	158, 490
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	2 cut(s)	84, 211
Tru1I	TTAA	3 cut(s)	648, 791, 839
Tru9I	TTAA	3 cut(s)	648, 791, 839
TscAI	CASTG	2 cut(s)	255, 582
TseI	GCWGC	4 cut(s)	110, 113, 371, 485
TspDTI	ATGAA	3 cut(s)	17, 221, 629
TspGWI	ACGGA	1 cut(s)	618
TspRI	CASTG	2 cut(s)	255, 582
VpaK11BI	GGWCC	1 cut(s)	626
XapI	RAATTY	1 cut(s)	323
XceI	RCATGY	1 cut(s)	591
XspI	CTAG	2 cut(s)	215, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.