Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0007902

Physical Location & Seq

Genomic Coordinates Reverse (-)

18822751 .. 18825797

Gene Structure 3047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG205700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAGGATATTGAAAAGGGAGATAATCGAAGATGTTGCTCTGATAGGGGGGTTGGTAGGGGTGCAATTTGTGTATGCTGGGAATTCTGTATTGCTGAGCTATTTTATGTCTTTGGGGCTTGACCCTCTCACCATTGTTATCTACTCCAGCTTTGCTTCCTTCATCATCCTCTCTCCCATTGCTTACTATTTTGAAAGGAGCAAATGGCCAAACAAAATCAGCCTCAAGTTTGTGATTCAGTTGGTTTTGATCGCCTTTGGAGGAGTAACTTTGTTCCAGGTATTATTTTTAAAGGGAATCGTGCTCACTTCACCAGCAATGGCAACAGCCATGCCTAACCTTGCTCCAGGACTTATATTTGTCATTGCTTGTACTGTTAGATTGGAGAAAGTAAAACTTAGTTGCCTATACAGCAAGGTGAAGATTCTAGGTACATTGTTGTGTGTGGTAGGCGCTCTCACAATGAGCATAATGCAAAGCACCACTTCCACCCCAGCAACAGAGATTCAATATCAAGCTCATTCTCCTGATGTGATCTTCGACAAGCAGAAGATTATTGGATGCTTGTATCTCCTTGCTGCCGTGTTTGTTTTGTCCAGCAATATTGTCTTGCAGGCTACAACATTGGGTGATTTTCCTGCACCTGTGTCCTTGTGTGCCATAACATCTTTCATAGGGGTGTTTATAACTGCAGCTGTACAGTTGATTCAAGATCACAAAATCGAAACTGGTTGGCCCCTTGTCAGTGCTCGAGACTTGATTGGCTTTTCTTTACTGGGAGGTACAGTGAGTGGAGCTTGCATCAGTTTCAATGGGTGGGCAATGAAGAAGAGAGGGCCAGTTTTGGTGTCAATGTTTAGCCCCATTGGAACTGTCTGCTCAGTTGTTCTCTCGGTTATCACCTTAGGAGAATCTATCAGTGTTGGAAGGTACTCAACTATGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

315

Amino Acids

33.87

Weight (kDa)

9.05

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	19 - 156	1.1e-07	EamA-like transporter family
EamA	PF00892	186 - 308	2.1e-08	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47470 AT5G47470 AT5G47470
fragaria_vesca	FvH4_5g19040
malus_domestica	MD04G1063300.v1.1 MD06G1057600.v1.1
prunus_persica	Prupe.5G068400_v2.0.a1
pyrus_communis	pycom04g05700
rosa_chinensis	RchiOBHm_Chr3g0450311 RchiOBHm_Chr6g0263851 RchiOBHm_Chr7g0203481
rosa_laevigata	RLG00000003526
rosa_multiflora	Rmu_sc0011994.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069950 Rroxscaffold_3G00253780 Rroxscaffold_7G00182050
rosa_rugosa	Rorug07G0076200
rosa_samantha	Rh6BG122400 Rh7AG205700 Rh7BG205500 Rh7CG218400 Rh7DG212900 Rh7DG403300
rosa_wichuraiana	Rw7G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	686
AcoI	YGGCCR	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	82
AfaI	GTAC	5 cut(s)	373, 433, 699, 784, 932
AgsI	TTSAA	5 cut(s)	13, 194, 509, 710, 811
AjnI	CCWGG	2 cut(s)	276, 346
AluBI	AGCT	5 cut(s)	99, 150, 518, 695, 797
AluI	AGCT	5 cut(s)	99, 150, 518, 695, 797
Alw21I	GWGCWC	2 cut(s)	306, 751
Alw26I	GTCTC	1 cut(s)	747
Ama87I	CYCGRG	1 cut(s)	750
AoxI	GGCC	3 cut(s)	206, 734, 836
ApeKI	GCWGC	2 cut(s)	578, 692
ApoI	RAATTY	1 cut(s)	82
AspLEI	GCGC	1 cut(s)	455
AspS9I	GGNCC	2 cut(s)	735, 836
AsuHPI	GGTGA	5 cut(s)	121, 303, 430, 641, 892
AvaI	CYCGRG	1 cut(s)	750
AxyI	CCTNAGG	1 cut(s)	904
BalI	TGGCCA	1 cut(s)	208
Bbv12I	GWGCWC	2 cut(s)	306, 751
BbvI	GCAGC	2 cut(s)	565, 704
BceAI	ACGGC	1 cut(s)	566
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BciT130I	CCWGG	2 cut(s)	278, 348
BcoDI	GTCTC	1 cut(s)	747
BfaI	CTAG	1 cut(s)	428
BfmI	CTRYAG	1 cut(s)	690
BfoI	RGCGCY	1 cut(s)	456
BisI	GCNGC	2 cut(s)	579, 693
BlpI	GCTNAGC	1 cut(s)	95
BlsI	GCNGC	2 cut(s)	580, 694
Bme1390I	CCNGG	2 cut(s)	278, 348
BmeT110I	CYCGRG	1 cut(s)	750
BmgT120I	GGNCC	2 cut(s)	735, 836
BmiI	GGNNCC	1 cut(s)	737
BmrFI	CCNGG	2 cut(s)	278, 348
BmrI	ACTGGG	1 cut(s)	785
BmsI	GCATC	2 cut(s)	551, 810
BmuI	ACTGGG	1 cut(s)	785
BpmI	CTGGAG	2 cut(s)	130, 330
Bpu1102I	GCTNAGC	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	209
BsaXI	ACNNNNNCTCC	2 cut(s)	771, 801
Bse1I	ACTGG	3 cut(s)	733, 780, 839
Bse21I	CCTNAGG	1 cut(s)	904
Bse3DI	GCAATG	4 cut(s)	177, 324, 363, 828
BseBI	CCWGG	2 cut(s)	278, 348
BseGI	GGATG	2 cut(s)	165, 566
BseMI	GCAATG	4 cut(s)	177, 324, 363, 828
BseMII	CTCAG	2 cut(s)	86, 894
BseNI	ACTGG	3 cut(s)	733, 780, 839
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	565, 704
BseYI	CCCAGC	2 cut(s)	77, 493
BsgI	GTGCAG	1 cut(s)	624
BshFI	GGCC	3 cut(s)	208, 736, 838
BsiHKAI	GWGCWC	2 cut(s)	306, 751
BsiHKCI	CYCGRG	1 cut(s)	750
BsmAI	GTCTC	1 cut(s)	747
BsnI	GGCC	3 cut(s)	208, 736, 838
BsoBI	CYCGRG	1 cut(s)	750
Bsp1286I	GDGCHC	2 cut(s)	306, 751
Bsp1407I	TGTACA	1 cut(s)	697
Bsp143I	GATC	3 cut(s)	249, 534, 712
Bsp1720I	GCTNAGC	1 cut(s)	95
BspANI	GGCC	3 cut(s)	208, 736, 838
BspCNI	CTCAG	2 cut(s)	87, 893
BspLI	GGNNCC	1 cut(s)	737
BspMAI	CTGCAG	1 cut(s)	694
BsrDI	GCAATG	4 cut(s)	177, 324, 363, 828
BsrGI	TGTACA	1 cut(s)	697
BsrI	ACTGG	3 cut(s)	733, 780, 839
BssMI	GATC	3 cut(s)	249, 534, 712
Bst2UI	CCWGG	2 cut(s)	278, 348
Bst4CI	ACNGT	4 cut(s)	376, 702, 787, 874
Bst6I	CTCTTC	1 cut(s)	824
BstAUI	TGTACA	1 cut(s)	697
BstC8I	GCNNGC	2 cut(s)	615, 799
BstDEI	CTNAG	4 cut(s)	95, 398, 880, 904
BstF5I	GGATG	2 cut(s)	165, 566
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	3 cut(s)	252, 537, 715
BstMAI	GTCTC	1 cut(s)	747
BstMBI	GATC	3 cut(s)	249, 534, 712
BstMWI	GCNNNNNNNGC	1 cut(s)	411
BstNI	CCWGG	2 cut(s)	278, 348
BstSCI	CCNGG	2 cut(s)	276, 346
BstSFI	CTRYAG	1 cut(s)	690
BstV1I	GCAGC	2 cut(s)	565, 704
Bsu36I	CCTNAGG	1 cut(s)	904
BsuRI	GGCC	3 cut(s)	208, 736, 838
BtsCI	GGATG	2 cut(s)	165, 566
BtsIMutI	CAGTG	3 cut(s)	751, 792, 925
Cac8I	GCNNGC	2 cut(s)	615, 799
CfoI	GCGC	1 cut(s)	455
Cfr13I	GGNCC	2 cut(s)	735, 836
Csp6I	GTAC	5 cut(s)	372, 432, 698, 783, 931
CviAII	CATG	1 cut(s)	331
CviQI	GTAC	5 cut(s)	372, 432, 698, 783, 931
DdeI	CTNAG	4 cut(s)	95, 398, 880, 904
DpnI	GATC	3 cut(s)	251, 536, 714
DpnII	GATC	3 cut(s)	249, 534, 712
DraI	TTTAAA	1 cut(s)	291
EaeI	YGGCCR	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	824
EarI	CTCTTC	1 cut(s)	824
Eco81I	CCTNAGG	1 cut(s)	904
Eco88I	CYCGRG	1 cut(s)	750
EcoRI	GAATTC	1 cut(s)	82
EcoRII	CCWGG	2 cut(s)	276, 346
FaeI	CATG	1 cut(s)	334
FalI	AAGNNNNNCTT	4 cut(s)	381, 413, 469, 501
FatI	CATG	1 cut(s)	330
Fnu4HI	GCNGC	2 cut(s)	579, 693
FokI	GGATG	2 cut(s)	152, 573
Fsp4HI	GCNGC	2 cut(s)	579, 693
FspBI	CTAG	1 cut(s)	428
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	2 cut(s)	579, 693
GsaI	CCCAGC	2 cut(s)	81, 497
GsuI	CTGGAG	2 cut(s)	130, 330
HaeII	RGCGCY	1 cut(s)	456
HaeIII	GGCC	3 cut(s)	208, 736, 838
HhaI	GCGC	1 cut(s)	455
Hin1II	CATG	1 cut(s)	334
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HinfI	GANTC	6 cut(s)	235, 297, 424, 505, 706, 911
HphI	GGTGA	5 cut(s)	121, 303, 430, 641, 892
Hpy188I	TCNGA	1 cut(s)	42
Hpy188III	TCNNGA	3 cut(s)	527, 710, 752
HpyAV	CCTTC	2 cut(s)	169, 921
HpyCH4III	ACNGT	4 cut(s)	376, 702, 787, 874
HpyCH4V	TGCA	6 cut(s)	64, 475, 613, 641, 692, 801
HpyF10VI	GCNNNNNNNGC	1 cut(s)	411
HpyF3I	CTNAG	4 cut(s)	95, 398, 880, 904
Hsp92II	CATG	1 cut(s)	334
HspAI	GCGC	1 cut(s)	453
Kzo9I	GATC	3 cut(s)	249, 534, 712
LmnI	GCTCC	3 cut(s)	198, 349, 794
Lsp1109I	GCAGC	2 cut(s)	565, 704
LweI	GCATC	2 cut(s)	551, 810
MaeI	CTAG	1 cut(s)	428
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	3 cut(s)	251, 536, 714
MboI	GATC	3 cut(s)	249, 534, 712
MboII	GAAGA	6 cut(s)	41, 433, 529, 562, 838, 841
MhlI	GDGCHC	2 cut(s)	306, 751
MlsI	TGGCCA	1 cut(s)	208
MluCI	AATT	2 cut(s)	65, 82
MluNI	TGGCCA	1 cut(s)	208
MmeI	TCCRAC	1 cut(s)	904
MnlI	CCTC	6 cut(s)	135, 179, 233, 254, 773, 827
Mox20I	TGGCCA	1 cut(s)	208
MscI	TGGCCA	1 cut(s)	208
MseI	TTAA	1 cut(s)	290
MslI	CAYNNNNRTG	2 cut(s)	439, 677
Msp20I	TGGCCA	1 cut(s)	208
MspA1I	CMGCKG	1 cut(s)	695
MspR9I	CCNGG	2 cut(s)	278, 348
MvaI	CCWGG	2 cut(s)	278, 348
MwoI	GCNNNNNNNGC	1 cut(s)	411
NdeII	GATC	3 cut(s)	249, 534, 712
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	1 cut(s)	737
PaeR7I	CTCGAG	1 cut(s)	750
PfeI	GAWTC	6 cut(s)	235, 297, 424, 505, 706, 911
PfoI	TCCNGGA	1 cut(s)	346
PkrI	GCNGC	2 cut(s)	580, 694
PsiI	TTATAA	1 cut(s)	686
Psp6I	CCWGG	2 cut(s)	276, 346
PspFI	CCCAGC	2 cut(s)	77, 493
PspGI	CCWGG	2 cut(s)	276, 346
PspN4I	GGNNCC	1 cut(s)	737
PspPI	GGNCC	2 cut(s)	735, 836
PstI	CTGCAG	1 cut(s)	694
PvuII	CAGCTG	1 cut(s)	695
RsaI	GTAC	5 cut(s)	373, 433, 699, 784, 932
RsaNI	GTAC	5 cut(s)	372, 432, 698, 783, 931
RseI	CAYNNNNRTG	2 cut(s)	439, 677
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	2 cut(s)	579, 693
Sau3AI	GATC	3 cut(s)	249, 534, 712
Sau96I	GGNCC	2 cut(s)	735, 836
ScrFI	CCNGG	2 cut(s)	278, 348
SduI	GDGCHC	2 cut(s)	306, 751
SfaNI	GCATC	2 cut(s)	551, 810
SfcI	CTRYAG	1 cut(s)	690
Sfr274I	CTCGAG	1 cut(s)	750
SlaI	CTCGAG	1 cut(s)	750
SmiMI	CAYNNNNRTG	2 cut(s)	439, 677
SmlI	CTYRAG	2 cut(s)	224, 750
SmoI	CTYRAG	2 cut(s)	224, 750
Sse9I	AATT	2 cut(s)	65, 82
SspI	AATATT	1 cut(s)	604
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	2 cut(s)	276, 346
TaaI	ACNGT	4 cut(s)	376, 702, 787, 874
TaqI	TCGA	4 cut(s)	27, 540, 723, 751
TasI	AATT	2 cut(s)	65, 82
TatI	WGTACW	2 cut(s)	371, 697
TfiI	GAWTC	6 cut(s)	235, 297, 424, 505, 706, 911
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TscAI	CASTG	3 cut(s)	751, 792, 925
TseI	GCWGC	2 cut(s)	578, 692
TspDTI	ATGAA	3 cut(s)	151, 661, 839
TspRI	CASTG	3 cut(s)	751, 792, 925
XapI	RAATTY	1 cut(s)	82
XhoI	CTCGAG	1 cut(s)	750
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.