Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007902

Physical Location & Seq

Genomic Coordinates Forward (+)

18789639 .. 18791718

Gene Structure 2080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23664

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCTCACTTTACCAGCAATGGCAACAGCCATGCCTAATCTTGCTCCGGGAAGTATTTGTGTTATCGCTTGTACTGTTAGATTGGAGAGAGTAAAACTTAGTTGTGTATACAGCAAAGTGAAGATTCTAGGCACATTGTTGTGTGTGGTAAGCGCTTTCACAATGAGCATAATGCAAAGCACCACTTCCGCCCCAGCAACAAAGATTCAATATCAAGCTCATTCTCCTGATGTAATCTTCGATAAGCAAAAGATTATCAATTGCTTGTATCTCCTTGCTGCGGTGTTTGTTTTGTTCAGCAATGTTGTCTTACAGGCTACAACATTGGGTGATTTTGTTGCACCTATGTTCTTATGTTCCATAACATCTTTCATAGGGTTGTTTATAACTGTAGCTGTACAGTTAATTCAAGATCACAAAATCGAAATTGGTTGGCTCCTTGTCAGTGCTCGAGACTTGATTGGCTTTTCTTTACTGGGAGGTACATTGAGTCGATCTTGTATTAGTTTCAATGGGTGGGCAATGGAGAAGAGAGGGCCGGTTTTGGTGTCACTGTTTAGTCCCATTGGAATTGTCTGCTCAGTTGTTCTCTTAGTTATCACCTTAGGAGAATTTATCAGTGTTTGGAAGGTACTTAAATTATCTTCTAATTCTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

219

Amino Acids

23.64

Weight (kDa)

8.82

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47470 AT5G47470 AT5G47470
fragaria_vesca	FvH4_5g19040
malus_domestica	MD04G1063300.v1.1 MD06G1057600.v1.1
prunus_persica	Prupe.5G068400_v2.0.a1
pyrus_communis	pycom04g05700
rosa_chinensis	RchiOBHm_Chr3g0450311 RchiOBHm_Chr6g0263851 RchiOBHm_Chr7g0203481
rosa_laevigata	RLG00000003526
rosa_multiflora	Rmu_sc0011994.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069950 Rroxscaffold_3G00253780 Rroxscaffold_7G00182050
rosa_rugosa	Rorug07G0076200
rosa_samantha	Rh6BG122400 Rh7AG205700 Rh7BG205500 Rh7CG218400 Rh7DG212900 Rh7DG403300
rosa_wichuraiana	Rw7G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	386
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	2 cut(s)	189, 281
AcsI	RAATTY	1 cut(s)	611
AfaI	GTAC	4 cut(s)	73, 399, 484, 633
AfeI	AGCGCT	1 cut(s)	154
AfiI	CCNNNNNNNGG	1 cut(s)	280
AgsI	TTSAA	3 cut(s)	209, 410, 511
AluBI	AGCT	2 cut(s)	218, 395
AluI	AGCT	2 cut(s)	218, 395
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	1 cut(s)	447
Ama87I	CYCGRG	1 cut(s)	450
Aor51HI	AGCGCT	1 cut(s)	154
AoxI	GGCC	1 cut(s)	536
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	1 cut(s)	611
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	536
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	2 cut(s)	341, 592
AvaI	CYCGRG	1 cut(s)	450
AxyI	CCTNAGG	1 cut(s)	604
Bbv12I	GWGCWC	1 cut(s)	451
BbvI	GCAGC	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	390
BfoI	RGCGCY	1 cut(s)	156
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	48
BmeT110I	CYCGRG	1 cut(s)	450
BmgT120I	GGNCC	1 cut(s)	536
BmiI	GGNNCC	1 cut(s)	437
BmrFI	CCNGG	1 cut(s)	48
BmrI	ACTGGG	1 cut(s)	485
BmuI	ACTGGG	1 cut(s)	485
BpuMI	CCSGG	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse118I	RCCGGY	1 cut(s)	538
Bse1I	ACTGG	1 cut(s)	480
Bse21I	CCTNAGG	1 cut(s)	604
Bse3DI	GCAATG	3 cut(s)	24, 307, 528
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMI	GCAATG	3 cut(s)	24, 307, 528
BseMII	CTCAG	1 cut(s)	594
BseNI	ACTGG	1 cut(s)	480
BseXI	GCAGC	1 cut(s)	265
BseYI	CCCAGC	1 cut(s)	193
BshFI	GGCC	1 cut(s)	538
BsiHKAI	GWGCWC	1 cut(s)	451
BsiHKCI	CYCGRG	1 cut(s)	450
BsiSI	CCGG	2 cut(s)	47, 539
BslFI	GGGAC	1 cut(s)	546
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	447
BsmFI	GGGAC	1 cut(s)	546
BsnI	GGCC	1 cut(s)	538
BsoBI	CYCGRG	1 cut(s)	450
Bsp1286I	GDGCHC	1 cut(s)	451
Bsp1407I	TGTACA	1 cut(s)	397
Bsp143I	GATC	2 cut(s)	412, 494
BspACI	CCGC	2 cut(s)	189, 281
BspANI	GGCC	1 cut(s)	538
BspCNI	CTCAG	1 cut(s)	593
BspLI	GGNNCC	1 cut(s)	437
BsrDI	GCAATG	3 cut(s)	24, 307, 528
BsrFI	RCCGGY	1 cut(s)	538
BsrGI	TGTACA	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	480
BssAI	RCCGGY	1 cut(s)	538
BssMI	GATC	2 cut(s)	412, 494
BssNAI	GTATAC	1 cut(s)	109
Bst1107I	GTATAC	1 cut(s)	109
Bst4CI	ACNGT	4 cut(s)	76, 391, 402, 555
Bst6I	CTCTTC	1 cut(s)	524
BstAUI	TGTACA	1 cut(s)	397
BstDEI	CTNAG	4 cut(s)	98, 580, 592, 604
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	2 cut(s)	415, 497
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	2 cut(s)	412, 494
BstSCI	CCNGG	1 cut(s)	46
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	265
BstZ17I	GTATAC	1 cut(s)	109
Bsu36I	CCTNAGG	1 cut(s)	604
BsuRI	GGCC	1 cut(s)	538
BtsIMutI	CAGTG	3 cut(s)	451, 551, 625
CfoI	GCGC	1 cut(s)	155
Cfr10I	RCCGGY	1 cut(s)	538
Cfr13I	GGNCC	1 cut(s)	536
Csp6I	GTAC	4 cut(s)	72, 398, 483, 632
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	7 cut(s)	29, 218, 317, 395, 436, 465, 538
CviKI_1	RGCY	7 cut(s)	29, 218, 317, 395, 436, 465, 538
CviQI	GTAC	4 cut(s)	72, 398, 483, 632
DdeI	CTNAG	4 cut(s)	98, 580, 592, 604
DpnI	GATC	2 cut(s)	414, 496
DpnII	GATC	2 cut(s)	412, 494
Eam1104I	CTCTTC	1 cut(s)	524
EarI	CTCTTC	1 cut(s)	524
EciI	GGCGGA	1 cut(s)	178
Eco47III	AGCGCT	1 cut(s)	154
Eco81I	CCTNAGG	1 cut(s)	604
Eco88I	CYCGRG	1 cut(s)	450
FaeI	CATG	1 cut(s)	34
FaiI	YATR	8 cut(s)	32, 109, 170, 347, 355, 362, 374, 386
FalI	AAGNNNNNCTT	2 cut(s)	169, 201
FaqI	GGGAC	1 cut(s)	546
FatI	CATG	1 cut(s)	30
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	1 cut(s)	128
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	1 cut(s)	279
GsaI	CCCAGC	1 cut(s)	197
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	538
HapII	CCGG	2 cut(s)	47, 539
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	1 cut(s)	34
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HinfI	GANTC	3 cut(s)	124, 205, 490
HpaII	CCGG	2 cut(s)	47, 539
HphI	GGTGA	2 cut(s)	341, 592
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	655
Hpy188III	TCNNGA	3 cut(s)	227, 410, 452
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	1 cut(s)	622
HpyCH4III	ACNGT	4 cut(s)	76, 391, 402, 555
HpyCH4V	TGCA	2 cut(s)	175, 341
HpyF3I	CTNAG	4 cut(s)	98, 580, 592, 604
Hsp92II	CATG	1 cut(s)	34
HspAI	GCGC	1 cut(s)	153
Kzo9I	GATC	2 cut(s)	412, 494
LmnI	GCTCC	2 cut(s)	49, 441
LpnPI	CCDG	7 cut(s)	27, 60, 207, 240, 299, 461, 552
Lsp1109I	GCAGC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	549
MalI	GATC	2 cut(s)	414, 496
MboI	GATC	2 cut(s)	412, 494
MboII	GAAGA	4 cut(s)	133, 229, 541, 636
MfeI	CAATTG	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	451
MluCI	AATT	7 cut(s)	259, 405, 426, 570, 611, 638, 649
MlyI	GAGTC	1 cut(s)	499
MnlI	CCTC	2 cut(s)	473, 527
MseI	TTAA	2 cut(s)	404, 636
MslI	CAYNNNNRTG	1 cut(s)	139
MspI	CCGG	2 cut(s)	47, 539
MspR9I	CCNGG	1 cut(s)	48
MunI	CAATTG	1 cut(s)	259
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	2 cut(s)	412, 494
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	1 cut(s)	437
NmuCI	GTSAC	1 cut(s)	549
PaeR7I	CTCGAG	1 cut(s)	450
PfeI	GAWTC	2 cut(s)	124, 205
PfoI	TCCNGGA	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	498
PsiI	TTATAA	1 cut(s)	386
PspFI	CCCAGC	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	437
PspPI	GGNCC	1 cut(s)	536
RsaI	GTAC	4 cut(s)	73, 399, 484, 633
RsaNI	GTAC	4 cut(s)	72, 398, 483, 632
RseI	CAYNNNNRTG	1 cut(s)	139
SaqAI	TTAA	2 cut(s)	404, 636
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	2 cut(s)	412, 494
Sau96I	GGNCC	1 cut(s)	536
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	451
SetI	ASST	6 cut(s)	220, 346, 397, 484, 605, 633
SfcI	CTRYAG	1 cut(s)	390
Sfr274I	CTCGAG	1 cut(s)	450
SlaI	CTCGAG	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	139
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
Sse9I	AATT	7 cut(s)	259, 405, 426, 570, 611, 638, 649
SsiI	CCGC	2 cut(s)	189, 281
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	46
TaaI	ACNGT	4 cut(s)	76, 391, 402, 555
TaqI	TCGA	4 cut(s)	240, 423, 451, 493
TasI	AATT	7 cut(s)	259, 405, 426, 570, 611, 638, 649
TatI	WGTACW	2 cut(s)	71, 397
TfiI	GAWTC	2 cut(s)	124, 205
Tru1I	TTAA	2 cut(s)	404, 636
Tru9I	TTAA	2 cut(s)	404, 636
TscAI	CASTG	3 cut(s)	451, 558, 625
TseFI	GTSAC	1 cut(s)	549
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	549
TspDTI	ATGAA	1 cut(s)	361
TspRI	CASTG	3 cut(s)	451, 558, 625
XapI	RAATTY	1 cut(s)	611
XhoI	CTCGAG	1 cut(s)	450
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.