Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007902

Physical Location & Seq

Genomic Coordinates Forward (+)

5479634 .. 5483114

Gene Structure 3481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g05700.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGAGGAAATATTGTTCAGGATGAAGAGGGAGGTGATTGAAGATGTTGCGATAATAGGGGGGTTGGTAGGGATGCAATTTGTGTATGCTGGGAATGCTGTGTTGCTAAGCTATGTCATGTCTTTGGGGCTTAACCCTCTCACCATTGTTATCTTCTCTACCTTGTCCACCTTCATCGTCCTCTCTCCCATTGCCGCTTATTTTGAAAGGCACACATGGCCGAAGAAAATCAGCTTGAAGTTCTTGATACAGTTGCTTTTGATCGCCCTTGGAGGGGTAACTTTGTTCCAGACATTATTTCTTAAGGGGATCCAGTTGACTTCACCAGCAATGGCAGCAGCCATGCCAAACCTTGCTCCTGGATTTATTTTCGTCATCGCGTGTACTGTTAGATTGGAGAGAGTGAAAATTAGTTGCCTATACAGCAAAATGAAGATTCTAGGCACAATTCTGTGTGTGGTAGGAGCTATCACAATGAGCGTAATGCAAAGCACTGCCAGTCCTTCCGAAGCAGAAGCACAGCCCCAATTTCGAGCTCTTTCTCCTGAATCACTCTTTGATAAGCAAAAGATCATTGGTTGCTTGTACCTCCTTGCTGCTGTGTTTGTTTTGTCCAGTAATATTGTCTTGCAGGCTACAACATTGGGTGATTTTCCTGCACCTATCTCCTTGTGCGCCATAACATCTTTGATAGGGGTGTTTCTAACTGCAGCTGTACAATTTATTCAAGATCACAAAATAGAAACTGGTTGGCCACTTGTGAGTGCAAAACAATTGATTGGCTTCTCTCTACTGGGAGGTGTAGTAAGCGGAGCATGTGTGAGCTTCAACGGATGGGCAATGAAGAAAAGAGGGCCGGTTTTGGTTTCCATGTTTAGCCCCATCGGAACAGTTTGCTCGGTTGTTCTCTCAGTTATCACATTGGGAGATGCCATTAGCGTTGGAAGCTTTGCCGGTATGTGCCTCATGTTTACTGGGCTCTACTTCTTCCTATGGGCAAAGGGGAAGGAAGGCTACTTAGATGTGCGTGACTTAGAAAGTGAGTTTGATGCAGAGAAGCCTCTGTTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

358

Amino Acids

38.51

Weight (kDa)

8.32

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47470 AT5G47470 AT5G47470
fragaria_vesca	FvH4_5g19040
malus_domestica	MD04G1063300.v1.1 MD06G1057600.v1.1
prunus_persica	Prupe.5G068400_v2.0.a1
pyrus_communis	pycom04g05700
rosa_chinensis	RchiOBHm_Chr3g0450311 RchiOBHm_Chr6g0263851 RchiOBHm_Chr7g0203481
rosa_laevigata	RLG00000003526
rosa_multiflora	Rmu_sc0011994.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069950 Rroxscaffold_3G00253780 Rroxscaffold_7G00182050
rosa_rugosa	Rorug07G0076200
rosa_samantha	Rh6BG122400 Rh7AG205700 Rh7BG205500 Rh7CG218400 Rh7DG212900 Rh7DG403300
rosa_wichuraiana	Rw7G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	380
AciI	CCGC	2 cut(s)	195, 810
AclWI	GGATC	2 cut(s)	304, 317
AcoI	YGGCCR	2 cut(s)	218, 752
AfaI	GTAC	3 cut(s)	385, 587, 717
AfiI	CCNNNNNNNGG	2 cut(s)	273, 274
AflII	CTTAAG	1 cut(s)	302
AgsI	TTSAA	5 cut(s)	41, 206, 238, 728, 829
AjnI	CCWGG	1 cut(s)	358
AloI	GAACNNNNNNTCC	1 cut(s)	31
AluBI	AGCT	7 cut(s)	111, 234, 467, 536, 713, 825, 948
AluI	AGCT	7 cut(s)	111, 234, 467, 536, 713, 825, 948
Alw21I	GWGCWC	1 cut(s)	538
AlwI	GGATC	2 cut(s)	304, 317
AoxI	GGCC	3 cut(s)	218, 752, 854
ApeKI	GCWGC	4 cut(s)	335, 338, 596, 710
AspLEI	GCGC	1 cut(s)	677
AspS9I	GGNCC	1 cut(s)	854
AsuHPI	GGTGA	4 cut(s)	46, 133, 315, 659
BalI	TGGCCA	1 cut(s)	754
BamHI	GGATCC	1 cut(s)	309
BanII	GRGCYC	2 cut(s)	538, 981
BarI	GAAGNNNNNNTAC	2 cut(s)	998, 1030
Bbv12I	GWGCWC	1 cut(s)	538
BbvI	GCAGC	4 cut(s)	347, 350, 583, 722
BccI	CCATC	2 cut(s)	828, 890
BciT130I	CCWGG	1 cut(s)	360
BfaI	CTAG	1 cut(s)	440
BfmI	CTRYAG	1 cut(s)	708
BfrI	CTTAAG	1 cut(s)	302
BisI	GCNGC	5 cut(s)	195, 336, 339, 597, 711
BlpI	GCTNAGC	1 cut(s)	107
BlsI	GCNGC	5 cut(s)	196, 337, 340, 598, 712
Bme1390I	CCNGG	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	854
BmiI	GGNNCC	1 cut(s)	311
BmrFI	CCNGG	1 cut(s)	360
BmrI	ACTGGG	2 cut(s)	803, 984
BmsI	GCATC	3 cut(s)	63, 919, 1039
BmuI	ACTGGG	2 cut(s)	803, 984
Bpu1102I	GCTNAGC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	268
BsaXI	ACNNNNNCTCC	4 cut(s)	789, 804, 819, 834
Bsc4I	CCNNNNNNNGG	2 cut(s)	273, 274
Bse118I	RCCGGY	2 cut(s)	856, 953
Bse1I	ACTGG	6 cut(s)	313, 498, 615, 751, 798, 979
Bse3DI	GCAATG	3 cut(s)	189, 336, 846
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	3 cut(s)	27, 78, 839
BseLI	CCNNNNNNNGG	2 cut(s)	273, 274
BseMI	GCAATG	3 cut(s)	189, 336, 846
BseMII	CTCAG	1 cut(s)	924
BseNI	ACTGG	6 cut(s)	313, 498, 615, 751, 798, 979
BseXI	GCAGC	4 cut(s)	347, 350, 583, 722
BseYI	CCCAGC	1 cut(s)	89
BsgI	GTGCAG	1 cut(s)	642
Bsh1236I	CGCG	1 cut(s)	380
BshFI	GGCC	3 cut(s)	220, 754, 856
BsiHKAI	GWGCWC	1 cut(s)	538
BsiSI	CCGG	2 cut(s)	857, 954
BslI	CCNNNNNNNGG	2 cut(s)	273, 274
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	3 cut(s)	220, 754, 856
Bsp1286I	GDGCHC	2 cut(s)	538, 981
Bsp1407I	TGTACA	1 cut(s)	715
Bsp143I	GATC	4 cut(s)	261, 309, 570, 730
Bsp1720I	GCTNAGC	1 cut(s)	107
BspACI	CCGC	2 cut(s)	195, 810
BspANI	GGCC	3 cut(s)	220, 754, 856
BspCNI	CTCAG	1 cut(s)	923
BspFNI	CGCG	1 cut(s)	380
BspLI	GGNNCC	1 cut(s)	311
BspMAI	CTGCAG	1 cut(s)	712
BspPI	GGATC	2 cut(s)	304, 317
BspTI	CTTAAG	1 cut(s)	302
BsrDI	GCAATG	3 cut(s)	189, 336, 846
BsrFI	RCCGGY	2 cut(s)	856, 953
BsrGI	TGTACA	1 cut(s)	715
BsrI	ACTGG	6 cut(s)	313, 498, 615, 751, 798, 979
BssAI	RCCGGY	2 cut(s)	856, 953
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	4 cut(s)	261, 309, 570, 730
BssT1I	CCWWGG	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	3 cut(s)	252, 388, 892
Bst6I	CTCTTC	1 cut(s)	20
BstAFI	CTTAAG	1 cut(s)	302
BstAUI	TGTACA	1 cut(s)	715
BstC8I	GCNNGC	1 cut(s)	633
BstDEI	CTNAG	4 cut(s)	107, 910, 1018, 1033
BstF5I	GGATG	3 cut(s)	27, 78, 839
BstFNI	CGCG	1 cut(s)	380
BstHHI	GCGC	1 cut(s)	677
BstKTI	GATC	4 cut(s)	264, 312, 573, 733
BstMBI	GATC	4 cut(s)	261, 309, 570, 730
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 217, 335, 423, 945
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	1 cut(s)	819
BstSCI	CCNGG	1 cut(s)	358
BstSFI	CTRYAG	1 cut(s)	708
BstUI	CGCG	1 cut(s)	380
BstV1I	GCAGC	4 cut(s)	347, 350, 583, 722
BstX2I	RGATCY	1 cut(s)	309
BstYI	RGATCY	1 cut(s)	309
BsuRI	GGCC	3 cut(s)	220, 754, 856
BtgZI	GCGATG	1 cut(s)	361
BtsCI	GGATG	3 cut(s)	27, 78, 839
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	1 cut(s)	633
CfoI	GCGC	1 cut(s)	677
Cfr10I	RCCGGY	2 cut(s)	856, 953
Cfr13I	GGNCC	1 cut(s)	854
Csp6I	GTAC	3 cut(s)	384, 586, 716
CviAII	CATG	6 cut(s)	118, 216, 343, 816, 871, 967
CviQI	GTAC	3 cut(s)	384, 586, 716
DdeI	CTNAG	4 cut(s)	107, 910, 1018, 1033
DpnI	GATC	4 cut(s)	263, 311, 572, 732
DpnII	GATC	4 cut(s)	261, 309, 570, 730
EaeI	YGGCCR	2 cut(s)	218, 752
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	536
Eco130I	CCWWGG	1 cut(s)	268
Eco24I	GRGCYC	2 cut(s)	538, 981
Eco53kI	GAGCTC	1 cut(s)	536
EcoICRI	GAGCTC	1 cut(s)	536
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	268
EcoT38I	GRGCYC	2 cut(s)	538, 981
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	6 cut(s)	121, 219, 346, 819, 874, 970
FatI	CATG	6 cut(s)	117, 215, 342, 815, 870, 966
Fnu4HI	GCNGC	5 cut(s)	195, 336, 339, 597, 711
FokI	GGATG	3 cut(s)	34, 85, 846
FriOI	GRGCYC	2 cut(s)	538, 981
Fsp4HI	GCNGC	5 cut(s)	195, 336, 339, 597, 711
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	1 cut(s)	676
GluI	GCNGC	5 cut(s)	195, 336, 339, 597, 711
GsaI	CCCAGC	1 cut(s)	93
HaeIII	GGCC	3 cut(s)	220, 754, 856
HapII	CCGG	2 cut(s)	857, 954
HhaI	GCGC	1 cut(s)	677
Hin1II	CATG	6 cut(s)	121, 219, 346, 819, 874, 970
Hin6I	GCGC	1 cut(s)	675
HinP1I	GCGC	1 cut(s)	675
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HindIII	AAGCTT	1 cut(s)	946
HinfI	GANTC	2 cut(s)	436, 548
HpaII	CCGG	2 cut(s)	857, 954
HphI	GGTGA	4 cut(s)	46, 133, 315, 659
Hpy166II	GTNNAC	4 cut(s)	168, 318, 384, 972
Hpy188I	TCNGA	2 cut(s)	508, 887
Hpy188III	TCNNGA	5 cut(s)	19, 244, 289, 545, 728
Hpy8I	GTNNAC	4 cut(s)	168, 318, 384, 972
HpyAV	CCTTC	4 cut(s)	181, 513, 1000, 1004
HpyCH4III	ACNGT	3 cut(s)	252, 388, 892
HpyCH4V	TGCA	7 cut(s)	76, 487, 631, 659, 710, 767, 1052
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 217, 335, 423, 945
HpyF3I	CTNAG	4 cut(s)	107, 910, 1018, 1033
Hsp92II	CATG	6 cut(s)	121, 219, 346, 819, 874, 970
HspAI	GCGC	1 cut(s)	675
Kzo9I	GATC	4 cut(s)	261, 309, 570, 730
LmnI	GCTCC	3 cut(s)	361, 464, 812
Lsp1109I	GCAGC	4 cut(s)	347, 350, 583, 722
LweI	GCATC	3 cut(s)	63, 919, 1039
MaeI	CTAG	1 cut(s)	440
MaeIII	GTNAC	2 cut(s)	277, 1028
MalI	GATC	4 cut(s)	263, 311, 572, 732
MboI	GATC	4 cut(s)	261, 309, 570, 730
MboII	GAAGA	7 cut(s)	37, 53, 145, 235, 445, 856, 979
MfeI	CAATTG	1 cut(s)	773
MflI	RGATCY	1 cut(s)	309
MhlI	GDGCHC	2 cut(s)	538, 981
MlsI	TGGCCA	1 cut(s)	754
MluCI	AATT	6 cut(s)	77, 408, 447, 527, 719, 773
MluNI	TGGCCA	1 cut(s)	754
MmeI	TCCRAC	1 cut(s)	922
Mox20I	TGGCCA	1 cut(s)	754
MscI	TGGCCA	1 cut(s)	754
MseI	TTAA	2 cut(s)	132, 303
Msp20I	TGGCCA	1 cut(s)	754
MspA1I	CMGCKG	1 cut(s)	713
MspCI	CTTAAG	1 cut(s)	302
MspI	CCGG	2 cut(s)	857, 954
MspR9I	CCNGG	1 cut(s)	360
MunI	CAATTG	1 cut(s)	773
Mva1269I	GAATGC	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	360
MvnI	CGCG	1 cut(s)	380
MwoI	GCNNNNNNNGC	5 cut(s)	95, 217, 335, 423, 945
NdeII	GATC	4 cut(s)	261, 309, 570, 730
NlaIII	CATG	6 cut(s)	121, 219, 346, 819, 874, 970
NlaIV	GGNNCC	1 cut(s)	311
NmuCI	GTSAC	1 cut(s)	1028
NspI	RCATGY	1 cut(s)	819
PctI	GAATGC	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	436, 548
PfoI	TCCNGGA	1 cut(s)	358
PkrI	GCNGC	5 cut(s)	196, 337, 340, 598, 712
Psp124BI	GAGCTC	1 cut(s)	538
Psp6I	CCWGG	1 cut(s)	358
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	311
PspPI	GGNCC	1 cut(s)	854
PstI	CTGCAG	1 cut(s)	712
PsuI	RGATCY	1 cut(s)	309
PvuII	CAGCTG	1 cut(s)	713
RsaI	GTAC	3 cut(s)	385, 587, 717
RsaNI	GTAC	3 cut(s)	384, 586, 716
SacI	GAGCTC	1 cut(s)	538
SaqAI	TTAA	2 cut(s)	132, 303
SatI	GCNGC	5 cut(s)	195, 336, 339, 597, 711
Sau3AI	GATC	4 cut(s)	261, 309, 570, 730
Sau96I	GGNCC	1 cut(s)	854
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	2 cut(s)	538, 981
SfaNI	GCATC	3 cut(s)	63, 919, 1039
SfcI	CTRYAG	1 cut(s)	708
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	6 cut(s)	77, 408, 447, 527, 719, 773
SsiI	CCGC	2 cut(s)	195, 810
SspI	AATATT	2 cut(s)	12, 622
SspMI	CTAG	1 cut(s)	440
SstI	GAGCTC	1 cut(s)	538
StyD4I	CCNGG	1 cut(s)	358
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	3 cut(s)	252, 388, 892
TaqI	TCGA	1 cut(s)	532
TasI	AATT	6 cut(s)	77, 408, 447, 527, 719, 773
TatI	WGTACW	2 cut(s)	383, 715
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	2 cut(s)	436, 548
Tru1I	TTAA	2 cut(s)	132, 303
Tru9I	TTAA	2 cut(s)	132, 303
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	1028
TseI	GCWGC	4 cut(s)	335, 338, 596, 710
Tsp45I	GTSAC	1 cut(s)	1028
TspDTI	ATGAA	4 cut(s)	38, 163, 446, 857
TspGWI	ACGGA	1 cut(s)	846
TspRI	CASTG	1 cut(s)	499
Vha464I	CTTAAG	1 cut(s)	302
XceI	RCATGY	1 cut(s)	819
XspI	CTAG	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.