Rroxscaffold_7G00182050

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
21064729 .. 21067584
2856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00182050.1

Sequence Viewer

Length: 390 bp
ATGGCAACAGCCATGCCTAATCTTGCTCCGGGAAGTATTTGTGTTATGGCTTGCACTGTTAGATTGGAGAGAGTAAAACTTAGTTGCCTATACAGCAAAGTGAAGATTCTAGGCACATTGTTGTGTGTGGTAAGCGCTTTCACAATGAGCATAATGCAAAGCACCACTTCCGCCCCAGCAACAGAGATTCAATATCAAGCTCATTCTCCTGATGTAATCTTCGATAAGCAAAAGATTATCAGTTGCTTGTATCTCCTTGCTGCGGTGTTTGTTTTGTTCAGCAATGTTGTCTTGCAGGCAAATGGTATGGCAGCATACTTTGTGACATTGACTATGTGTCTTGGCCTTTGGTGTGGCAGAATATACTTGCTTGACATACTTTCTCCATAA

Protein Analysis

129

Amino Acids

14.04

Weight (kDa)

8.51

Isoelectric Point (pI)

53.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 171, 263
AfeI AGCGCT 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 1 cut(s) 191
AhdI GACNNNNNGTC 1 cut(s) 336
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Aor51HI AGCGCT 1 cut(s) 136
AoxI GGCC 1 cut(s) 343
ApeKI GCWGC 2 cut(s) 260, 311
AspLEI GCGC 1 cut(s) 137
AsuC2I CCSGG 1 cut(s) 30
BbvI GCAGC 2 cut(s) 247, 323
BcnI CCSGG 1 cut(s) 30
BfaI CTAG 1 cut(s) 110
BfoI RGCGCY 1 cut(s) 138
BisI GCNGC 2 cut(s) 261, 312
BlsI GCNGC 2 cut(s) 262, 313
Bme1390I CCNGG 1 cut(s) 30
BmeRI GACNNNNNGTC 1 cut(s) 336
BmrFI CCNGG 1 cut(s) 30
BpuMI CCSGG 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse3DI GCAATG 1 cut(s) 289
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMI GCAATG 1 cut(s) 289
BseXI GCAGC 2 cut(s) 247, 323
BseYI CCCAGC 1 cut(s) 175
BshFI GGCC 1 cut(s) 345
BsiSI CCGG 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 262
BsnI GGCC 1 cut(s) 345
BspACI CCGC 2 cut(s) 171, 263
BspANI GGCC 1 cut(s) 345
BsrDI GCAATG 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 58
BstC8I GCNNGC 2 cut(s) 52, 297
BstDEI CTNAG 1 cut(s) 80
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 1 cut(s) 137
BstMWI GCNNNNNNNGC 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 28
BstV1I GCAGC 2 cut(s) 247, 323
BsuRI GGCC 1 cut(s) 345
BtsIMutI CAGTG 1 cut(s) 54
Cac8I GCNNGC 2 cut(s) 52, 297
CfoI GCGC 1 cut(s) 137
CviAII CATG 1 cut(s) 13
CviJI RGCY 4 cut(s) 11, 50, 200, 345
CviKI_1 RGCY 4 cut(s) 11, 50, 200, 345
DdeI CTNAG 1 cut(s) 80
DriI GACNNNNNGTC 1 cut(s) 336
Eam1105I GACNNNNNGTC 1 cut(s) 336
EciI GGCGGA 1 cut(s) 160
Eco47III AGCGCT 1 cut(s) 136
FaeI CATG 1 cut(s) 16
FalI AAGNNNNNCTT 2 cut(s) 151, 183
FatI CATG 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 261, 312
Fsp4HI GCNGC 2 cut(s) 261, 312
FspBI CTAG 1 cut(s) 110
GlaI GCGC 1 cut(s) 136
GluI GCNGC 2 cut(s) 261, 312
GsaI CCCAGC 1 cut(s) 179
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 1 cut(s) 345
HapII CCGG 1 cut(s) 29
HhaI GCGC 1 cut(s) 137
Hin1II CATG 1 cut(s) 16
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HinfI GANTC 2 cut(s) 106, 187
HpaII CCGG 1 cut(s) 29
Hpy188III TCNNGA 1 cut(s) 209
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 3 cut(s) 54, 157, 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
HpyF3I CTNAG 1 cut(s) 80
Hsp92II CATG 1 cut(s) 16
HspAI GCGC 1 cut(s) 135
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 4 cut(s) 42, 189, 222, 281
Lsp1109I GCAGC 2 cut(s) 247, 323
MaeI CTAG 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 322
MboII GAAGA 2 cut(s) 115, 211
MslI CAYNNNNRTG 1 cut(s) 121
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 93
NciI CCSGG 1 cut(s) 30
NlaIII CATG 1 cut(s) 16
NmuCI GTSAC 1 cut(s) 322
PfeI GAWTC 2 cut(s) 106, 187
PfoI TCCNGGA 1 cut(s) 28
PkrI GCNGC 2 cut(s) 262, 313
PspFI CCCAGC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 121
SatI GCNGC 2 cut(s) 261, 312
ScrFI CCNGG 1 cut(s) 30
SetI ASST 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 121
SsiI CCGC 2 cut(s) 171, 263
SspMI CTAG 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 222
TfiI GAWTC 2 cut(s) 106, 187
TscAI CASTG 1 cut(s) 61
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 2 cut(s) 260, 311
Tsp45I GTSAC 1 cut(s) 322
TspRI CASTG 1 cut(s) 61
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.