Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011994.1

Orthogroup ID

OG0007902

Physical Location & Seq

Genomic Coordinates Reverse (-)

4911 .. 7022

Gene Structure 2112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011994.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

atggcaacagccatgcctaaccttgctccaggacttatatttgtcattgcttgtactgttagattggagaaagtaaaacttagttgcctatacagcaaggtgaagattctaggcacattgctgtgtgtggtaggcgctctcacaatgagcataatgcaaagcaccacttccaccccagcaacagagattcaatatcaagctcattctcctgatgtgatcttcgacaagcagaagattattggatgcttgtatctccttgctgccgtagtaactttgttccaggtattatttttaaagggaatcgtgctcacttcaccagcaatggcaacagccatgcctaaccttgctccaggacttatatttgtcattgcttgtactgttagattggagaaagtaaaacttacttgcctatacagcaaggtgaagattctaggcacattgctgtgtgtggtaggcgctctcacaatgagcataatgcaaagcaccacttccaccccagcaacagagattcaatatcaagctcattctcctgatgtgatcttcgacaagcagaagattattggatgcttgtatctccttgctgccgtgtttgttttgtccagcaatattgtcttgcaggctacaacattgggtgattttcctgcacctatgtccttgtgtgccataacatctttcataggggtgtttataactgcagctgtacagttgattcaagatcacaaaatcgaaactggttggccccttgtcagtgctcgagacttgattggcttttctttactgggaggtacagtgagtggagcttgcatcagtttcaatgggtgggcaatgaagaagagagggccagttttggtgtcaatgtttagccccgttggaactgtctgctcagttgttctctcggttatcaccttaggagaatctatcagtgttggaagccttgccggtatgtgcctcatgtttactgggctctactttttcctctgggcaaaaggaaaggaaggatttccagatggggatgacttggaaagtgagtttgatgcagtgaagcctcttttaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

352

Amino Acids

37.47

Weight (kDa)

8.21

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47470 AT5G47470 AT5G47470
fragaria_vesca	FvH4_5g19040
malus_domestica	MD04G1063300.v1.1 MD06G1057600.v1.1
prunus_persica	Prupe.5G068400_v2.0.a1
pyrus_communis	pycom04g05700
rosa_chinensis	RchiOBHm_Chr3g0450311 RchiOBHm_Chr6g0263851 RchiOBHm_Chr7g0203481
rosa_laevigata	RLG00000003526
rosa_multiflora	Rmu_sc0011994.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069950 Rroxscaffold_3G00253780 Rroxscaffold_7G00182050
rosa_rugosa	Rorug07G0076200
rosa_samantha	Rh6BG122400 Rh7AG205700 Rh7BG205500 Rh7CG218400 Rh7DG212900 Rh7DG403300
rosa_wichuraiana	Rw7G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	689
AfaI	GTAC	4 cut(s)	55, 376, 702, 787
AgsI	TTSAA	4 cut(s)	191, 512, 713, 814
AjnI	CCWGG	3 cut(s)	28, 279, 349
AluBI	AGCT	4 cut(s)	200, 521, 698, 800
AluI	AGCT	4 cut(s)	200, 521, 698, 800
Alw21I	GWGCWC	2 cut(s)	309, 754
Alw26I	GTCTC	1 cut(s)	750
Ama87I	CYCGRG	1 cut(s)	753
AoxI	GGCC	2 cut(s)	737, 839
ApeKI	GCWGC	3 cut(s)	260, 581, 695
Asp700I	GAANNNNTTC	1 cut(s)	999
AspLEI	GCGC	2 cut(s)	137, 458
AspS9I	GGNCC	2 cut(s)	738, 839
AsuHPI	GGTGA	5 cut(s)	112, 306, 433, 644, 895
AvaI	CYCGRG	1 cut(s)	753
AxyI	CCTNAGG	1 cut(s)	907
BanII	GRGCYC	1 cut(s)	966
Bbv12I	GWGCWC	2 cut(s)	309, 754
BbvI	GCAGC	3 cut(s)	247, 568, 707
BccI	CCATC	1 cut(s)	1001
BceAI	ACGGC	2 cut(s)	248, 569
BciT130I	CCWGG	3 cut(s)	30, 281, 351
BcoDI	GTCTC	1 cut(s)	750
BfaI	CTAG	2 cut(s)	110, 431
BfmI	CTRYAG	1 cut(s)	693
BfoI	RGCGCY	2 cut(s)	138, 459
BisI	GCNGC	3 cut(s)	261, 582, 696
BlsI	GCNGC	3 cut(s)	262, 583, 697
Bme1390I	CCNGG	3 cut(s)	30, 281, 351
BmeT110I	CYCGRG	1 cut(s)	753
BmgT120I	GGNCC	2 cut(s)	738, 839
BmiI	GGNNCC	1 cut(s)	740
BmrFI	CCNGG	3 cut(s)	30, 281, 351
BmrI	ACTGGG	2 cut(s)	788, 969
BmsI	GCATC	4 cut(s)	233, 554, 813, 1024
BmuI	ACTGGG	2 cut(s)	788, 969
BpmI	CTGGAG	2 cut(s)	12, 333
BsaXI	ACNNNNNCTCC	2 cut(s)	774, 804
Bse118I	RCCGGY	1 cut(s)	938
Bse1I	ACTGG	4 cut(s)	736, 783, 842, 964
Bse21I	CCTNAGG	1 cut(s)	907
Bse3DI	GCAATG	6 cut(s)	45, 116, 327, 366, 437, 831
BseBI	CCWGG	3 cut(s)	30, 281, 351
BseGI	GGATG	3 cut(s)	248, 569, 1018
BseMI	GCAATG	6 cut(s)	45, 116, 327, 366, 437, 831
BseMII	CTCAG	1 cut(s)	897
BseNI	ACTGG	4 cut(s)	736, 783, 842, 964
BseXI	GCAGC	3 cut(s)	247, 568, 707
BseYI	CCCAGC	2 cut(s)	175, 496
BsgI	GTGCAG	1 cut(s)	627
BshFI	GGCC	2 cut(s)	739, 841
BsiHKAI	GWGCWC	2 cut(s)	309, 754
BsiHKCI	CYCGRG	1 cut(s)	753
BsiSI	CCGG	1 cut(s)	939
BsmAI	GTCTC	1 cut(s)	750
BsnI	GGCC	2 cut(s)	739, 841
BsoBI	CYCGRG	1 cut(s)	753
Bsp1286I	GDGCHC	3 cut(s)	309, 754, 966
Bsp1407I	TGTACA	1 cut(s)	700
Bsp143I	GATC	3 cut(s)	216, 537, 715
BspANI	GGCC	2 cut(s)	739, 841
BspCNI	CTCAG	1 cut(s)	896
BspLI	GGNNCC	1 cut(s)	740
BspMAI	CTGCAG	1 cut(s)	697
BsrDI	GCAATG	6 cut(s)	45, 116, 327, 366, 437, 831
BsrFI	RCCGGY	1 cut(s)	938
BsrGI	TGTACA	1 cut(s)	700
BsrI	ACTGG	4 cut(s)	736, 783, 842, 964
BssAI	RCCGGY	1 cut(s)	938
BssMI	GATC	3 cut(s)	216, 537, 715
Bst2UI	CCWGG	3 cut(s)	30, 281, 351
Bst4CI	ACNGT	5 cut(s)	58, 379, 705, 790, 877
Bst6I	CTCTTC	1 cut(s)	827
BstAUI	TGTACA	1 cut(s)	700
BstC8I	GCNNGC	2 cut(s)	618, 802
BstDEI	CTNAG	3 cut(s)	80, 883, 907
BstF5I	GGATG	3 cut(s)	248, 569, 1018
BstH2I	RGCGCY	2 cut(s)	138, 459
BstHHI	GCGC	2 cut(s)	137, 458
BstKTI	GATC	3 cut(s)	219, 540, 718
BstMAI	GTCTC	1 cut(s)	750
BstMBI	GATC	3 cut(s)	216, 537, 715
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 414
BstNI	CCWGG	3 cut(s)	30, 281, 351
BstSCI	CCNGG	3 cut(s)	28, 279, 349
BstSFI	CTRYAG	1 cut(s)	693
BstV1I	GCAGC	3 cut(s)	247, 568, 707
Bsu36I	CCTNAGG	1 cut(s)	907
BsuRI	GGCC	2 cut(s)	739, 841
BtsCI	GGATG	3 cut(s)	248, 569, 1018
BtsI	GCAGTG	1 cut(s)	1044
BtsIMutI	CAGTG	4 cut(s)	754, 795, 928, 1044
Cac8I	GCNNGC	2 cut(s)	618, 802
CfoI	GCGC	2 cut(s)	137, 458
Cfr10I	RCCGGY	1 cut(s)	938
Cfr13I	GGNCC	2 cut(s)	738, 839
Csp6I	GTAC	4 cut(s)	54, 375, 701, 786
CviAII	CATG	3 cut(s)	13, 334, 952
CviQI	GTAC	4 cut(s)	54, 375, 701, 786
DdeI	CTNAG	3 cut(s)	80, 883, 907
DpnI	GATC	3 cut(s)	218, 539, 717
DpnII	GATC	3 cut(s)	216, 537, 715
DraI	TTTAAA	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	827
EarI	CTCTTC	1 cut(s)	827
Eco24I	GRGCYC	1 cut(s)	966
Eco81I	CCTNAGG	1 cut(s)	907
Eco88I	CYCGRG	1 cut(s)	753
EcoRII	CCWGG	3 cut(s)	28, 279, 349
EcoT38I	GRGCYC	1 cut(s)	966
FaeI	CATG	3 cut(s)	16, 337, 955
FalI	AAGNNNNNCTT	8 cut(s)	63, 95, 151, 183, 384, 416, 472, 504
FatI	CATG	3 cut(s)	12, 333, 951
Fnu4HI	GCNGC	3 cut(s)	261, 582, 696
FokI	GGATG	3 cut(s)	255, 576, 1025
FriOI	GRGCYC	1 cut(s)	966
Fsp4HI	GCNGC	3 cut(s)	261, 582, 696
FspBI	CTAG	2 cut(s)	110, 431
GlaI	GCGC	2 cut(s)	136, 457
GluI	GCNGC	3 cut(s)	261, 582, 696
GsaI	CCCAGC	2 cut(s)	179, 500
GsuI	CTGGAG	2 cut(s)	12, 333
HaeII	RGCGCY	2 cut(s)	138, 459
HaeIII	GGCC	2 cut(s)	739, 841
HapII	CCGG	1 cut(s)	939
HhaI	GCGC	2 cut(s)	137, 458
Hin1II	CATG	3 cut(s)	16, 337, 955
Hin6I	GCGC	2 cut(s)	135, 456
HinP1I	GCGC	2 cut(s)	135, 456
HinfI	GANTC	7 cut(s)	106, 187, 300, 427, 508, 709, 914
HpaII	CCGG	1 cut(s)	939
HphI	GGTGA	5 cut(s)	112, 306, 433, 644, 895
Hpy166II	GTNNAC	1 cut(s)	957
Hpy188III	TCNNGA	5 cut(s)	209, 530, 713, 755, 1004
Hpy8I	GTNNAC	1 cut(s)	957
HpyAV	CCTTC	1 cut(s)	989
HpyCH4III	ACNGT	5 cut(s)	58, 379, 705, 790, 877
HpyCH4V	TGCA	7 cut(s)	157, 478, 616, 644, 695, 804, 1037
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 414
HpyF3I	CTNAG	3 cut(s)	80, 883, 907
Hsp92II	CATG	3 cut(s)	16, 337, 955
HspAI	GCGC	2 cut(s)	135, 456
Kzo9I	GATC	3 cut(s)	216, 537, 715
LmnI	GCTCC	3 cut(s)	31, 352, 797
Lsp1109I	GCAGC	3 cut(s)	247, 568, 707
LweI	GCATC	4 cut(s)	233, 554, 813, 1024
MaeI	CTAG	2 cut(s)	110, 431
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	3 cut(s)	218, 539, 717
MboI	GATC	3 cut(s)	216, 537, 715
MboII	GAAGA	8 cut(s)	115, 211, 244, 436, 532, 565, 841, 844
MhlI	GDGCHC	3 cut(s)	309, 754, 966
MmeI	TCCRAC	2 cut(s)	850, 907
MnlI	CCTC	5 cut(s)	776, 830, 959, 986, 1056
MroXI	GAANNNNTTC	1 cut(s)	999
MseI	TTAA	2 cut(s)	293, 1052
MslI	CAYNNNNRTG	3 cut(s)	121, 442, 680
MspA1I	CMGCKG	1 cut(s)	698
MspI	CCGG	1 cut(s)	939
MspR9I	CCNGG	3 cut(s)	30, 281, 351
MvaI	CCWGG	3 cut(s)	30, 281, 351
MwoI	GCNNNNNNNGC	2 cut(s)	93, 414
NdeII	GATC	3 cut(s)	216, 537, 715
NlaIII	CATG	3 cut(s)	16, 337, 955
NlaIV	GGNNCC	1 cut(s)	740
PaeR7I	CTCGAG	1 cut(s)	753
PdmI	GAANNNNTTC	1 cut(s)	999
PfeI	GAWTC	7 cut(s)	106, 187, 300, 427, 508, 709, 914
PfoI	TCCNGGA	2 cut(s)	28, 349
PkrI	GCNGC	3 cut(s)	262, 583, 697
PsiI	TTATAA	1 cut(s)	689
Psp6I	CCWGG	3 cut(s)	28, 279, 349
PspFI	CCCAGC	2 cut(s)	175, 496
PspGI	CCWGG	3 cut(s)	28, 279, 349
PspN4I	GGNNCC	1 cut(s)	740
PspPI	GGNCC	2 cut(s)	738, 839
PstI	CTGCAG	1 cut(s)	697
PvuII	CAGCTG	1 cut(s)	698
RsaI	GTAC	4 cut(s)	55, 376, 702, 787
RsaNI	GTAC	4 cut(s)	54, 375, 701, 786
RseI	CAYNNNNRTG	3 cut(s)	121, 442, 680
SaqAI	TTAA	2 cut(s)	293, 1052
SatI	GCNGC	3 cut(s)	261, 582, 696
Sau3AI	GATC	3 cut(s)	216, 537, 715
Sau96I	GGNCC	2 cut(s)	738, 839
ScrFI	CCNGG	3 cut(s)	30, 281, 351
SduI	GDGCHC	3 cut(s)	309, 754, 966
SfaNI	GCATC	4 cut(s)	233, 554, 813, 1024
SfcI	CTRYAG	1 cut(s)	693
Sfr274I	CTCGAG	1 cut(s)	753
SlaI	CTCGAG	1 cut(s)	753
SmiMI	CAYNNNNRTG	3 cut(s)	121, 442, 680
SmlI	CTYRAG	1 cut(s)	753
SmoI	CTYRAG	1 cut(s)	753
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	2 cut(s)	110, 431
StyD4I	CCNGG	3 cut(s)	28, 279, 349
TaaI	ACNGT	5 cut(s)	58, 379, 705, 790, 877
TaqI	TCGA	4 cut(s)	222, 543, 726, 754
TatI	WGTACW	3 cut(s)	53, 374, 700
TfiI	GAWTC	7 cut(s)	106, 187, 300, 427, 508, 709, 914
Tru1I	TTAA	2 cut(s)	293, 1052
Tru9I	TTAA	2 cut(s)	293, 1052
TscAI	CASTG	4 cut(s)	754, 795, 928, 1044
TseI	GCWGC	3 cut(s)	260, 581, 695
TspDTI	ATGAA	2 cut(s)	664, 842
TspRI	CASTG	4 cut(s)	754, 795, 928, 1044
XhoI	CTCGAG	1 cut(s)	753
XmnI	GAANNNNTTC	1 cut(s)	999
XspI	CTAG	2 cut(s)	110, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.