Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007902

Physical Location & Seq

Genomic Coordinates Forward (+)

8262350 .. 8266063

Gene Structure 3714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G068400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGTCGGTGGAAATGCTTAGGATGAAGAGGGAGGTGATTGAAGATGTTGCAATAATAGGGGGATTGGTAGGGGTGCAATTTGTGTATGCTGGGAATTCTGTGTTGCTGAGTTATTTTATGTCTTTGGGGCTTGACCCTCTCACCATTGTTATTTTCTCTACCTTGGCCACTTTCATCATCCTCTCTCCTATTGCTGCTTTTTTTGAAAGGCATACATGGCCCTCGAAAGTCAGCTTGAAGTTGATGATTCAGTTGGTTTTGATCGCCTTTGGAGGGGTAACTGTATTCCAGACCTTATTCCTAAAGGGCATCAAGCTAACTTCACCAGCAATGGCAACAGCCATGCCAAACCTTGCTCCTGGTTTTATTTTCATCATCGCATGTACTGTTAGATTGGAGAGAGTGAAAATTAGTTGCCTCTACAGCAAAGTGAAGATTCTAGGCACATTGCTATGTGTGCTAGGCGCTATCACAATGAGCATAATGCAAAGCACTACCACTCCTGCAGAAAGAGAGGCCCAATTTCAAGCTCATGCTCCTGACGTTGTCTTTGATAAGCAGAAAATTATTGGTTGCTTGTATCTCCTCTCTGCTGTGTTTGTCTTGTCCAGCAATATTGTCTTACAGGCTACAACATTGCGTGATTTTCCTGCACCTATGTCCTTGTGCGCCATAACATCTTTGATAGGGGTGTTTATAACTGCAGCAATACAATTTGTTCAAGATCGCAAGATAGAAACTGGTTGGCCACTTGTGAGTGCAAAAGACTTGGTTGGCTTTTCTCTACTGGCAGGTACAGTGAGTGGAGTATGTGTTAGCTTCAATGGATGGGCAATGAAGAAAAGAGGGCCTGTTTTGGTTTCCATGTTTAGCCCCATTGGAACAGTCTGCTCAGTTGTTCTCTCACTTGTGACATTGGGACAGAGCATCAGTGTTGGAAGCTTTGCTGGCATGTGCCTCATGTTTACTGGCCTCTACTTCTTCCTATGGGCCAAGGGCAAGGAAGTTTACTTAGATGTTGTTGACCTTGAAAGTGAGTTTGATGCAGAGAAGCCTCTATTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

356

Amino Acids

38.45

Weight (kDa)

8.58

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47470 AT5G47470 AT5G47470
fragaria_vesca	FvH4_5g19040
malus_domestica	MD04G1063300.v1.1 MD06G1057600.v1.1
prunus_persica	Prupe.5G068400_v2.0.a1
pyrus_communis	pycom04g05700
rosa_chinensis	RchiOBHm_Chr3g0450311 RchiOBHm_Chr6g0263851 RchiOBHm_Chr7g0203481
rosa_laevigata	RLG00000003526
rosa_multiflora	Rmu_sc0011994.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069950 Rroxscaffold_3G00253780 Rroxscaffold_7G00182050
rosa_rugosa	Rorug07G0076200
rosa_samantha	Rh6BG122400 Rh7AG205700 Rh7BG205500 Rh7CG218400 Rh7DG212900 Rh7DG403300
rosa_wichuraiana	Rw7G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	698
Acc36I	ACCTGC	1 cut(s)	782
AcoI	YGGCCR	2 cut(s)	165, 746
AcsI	RAATTY	1 cut(s)	94
AfaI	GTAC	2 cut(s)	385, 796
AfiI	CCNNNNNNNGG	1 cut(s)	273
AgsI	TTSAA	7 cut(s)	41, 206, 238, 527, 722, 823, 1031
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	5 cut(s)	234, 316, 530, 819, 942
AluI	AGCT	5 cut(s)	234, 316, 530, 819, 942
AoxI	GGCC	7 cut(s)	165, 218, 516, 746, 848, 970, 990
ApeKI	GCWGC	2 cut(s)	194, 704
ApoI	RAATTY	1 cut(s)	94
ArsI	GACNNNNNNTTYG	2 cut(s)	533, 565
AspLEI	GCGC	2 cut(s)	467, 671
AspS9I	GGNCC	4 cut(s)	219, 517, 848, 990
AsuHPI	GGTGA	3 cut(s)	46, 133, 315
BalI	TGGCCA	2 cut(s)	167, 748
BbvI	GCAGC	2 cut(s)	181, 716
BccI	CCATC	1 cut(s)	822
BciT130I	CCWGG	1 cut(s)	360
BfaI	CTAG	2 cut(s)	440, 461
BfmI	CTRYAG	3 cut(s)	421, 504, 702
BfoI	RGCGCY	1 cut(s)	468
BfuAI	ACCTGC	1 cut(s)	782
BisI	GCNGC	2 cut(s)	195, 705
BlsI	GCNGC	2 cut(s)	196, 706
Bme1390I	CCNGG	1 cut(s)	360
BmgT120I	GGNCC	4 cut(s)	219, 517, 848, 990
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	3 cut(s)	318, 936, 1033
Bpu10I	CCTNAGC	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	162, 993
BsaXI	ACNNNNNCTCC	4 cut(s)	484, 514, 798, 828
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
Bse1I	ACTGG	3 cut(s)	745, 792, 973
Bse3DI	GCAATG	4 cut(s)	336, 446, 635, 840
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	162, 993
BseGI	GGATG	3 cut(s)	27, 177, 833
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseMI	GCAATG	4 cut(s)	336, 446, 635, 840
BseMII	CTCAG	2 cut(s)	98, 906
BseNI	ACTGG	3 cut(s)	745, 792, 973
BseRI	GAGGAG	1 cut(s)	575
BseXI	GCAGC	2 cut(s)	181, 716
BseYI	CCCAGC	1 cut(s)	89
BsgI	GTGCAG	1 cut(s)	636
BshFI	GGCC	7 cut(s)	167, 220, 518, 748, 850, 972, 992
BslFI	GGGAC	1 cut(s)	933
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	933
BsnI	GGCC	7 cut(s)	167, 220, 518, 748, 850, 972, 992
Bsp143I	GATC	2 cut(s)	261, 724
BspANI	GGCC	7 cut(s)	167, 220, 518, 748, 850, 972, 992
BspCNI	CTCAG	2 cut(s)	99, 905
BspMAI	CTGCAG	2 cut(s)	508, 706
BspMI	ACCTGC	1 cut(s)	782
BsrDI	GCAATG	4 cut(s)	336, 446, 635, 840
BsrI	ACTGG	3 cut(s)	745, 792, 973
BssECI	CCNNGG	2 cut(s)	162, 993
BssMI	GATC	2 cut(s)	261, 724
BssT1I	CCWWGG	2 cut(s)	162, 993
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	4 cut(s)	283, 388, 799, 886
Bst6I	CTCTTC	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	949
BstDEI	CTNAG	4 cut(s)	17, 107, 892, 1012
BstF5I	GGATG	3 cut(s)	27, 177, 833
BstH2I	RGCGCY	1 cut(s)	468
BstHHI	GCGC	2 cut(s)	467, 671
BstKTI	GATC	2 cut(s)	264, 727
BstMBI	GATC	2 cut(s)	261, 724
BstMWI	GCNNNNNNNGC	4 cut(s)	217, 423, 457, 948
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	2 cut(s)	384, 955
BstSCI	CCNGG	1 cut(s)	358
BstSFI	CTRYAG	3 cut(s)	421, 504, 702
BstV1I	GCAGC	2 cut(s)	181, 716
BsuRI	GGCC	7 cut(s)	167, 220, 518, 748, 850, 972, 992
BtgZI	GCGATG	1 cut(s)	361
BtsCI	GGATG	3 cut(s)	27, 177, 833
BtsIMutI	CAGTG	2 cut(s)	804, 937
BveI	ACCTGC	1 cut(s)	782
Cac8I	GCNNGC	1 cut(s)	949
CfoI	GCGC	2 cut(s)	467, 671
Cfr13I	GGNCC	4 cut(s)	219, 517, 848, 990
Csp6I	GTAC	2 cut(s)	384, 795
CviAII	CATG	7 cut(s)	216, 343, 381, 533, 865, 952, 961
CviQI	GTAC	2 cut(s)	384, 795
DdeI	CTNAG	4 cut(s)	17, 107, 892, 1012
DpnI	GATC	2 cut(s)	263, 726
DpnII	GATC	2 cut(s)	261, 724
EaeI	YGGCCR	2 cut(s)	165, 746
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	162, 993
EcoO109I	RGGNCCY	1 cut(s)	848
EcoRI	GAATTC	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	2 cut(s)	162, 993
ErhI	CCWWGG	2 cut(s)	162, 993
FaeI	CATG	7 cut(s)	219, 346, 384, 536, 868, 955, 964
FaqI	GGGAC	1 cut(s)	933
FatI	CATG	7 cut(s)	215, 342, 380, 532, 864, 951, 960
Fnu4HI	GCNGC	2 cut(s)	195, 705
FokI	GGATG	3 cut(s)	34, 164, 840
Fsp4HI	GCNGC	2 cut(s)	195, 705
FspBI	CTAG	2 cut(s)	440, 461
GlaI	GCGC	2 cut(s)	466, 670
GluI	GCNGC	2 cut(s)	195, 705
GsaI	CCCAGC	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	468
HaeIII	GGCC	7 cut(s)	167, 220, 518, 748, 850, 972, 992
HhaI	GCGC	2 cut(s)	467, 671
Hin1II	CATG	7 cut(s)	219, 346, 384, 536, 868, 955, 964
Hin6I	GCGC	2 cut(s)	465, 669
HinP1I	GCGC	2 cut(s)	465, 669
HincII	GTYRAC	1 cut(s)	1024
HindII	GTYRAC	1 cut(s)	1024
HindIII	AAGCTT	1 cut(s)	940
HinfI	GANTC	2 cut(s)	247, 436
HphI	GGTGA	3 cut(s)	46, 133, 315
Hpy166II	GTNNAC	3 cut(s)	966, 1009, 1024
Hpy188III	TCNNGA	3 cut(s)	289, 539, 722
Hpy8I	GTNNAC	3 cut(s)	966, 1009, 1024
HpyCH4III	ACNGT	4 cut(s)	283, 388, 799, 886
HpyCH4IV	ACGT	1 cut(s)	543
HpyCH4V	TGCA	8 cut(s)	50, 76, 487, 506, 653, 704, 761, 1046
HpyF10VI	GCNNNNNNNGC	4 cut(s)	217, 423, 457, 948
HpyF3I	CTNAG	4 cut(s)	17, 107, 892, 1012
HpySE526I	ACGT	1 cut(s)	543
Hsp92II	CATG	7 cut(s)	219, 346, 384, 536, 868, 955, 964
HspAI	GCGC	2 cut(s)	465, 669
Kzo9I	GATC	2 cut(s)	261, 724
LmnI	GCTCC	2 cut(s)	361, 541
Lsp1109I	GCAGC	2 cut(s)	181, 716
LweI	GCATC	3 cut(s)	318, 936, 1033
MaeI	CTAG	2 cut(s)	440, 461
MaeII	ACGT	1 cut(s)	543
MaeIII	GTNAC	2 cut(s)	277, 910
MalI	GATC	2 cut(s)	263, 726
MboI	GATC	2 cut(s)	261, 724
MboII	GAAGA	5 cut(s)	37, 53, 445, 850, 973
MlsI	TGGCCA	2 cut(s)	167, 748
MluCI	AATT	6 cut(s)	77, 94, 408, 521, 564, 713
MluNI	TGGCCA	2 cut(s)	167, 748
MmeI	TCCRAC	1 cut(s)	916
Mox20I	TGGCCA	2 cut(s)	167, 748
MscI	TGGCCA	2 cut(s)	167, 748
MseI	TTAA	1 cut(s)	1061
MslI	CAYNNNNRTG	1 cut(s)	451
Msp20I	TGGCCA	2 cut(s)	167, 748
MspR9I	CCNGG	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	4 cut(s)	217, 423, 457, 948
NdeII	GATC	2 cut(s)	261, 724
NlaIII	CATG	7 cut(s)	219, 346, 384, 536, 868, 955, 964
NmuCI	GTSAC	1 cut(s)	910
NspI	RCATGY	2 cut(s)	384, 955
PfeI	GAWTC	2 cut(s)	247, 436
PflFI	GACNNNGTC	1 cut(s)	545
PkrI	GCNGC	2 cut(s)	196, 706
PsiI	TTATAA	1 cut(s)	698
Psp6I	CCWGG	1 cut(s)	358
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	358
PspPI	GGNCC	4 cut(s)	219, 517, 848, 990
PstI	CTGCAG	2 cut(s)	508, 706
PsyI	GACNNNGTC	1 cut(s)	545
RsaI	GTAC	2 cut(s)	385, 796
RsaNI	GTAC	2 cut(s)	384, 795
RseI	CAYNNNNRTG	1 cut(s)	451
SaqAI	TTAA	1 cut(s)	1061
SatI	GCNGC	2 cut(s)	195, 705
Sau3AI	GATC	2 cut(s)	261, 724
Sau96I	GGNCC	4 cut(s)	219, 517, 848, 990
ScrFI	CCNGG	1 cut(s)	360
SfaNI	GCATC	3 cut(s)	318, 936, 1033
SfcI	CTRYAG	3 cut(s)	421, 504, 702
SmiMI	CAYNNNNRTG	1 cut(s)	451
Sse9I	AATT	6 cut(s)	77, 94, 408, 521, 564, 713
SspI	AATATT	1 cut(s)	616
SspMI	CTAG	2 cut(s)	440, 461
StyD4I	CCNGG	1 cut(s)	358
StyI	CCWWGG	2 cut(s)	162, 993
TaaI	ACNGT	4 cut(s)	283, 388, 799, 886
TaiI	ACGT	1 cut(s)	546
TaqI	TCGA	1 cut(s)	224
TasI	AATT	6 cut(s)	77, 94, 408, 521, 564, 713
TatI	WGTACW	1 cut(s)	383
TfiI	GAWTC	2 cut(s)	247, 436
Tru1I	TTAA	1 cut(s)	1061
Tru9I	TTAA	1 cut(s)	1061
TscAI	CASTG	2 cut(s)	804, 937
TseFI	GTSAC	1 cut(s)	910
TseI	GCWGC	2 cut(s)	194, 704
Tsp45I	GTSAC	1 cut(s)	910
TspDTI	ATGAA	4 cut(s)	38, 163, 361, 851
TspRI	CASTG	2 cut(s)	804, 937
Tth111I	GACNNNGTC	1 cut(s)	545
XapI	RAATTY	1 cut(s)	94
XceI	RCATGY	2 cut(s)	384, 955
XspI	CTAG	2 cut(s)	440, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.