Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007902

Physical Location & Seq

Genomic Coordinates Reverse (-)

90806196 .. 90807620

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00069950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGAGCGGGGAGTTGGCCCGAGCCTAGAGCTTGGGGTGCTCGCGGCTTTGGTGATTCGAGGTTGGCTTAGATGGAGTGGCGGATCTGTTGTAGCGTTCTCCGACGATGAGGGTTTGGATCTACGAGGCCCTTCGATGGGGCAGGCAGGGAAGCTCGCAGGAGCTACGTTGAGTGGAGCTTGTATTAGTTTCAATGGGTGGGCGATGGAGAAGAAAGGGCCAGTTTTTGTGTCACTGTTTAGTCCTATTGGAATTGTCTGCTCAGTTGTTCTCTTAGTTATCACCTTAGGAGAATTTATCAGTGTTGGAAGGTACTTCAACTATCTTCTAATTCTTACTGATTATAATTACAGCTCAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

120

Amino Acids

12.71

Weight (kDa)

5.21

Isoelectric Point (pI)

25.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47470 AT5G47470 AT5G47470
fragaria_vesca	FvH4_5g19040
malus_domestica	MD04G1063300.v1.1 MD06G1057600.v1.1
prunus_persica	Prupe.5G068400_v2.0.a1
pyrus_communis	pycom04g05700
rosa_chinensis	RchiOBHm_Chr3g0450311 RchiOBHm_Chr6g0263851 RchiOBHm_Chr7g0203481
rosa_laevigata	RLG00000003526
rosa_multiflora	Rmu_sc0011994.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069950 Rroxscaffold_3G00253780 Rroxscaffold_7G00182050
rosa_rugosa	Rorug07G0076200
rosa_samantha	Rh6BG122400 Rh7AG205700 Rh7BG205500 Rh7CG218400 Rh7DG212900 Rh7DG403300
rosa_wichuraiana	Rw7G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AccBSI	CCGCTC	1 cut(s)	7
AccII	CGCG	1 cut(s)	44
AciI	CCGC	3 cut(s)	7, 44, 81
AclWI	GGATC	2 cut(s)	91, 126
AcsI	RAATTY	1 cut(s)	293
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	2 cut(s)	136, 137
AgsI	TTSAA	2 cut(s)	193, 319
AluBI	AGCT	5 cut(s)	31, 154, 164, 179, 354
AluI	AGCT	5 cut(s)	31, 154, 164, 179, 354
Alw21I	GWGCWC	1 cut(s)	42
AlwI	GGATC	2 cut(s)	91, 126
Ama87I	CYCGRG	1 cut(s)	19
AoxI	GGCC	3 cut(s)	16, 127, 218
ApoI	RAATTY	1 cut(s)	293
AspS9I	GGNCC	3 cut(s)	17, 128, 218
AsuHPI	GGTGA	2 cut(s)	64, 274
AvaI	CYCGRG	1 cut(s)	19
AxyI	CCTNAGG	1 cut(s)	286
Bbv12I	GWGCWC	1 cut(s)	42
BccI	CCATC	3 cut(s)	66, 130, 199
BfaI	CTAG	1 cut(s)	26
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
BmeT110I	CYCGRG	1 cut(s)	19
BmgT120I	GGNCC	3 cut(s)	17, 128, 218
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 137
Bse1I	ACTGG	1 cut(s)	221
Bse21I	CCTNAGG	1 cut(s)	286
BseLI	CCNNNNNNNGG	2 cut(s)	136, 137
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	221
Bsh1236I	CGCG	1 cut(s)	44
BshFI	GGCC	3 cut(s)	18, 129, 220
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	136, 137
BsnI	GGCC	3 cut(s)	18, 129, 220
BsoBI	CYCGRG	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	83, 118
BspACI	CCGC	3 cut(s)	7, 44, 81
BspANI	GGCC	3 cut(s)	18, 129, 220
BspCNI	CTCAG	1 cut(s)	275
BspFNI	CGCG	1 cut(s)	44
BspPI	GGATC	2 cut(s)	91, 126
BsrBI	CCGCTC	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	221
BssMI	GATC	2 cut(s)	83, 118
Bst4CI	ACNGT	1 cut(s)	237
BstC8I	GCNNGC	3 cut(s)	42, 144, 156
BstDEI	CTNAG	5 cut(s)	68, 262, 274, 286, 355
BstFNI	CGCG	1 cut(s)	44
BstKTI	GATC	2 cut(s)	86, 121
BstMBI	GATC	2 cut(s)	83, 118
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstUI	CGCG	1 cut(s)	44
BstX2I	RGATCY	2 cut(s)	83, 118
BstYI	RGATCY	2 cut(s)	83, 118
Bsu36I	CCTNAGG	1 cut(s)	286
BsuRI	GGCC	3 cut(s)	18, 129, 220
BtgZI	GCGATG	1 cut(s)	218
BtsIMutI	CAGTG	3 cut(s)	233, 307, 363
Cac8I	GCNNGC	3 cut(s)	42, 144, 156
Cfr13I	GGNCC	3 cut(s)	17, 128, 218
Csp6I	GTAC	1 cut(s)	313
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	5 cut(s)	68, 262, 274, 286, 355
DpnI	GATC	2 cut(s)	85, 120
DpnII	GATC	2 cut(s)	83, 118
EciI	GGCGGA	1 cut(s)	96
Eco81I	CCTNAGG	1 cut(s)	286
Eco88I	CYCGRG	1 cut(s)	19
EcoO109I	RGGNCCY	1 cut(s)	128
FaiI	YATR	1 cut(s)	345
Fnu4HI	GCNGC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	26
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	3 cut(s)	18, 129, 220
HinfI	GANTC	1 cut(s)	55
HphI	GGTGA	2 cut(s)	64, 274
Hpy188I	TCNGA	1 cut(s)	103
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	2 cut(s)	141, 303
HpyCH4III	ACNGT	1 cut(s)	237
HpyCH4IV	ACGT	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	5 cut(s)	68, 262, 274, 286, 355
HpySE526I	ACGT	1 cut(s)	167
Kzo9I	GATC	2 cut(s)	83, 118
LmnI	GCTCC	3 cut(s)	4, 161, 176
LpnPI	CCDG	4 cut(s)	128, 132, 144, 234
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	231
MalI	GATC	2 cut(s)	85, 120
MbiI	CCGCTC	1 cut(s)	7
MboI	GATC	2 cut(s)	83, 118
MboII	GAAGA	2 cut(s)	223, 317
MflI	RGATCY	2 cut(s)	83, 118
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	4 cut(s)	252, 293, 330, 346
MmeI	TCCRAC	2 cut(s)	126, 286
MnlI	CCTC	3 cut(s)	53, 103, 119
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	2 cut(s)	83, 118
NmuCI	GTSAC	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	55
PkrI	GCNGC	1 cut(s)	46
PsiI	TTATAA	1 cut(s)	345
PspPI	GGNCC	3 cut(s)	17, 128, 218
PsuI	RGATCY	2 cut(s)	83, 118
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	2 cut(s)	83, 118
Sau96I	GGNCC	3 cut(s)	17, 128, 218
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	9 cut(s)	33, 64, 156, 166, 170, 181, 287, 314, 356
Sse9I	AATT	4 cut(s)	252, 293, 330, 346
SsiI	CCGC	3 cut(s)	7, 44, 81
SspMI	CTAG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	237
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	2 cut(s)	58, 134
TasI	AATT	4 cut(s)	252, 293, 330, 346
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	55
TscAI	CASTG	3 cut(s)	240, 307, 363
TseFI	GTSAC	1 cut(s)	231
Tsp45I	GTSAC	1 cut(s)	231
TspRI	CASTG	3 cut(s)	240, 307, 363
XapI	RAATTY	1 cut(s)	293
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.