Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0016345

Physical Location & Seq

Genomic Coordinates Forward (+)

11879425 .. 11880522

Gene Structure 1098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g20142.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTATTTTGAGAAACGTTCATTCGAGAGCGAAGTGTGGCTCACAAGCGACCCCAATCGATGGGAAGGCGAGGACTCGGTTGAGATCAAGATAAAGATCTACACTAAGATGGGAGTCTCCTTGAAACCTGGTAAAACCATGTCTGATGGCATACCTTACCACCATAAAGGTGACGAACTCGTCATCTCTGATCTTCCTCGAAGCGAGCTATTATCCAACAGGAGTGAGTATACATGGAGAATGGTCGACTTCTTTTCACGCCGATTTAAGGAGGAGCCACTCCCCGATCATGTACGACGATCTTGTATTGAAGAAGTATTCCGGGTGGCCGAAAAAGAAGATCCAGCAGTGGCCTCAACAGCTTCTGTCATTCATGTCGACATAGTGGAAGTGAAGGAGTGCTTGTTCACATCTGCTTGCGATGCTTTTCTAGACGATGCGATATCATCAGTTGAGGGTATGGAGAAAGAGAGAGTTGATGGCTGCTTCTTGGGGTTTGAAGACTCTTGTGTTATTTGTATGGAGGACCTAGTTGATAAAAAAGGCAAGAAACAATTCAAACAACAGCCCAAGAGGAAGAGCAAGAGGCTGCTTGGACTACAAAGCAGTAGCGGCACCATCGCTAAGACGCCAAGAAAAGAGCCACCCCCTTTGAGGGTAGTTGCTCGGTTGCCTTGCTCACACCGTTTCCATGGAGACTGCATTGTCAACTGGCTCAAAAACAATCATGTATGTCCTCTTTGCCGATACCAAGTGGTTGGTCAGCCATCGTTAACTAAGCTATTTCAAGTGGTTAATTGTAATAATTGGTCACTCTGTGAGCCATGCCCAACAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

280

Amino Acids

31.95

Weight (kDa)

7.02

Isoelectric Point (pI)

55.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	220 - 249	1.1e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	221 - 249	1e-09	Ring finger domain
zf-C3HC4	PF00097	223 - 248	3.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	224 - 248	1.1e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016345)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20142 FvH4_5g20161 FvH4_5g20170
rosa_laevigata	RLG00000003397 RLG00000003399
rosa_multiflora	Rmu_sc0005112.1_g000002 Rmu_sc0005112.1_g000003 Rmu_sc0009349.1_g000015
rosa_samantha	Rh7AG218900 Rh7AG219200 Rh7BG215400 Rh7CG231900 Rh7CG232100 Rh7DG226300 Rh7DG226500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	179, 704
AccB1I	GGYRCC	1 cut(s)	614
AccB7I	CCANNNNNTGG	1 cut(s)	60
AccI	GTMKAC	3 cut(s)	230, 246, 378
AciI	CCGC	1 cut(s)	612
AclI	AACGTT	1 cut(s)	16
AclWI	GGATC	1 cut(s)	335
AcoI	YGGCCR	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	629
AdeI	CACNNNGTG	1 cut(s)	818
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	4 cut(s)	60, 268, 654, 655
AgsI	TTSAA	5 cut(s)	124, 311, 500, 559, 788
AjnI	CCWGG	1 cut(s)	127
AloI	GAACNNNNNNTCC	2 cut(s)	389, 421
AluBI	AGCT	3 cut(s)	208, 362, 781
AluI	AGCT	3 cut(s)	208, 362, 781
Alw26I	GTCTC	2 cut(s)	121, 690
AlwI	GGATC	1 cut(s)	335
AlwNI	CAGNNNCTG	1 cut(s)	365
AoxI	GGCC	2 cut(s)	327, 351
ApeKI	GCWGC	2 cut(s)	483, 589
Asp700I	GAANNNNTTC	1 cut(s)	554
AspS9I	GGNCC	1 cut(s)	526
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	526
BanI	GGYRCC	1 cut(s)	614
BbsI	GAAGAC	1 cut(s)	507
BbvI	GCAGC	2 cut(s)	470, 576
BccI	CCATC	6 cut(s)	54, 103, 140, 473, 626, 775
BciT130I	CCWGG	1 cut(s)	129
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	2 cut(s)	121, 690
BfaI	CTAG	2 cut(s)	431, 530
BglII	AGATCT	1 cut(s)	96
BisI	GCNGC	3 cut(s)	484, 590, 613
BlsI	GCNGC	3 cut(s)	485, 591, 614
Bme1390I	CCNGG	2 cut(s)	129, 323
Bme18I	GGWCC	1 cut(s)	526
BmgT120I	GGNCC	1 cut(s)	526
BmiI	GGNNCC	2 cut(s)	276, 616
BmrFI	CCNGG	2 cut(s)	129, 323
BmsI	GCATC	2 cut(s)	412, 427
BpiI	GAAGAC	1 cut(s)	507
BpuMI	CCSGG	1 cut(s)	323
Bsa29I	ATCGAT	1 cut(s)	58
BsaBI	GATNNNNATC	1 cut(s)	95
BsaHI	GRCGYC	1 cut(s)	629
BsaJI	CCNNGG	1 cut(s)	691
BsaXI	ACNNNNNCTCC	2 cut(s)	389, 419
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 268, 654, 655
Bse1I	ACTGG	1 cut(s)	716
Bse8I	GATNNNNATC	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	129
BseCI	ATCGAT	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	691
BseJI	GATNNNNATC	1 cut(s)	95
BseLI	CCNNNNNNNGG	4 cut(s)	60, 268, 654, 655
BseNI	ACTGG	1 cut(s)	716
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	470, 576
BshFI	GGCC	2 cut(s)	329, 353
BshNI	GGYRCC	1 cut(s)	614
BshVI	ATCGAT	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	322
BslI	CCNNNNNNNGG	4 cut(s)	60, 268, 654, 655
BsmAI	GTCTC	2 cut(s)	121, 690
BsnI	GGCC	2 cut(s)	329, 353
Bsp143I	GATC	6 cut(s)	84, 96, 190, 286, 299, 340
Bsp19I	CCATGG	1 cut(s)	691
BspACI	CCGC	1 cut(s)	612
BspANI	GGCC	2 cut(s)	329, 353
BspDI	ATCGAT	1 cut(s)	58
BspLI	GGNNCC	2 cut(s)	276, 616
BspPI	GGATC	1 cut(s)	335
BspQI	GCTCTTC	1 cut(s)	572
BspT107I	GGYRCC	1 cut(s)	614
BsrI	ACTGG	1 cut(s)	716
BssECI	CCNNGG	1 cut(s)	691
BssMI	GATC	6 cut(s)	84, 96, 190, 286, 299, 340
BssNAI	GTATAC	1 cut(s)	231
BssNI	GRCGYC	1 cut(s)	629
BssT1I	CCWWGG	1 cut(s)	691
Bst1107I	GTATAC	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	686
Bst6I	CTCTTC	1 cut(s)	572
BstACI	GRCGYC	1 cut(s)	629
BstC8I	GCNNGC	2 cut(s)	206, 418
BstDEI	CTNAG	3 cut(s)	105, 624, 777
BstDSI	CCRYGG	1 cut(s)	691
BstKTI	GATC	6 cut(s)	87, 99, 193, 289, 302, 343
BstMAI	GTCTC	2 cut(s)	121, 690
BstMBI	GATC	6 cut(s)	84, 96, 190, 286, 299, 340
BstMWI	GCNNNNNNNGC	3 cut(s)	359, 422, 612
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	2 cut(s)	127, 321
BstV1I	GCAGC	2 cut(s)	470, 576
BstV2I	GAAGAC	1 cut(s)	507
BstX2I	RGATCY	2 cut(s)	96, 340
BstXI	CCANNNNNNTGG	1 cut(s)	758
BstYI	RGATCY	2 cut(s)	96, 340
BstZ17I	GTATAC	1 cut(s)	231
Bsu15I	ATCGAT	1 cut(s)	58
BsuRI	GGCC	2 cut(s)	329, 353
BsuTUI	ATCGAT	1 cut(s)	58
BtgI	CCRYGG	1 cut(s)	691
BtgZI	GCGATG	2 cut(s)	435, 604
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	2 cut(s)	206, 418
CaiI	CAGNNNCTG	1 cut(s)	365
Cfr13I	GGNCC	1 cut(s)	526
ClaI	ATCGAT	1 cut(s)	58
CseI	GACGC	1 cut(s)	637
CsiI	ACCWGGT	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	293
CspCI	CAANNNNNGTGG	2 cut(s)	633, 668
CviAII	CATG	7 cut(s)	139, 234, 290, 374, 692, 728, 825
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	3 cut(s)	105, 624, 777
DpnI	GATC	6 cut(s)	86, 98, 192, 288, 301, 342
DpnII	GATC	6 cut(s)	84, 96, 190, 286, 299, 340
DraIII	CACNNNGTG	1 cut(s)	818
DrdI	GACNNNNNNGTC	2 cut(s)	179, 704
DseDI	GACNNNNNNGTC	2 cut(s)	179, 704
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	572
EarI	CTCTTC	1 cut(s)	572
Eco130I	CCWWGG	1 cut(s)	691
Eco32I	GATATC	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	526
EcoO109I	RGGNCCY	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	127
EcoRV	GATATC	1 cut(s)	444
EcoT14I	CCWWGG	1 cut(s)	691
ErhI	CCWWGG	1 cut(s)	691
FaeI	CATG	7 cut(s)	142, 237, 293, 377, 695, 731, 828
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FatI	CATG	7 cut(s)	138, 233, 289, 373, 691, 727, 824
FblI	GTMKAC	3 cut(s)	230, 246, 378
Fnu4HI	GCNGC	3 cut(s)	484, 590, 613
Fsp4HI	GCNGC	3 cut(s)	484, 590, 613
FspBI	CTAG	2 cut(s)	431, 530
GluI	GCNGC	3 cut(s)	484, 590, 613
HaeIII	GGCC	2 cut(s)	329, 353
HapII	CCGG	1 cut(s)	322
HgaI	GACGC	1 cut(s)	637
Hin1I	GRCGYC	1 cut(s)	629
Hin1II	CATG	7 cut(s)	142, 237, 293, 377, 695, 731, 828
HincII	GTYRAC	4 cut(s)	247, 379, 709, 774
HindII	GTYRAC	4 cut(s)	247, 379, 709, 774
HinfI	GANTC	3 cut(s)	74, 114, 503
HpaI	GTTAAC	1 cut(s)	774
HpaII	CCGG	1 cut(s)	322
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	6 cut(s)	231, 247, 379, 408, 709, 774
Hpy188I	TCNGA	2 cut(s)	145, 190
Hpy188III	TCNNGA	3 cut(s)	25, 88, 431
Hpy8I	GTNNAC	6 cut(s)	231, 247, 379, 408, 709, 774
Hpy99I	CGWCG	1 cut(s)	300
HpyAV	CCTTC	2 cut(s)	59, 388
HpyCH4III	ACNGT	1 cut(s)	686
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	1 cut(s)	702
HpyF10VI	GCNNNNNNNGC	3 cut(s)	359, 422, 612
HpyF3I	CTNAG	3 cut(s)	105, 624, 777
HpySE526I	ACGT	1 cut(s)	16
Hsp92I	GRCGYC	1 cut(s)	629
Hsp92II	CATG	7 cut(s)	142, 237, 293, 377, 695, 731, 828
KspAI	GTTAAC	1 cut(s)	774
Kzo9I	GATC	6 cut(s)	84, 96, 190, 286, 299, 340
LguI	GCTCTTC	1 cut(s)	572
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	6 cut(s)	114, 141, 205, 335, 357, 697
Lsp1109I	GCAGC	2 cut(s)	470, 576
LweI	GCATC	2 cut(s)	412, 427
MabI	ACCWGGT	1 cut(s)	127
MaeI	CTAG	2 cut(s)	431, 530
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	2 cut(s)	170, 810
MalI	GATC	6 cut(s)	86, 98, 192, 288, 301, 342
MboI	GATC	6 cut(s)	84, 96, 190, 286, 299, 340
MboII	GAAGA	5 cut(s)	185, 323, 350, 512, 589
MflI	RGATCY	2 cut(s)	96, 340
MluCI	AATT	3 cut(s)	554, 796, 805
MlyI	GAGTC	3 cut(s)	68, 123, 497
MmeI	TCCRAC	1 cut(s)	240
MroXI	GAANNNNTTC	1 cut(s)	554
MseI	TTAA	3 cut(s)	267, 773, 795
MslI	CAYNNNNRTG	2 cut(s)	107, 168
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	2 cut(s)	129, 323
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	3 cut(s)	359, 422, 612
NciI	CCSGG	1 cut(s)	323
NcoI	CCATGG	1 cut(s)	691
NdeII	GATC	6 cut(s)	84, 96, 190, 286, 299, 340
NlaIII	CATG	7 cut(s)	142, 237, 293, 377, 695, 731, 828
NlaIV	GGNNCC	2 cut(s)	276, 616
NmuCI	GTSAC	2 cut(s)	170, 810
PciSI	GCTCTTC	1 cut(s)	572
PdmI	GAANNNNTTC	1 cut(s)	554
PflMI	CCANNNNNTGG	1 cut(s)	60
PkrI	GCNGC	3 cut(s)	485, 591, 614
PleI	GAGTC	3 cut(s)	68, 122, 497
PpsI	GAGTC	3 cut(s)	68, 122, 497
PpuMI	RGGWCCY	1 cut(s)	526
Psp1406I	AACGTT	1 cut(s)	16
Psp5II	RGGWCCY	1 cut(s)	526
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	2 cut(s)	276, 616
PspPI	GGNCC	1 cut(s)	526
PspPPI	RGGWCCY	1 cut(s)	526
PstNI	CAGNNNCTG	1 cut(s)	365
PsuI	RGATCY	2 cut(s)	96, 340
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
RseI	CAYNNNNRTG	2 cut(s)	107, 168
SalI	GTCGAC	2 cut(s)	245, 377
SapI	GCTCTTC	1 cut(s)	572
SaqAI	TTAA	3 cut(s)	267, 773, 795
SatI	GCNGC	3 cut(s)	484, 590, 613
Sau3AI	GATC	6 cut(s)	84, 96, 190, 286, 299, 340
Sau96I	GGNCC	1 cut(s)	526
SchI	GAGTC	3 cut(s)	68, 123, 497
ScrFI	CCNGG	2 cut(s)	129, 323
SetI	ASST	8 cut(s)	19, 130, 157, 172, 210, 364, 531, 783
SexAI	ACCWGGT	1 cut(s)	127
SfaNI	GCATC	2 cut(s)	412, 427
SinI	GGWCC	1 cut(s)	526
SmiMI	CAYNNNNRTG	2 cut(s)	107, 168
Sse9I	AATT	3 cut(s)	554, 796, 805
SsiI	CCGC	1 cut(s)	612
SspMI	CTAG	2 cut(s)	431, 530
StyD4I	CCNGG	2 cut(s)	127, 321
StyI	CCWWGG	1 cut(s)	691
TaaI	ACNGT	1 cut(s)	686
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	5 cut(s)	24, 58, 199, 246, 378
TasI	AATT	3 cut(s)	554, 796, 805
TauI	GCSGC	1 cut(s)	615
Tru1I	TTAA	3 cut(s)	267, 773, 795
Tru9I	TTAA	3 cut(s)	267, 773, 795
TscAI	CASTG	1 cut(s)	354
TseFI	GTSAC	2 cut(s)	170, 810
TseI	GCWGC	2 cut(s)	483, 589
Tsp45I	GTSAC	2 cut(s)	170, 810
TspDTI	ATGAA	2 cut(s)	9, 362
TspRI	CASTG	1 cut(s)	354
Van91I	CCANNNNNTGG	1 cut(s)	60
VpaK11BI	GGWCC	1 cut(s)	526
XbaI	TCTAGA	1 cut(s)	430
XmiI	GTMKAC	3 cut(s)	230, 246, 378
XmnI	GAANNNNTTC	1 cut(s)	554
XspI	CTAG	2 cut(s)	431, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.