Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0007902

Physical Location & Seq

Genomic Coordinates Reverse (-)

55693060 .. 55694160

Gene Structure 1101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG403300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGTTGACTTGCAGGGTGTTTATAACTGCAGCTGCACAGTTAATTCAAGATCACAAAATCGAAACTGGTTGGCTCCTTGTCAGTGCTCGAGACTTGATTGGCTTTTCTTTACTGGGAGGTACATTGAGTGGAGCTTGTATTAGTTTCAATGGGTGGGCAATGGAGAAGAGAGGGCCACTTTTGGTGTCACTGTTTAGTCCCATTGGAACTGTCTGCTCAGTTGTTCTCTTAGTTATCACCTTAGGAGAATTTATCAGTGTTGGAAGGCACTCCTGGTATCACAGATTATGTAATGGCAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

101

Amino Acids

10.96

Weight (kDa)

8.91

Isoelectric Point (pI)

27.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47470 AT5G47470 AT5G47470
fragaria_vesca	FvH4_5g19040
malus_domestica	MD04G1063300.v1.1 MD06G1057600.v1.1
prunus_persica	Prupe.5G068400_v2.0.a1
pyrus_communis	pycom04g05700
rosa_chinensis	RchiOBHm_Chr3g0450311 RchiOBHm_Chr6g0263851 RchiOBHm_Chr7g0203481
rosa_laevigata	RLG00000003526
rosa_multiflora	Rmu_sc0011994.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069950 Rroxscaffold_3G00253780 Rroxscaffold_7G00182050
rosa_rugosa	Rorug07G0076200
rosa_samantha	Rh6BG122400 Rh7AG205700 Rh7BG205500 Rh7CG218400 Rh7DG212900 Rh7DG403300
rosa_wichuraiana	Rw7G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	23
AcsI	RAATTY	1 cut(s)	248
AfaI	GTAC	1 cut(s)	121
AgsI	TTSAA	2 cut(s)	47, 148
AjnI	CCWGG	1 cut(s)	272
AluBI	AGCT	3 cut(s)	32, 134, 302
AluI	AGCT	3 cut(s)	32, 134, 302
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	1 cut(s)	84
Ama87I	CYCGRG	1 cut(s)	87
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	29, 32
ApoI	RAATTY	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	229
AvaI	CYCGRG	1 cut(s)	87
AxyI	CCTNAGG	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	2 cut(s)	19, 41
BciT130I	CCWGG	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	27
BisI	GCNGC	2 cut(s)	30, 33
BlsI	GCNGC	2 cut(s)	31, 34
Bme1390I	CCNGG	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	74
BmrFI	CCNGG	1 cut(s)	274
BmrI	ACTGGG	1 cut(s)	122
BmuI	ACTGGG	1 cut(s)	122
Bse1I	ACTGG	2 cut(s)	70, 117
Bse21I	CCTNAGG	1 cut(s)	241
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	274
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	2 cut(s)	70, 117
BseXI	GCAGC	2 cut(s)	19, 41
BsgI	GTGCAG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	88
BsiHKCI	CYCGRG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	183
BsmAI	GTCTC	1 cut(s)	84
BsmFI	GGGAC	1 cut(s)	183
BsnI	GGCC	1 cut(s)	175
BsoBI	CYCGRG	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	230
BspLI	GGNNCC	1 cut(s)	74
BspMAI	CTGCAG	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	2 cut(s)	70, 117
BssMI	GATC	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	274
Bst4CI	ACNGT	3 cut(s)	39, 192, 211
Bst6I	CTCTTC	1 cut(s)	161
BstDEI	CTNAG	3 cut(s)	217, 229, 241
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	49
BstNI	CCWGG	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	272
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	19, 41
Bsu36I	CCTNAGG	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	175
BtsIMutI	CAGTG	3 cut(s)	88, 188, 262
Cfr13I	GGNCC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	120
CviJI	RGCY	6 cut(s)	32, 73, 102, 134, 175, 302
CviKI_1	RGCY	6 cut(s)	32, 73, 102, 134, 175, 302
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	3 cut(s)	217, 229, 241
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Eco81I	CCTNAGG	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	272
FaiI	YATR	2 cut(s)	23, 289
FaqI	GGGAC	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	30, 33
Fsp4HI	GCNGC	2 cut(s)	30, 33
GluI	GCNGC	2 cut(s)	30, 33
HaeIII	GGCC	1 cut(s)	175
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	2 cut(s)	47, 89
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	3 cut(s)	39, 192, 211
HpyCH4V	TGCA	3 cut(s)	12, 29, 35
HpyF3I	CTNAG	3 cut(s)	217, 229, 241
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	2 cut(s)	78, 131
LpnPI	CCDG	4 cut(s)	51, 98, 259, 286
Lsp1109I	GCAGC	2 cut(s)	19, 41
MaeIII	GTNAC	1 cut(s)	186
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	2 cut(s)	42, 248
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	2 cut(s)	110, 164
MseI	TTAA	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	274
MvaI	CCWGG	1 cut(s)	274
NdeII	GATC	1 cut(s)	49
NlaIV	GGNNCC	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	186
PaeR7I	CTCGAG	1 cut(s)	87
PkrI	GCNGC	2 cut(s)	31, 34
PsiI	TTATAA	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	272
PspN4I	GGNNCC	1 cut(s)	74
PspPI	GGNCC	1 cut(s)	173
PstI	CTGCAG	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	2 cut(s)	30, 33
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	274
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	5 cut(s)	34, 121, 136, 242, 304
SfcI	CTRYAG	1 cut(s)	27
Sfr274I	CTCGAG	1 cut(s)	87
SlaI	CTCGAG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
Sse9I	AATT	2 cut(s)	42, 248
StyD4I	CCNGG	1 cut(s)	272
TaaI	ACNGT	3 cut(s)	39, 192, 211
TaqI	TCGA	2 cut(s)	60, 88
TasI	AATT	2 cut(s)	42, 248
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	3 cut(s)	88, 195, 262
TseFI	GTSAC	1 cut(s)	186
TseI	GCWGC	2 cut(s)	29, 32
Tsp45I	GTSAC	1 cut(s)	186
TspRI	CASTG	3 cut(s)	88, 195, 262
XapI	RAATTY	1 cut(s)	248
XhoI	CTCGAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.