Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0016345

Physical Location & Seq

Genomic Coordinates Reverse (-)

48061661 .. 48063042

Gene Structure 1382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003399

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTTGTTTGAGAAATATTCCTTCGAGAGTAAAGTGTGGCATACAAGCGAACCCAACCCAAGGGGAGGCGAGGACTTGGTTCTGATCGAAATAAAGGTCTACACTAAGATCGGAGCCACCTTGAGGATTGGTTCTCCAACGAAGTATGGTGAACCATACCACAGTGAAGGTAGAGAACTCATCATTTCTAATCTCGCTCGAAGCGAGCTATTATCCAATAGGAGTGACTATACATGGAGAATGGTCGAGTTCTTTTCAAACGCATTTAAGGAGGAGCCACTCCCCGATGATGTGCGACGATCTTGTATTGAAGAAGTATTCCGGGTGGTCGAAAAAGATCTAGTGGTGGCCTCATCATTTTCTGTTATTCATATCGACATATTGGAAGTGGTTGACCACGTGCTTGAGTCTGCTGCCGTTGCCTTTCTAGACGATGCGATATCATCAATCGAGAGTTTGGAGAAAGTAAGAGTTGATAGCTGTTTCTTGGGGTTAGAAGACTCTTGTGCTATTTGTATGGAGGACTTAATTGATAGAGAAGGAAAGAAACAATTCAAACAACCTAAGAGGAAGAGCAAGAGGCTGCTTGGATTACAAAGCCTCAGCACCACCATTGCTAAAAGGCCAAGAAAAGAGCCGCCCCCTTCGAGGACGCCGATGACAACTCCTTCGAGCCCGGGTTGCTCCACGACGGAGTCTCCGATGCTGGAGGGTGATTGTCGAGTTGCTCCCGGCCTCGTCAACAACGCTCCCGGCCTCGTCAACGATGCTCTCGGCCTCTGCTCCGATCGTTCTGCAGAACCATCAGTCTTCATTGCTACTCCGATAGGGCTCATCGACGACACAGAACCACCAGCCGCCATCGTTTTGCAGAACCAGATCCGGCGAGGACCCGATCCGGCGGAGTATCAACACACCTCGATCTCTCTCCTCTCTCTGTCACCGCCGTGGTCGCTGGCATTCAAGGTTGGTTTTCTGACGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

329

Amino Acids

36.28

Weight (kDa)

5.18

Isoelectric Point (pI)

58.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016345)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20142 FvH4_5g20161 FvH4_5g20170
rosa_laevigata	RLG00000003397 RLG00000003399
rosa_multiflora	Rmu_sc0005112.1_g000002 Rmu_sc0005112.1_g000003 Rmu_sc0009349.1_g000015
rosa_samantha	Rh7AG218900 Rh7AG219200 Rh7BG215400 Rh7CG231900 Rh7CG232100 Rh7DG226300 Rh7DG226500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	4 cut(s)	638, 858, 902, 944
AclWI	GGATC	2 cut(s)	874, 890
AcvI	CACGTG	1 cut(s)	400
AcyI	GRCGYC	1 cut(s)	653
AfiI	CCNNNNNNNGG	4 cut(s)	60, 65, 123, 648
AgsI	TTSAA	4 cut(s)	258, 311, 556, 964
AleI	CACNNNNGTG	1 cut(s)	946
AluBI	AGCT	2 cut(s)	208, 480
AluI	AGCT	2 cut(s)	208, 480
Alw26I	GTCTC	1 cut(s)	702
AlwI	GGATC	2 cut(s)	874, 890
Ama87I	CYCGRG	1 cut(s)	676
AoxI	GGCC	5 cut(s)	348, 623, 733, 754, 775
ApeKI	GCWGC	2 cut(s)	413, 583
ArsI	GACNNNNNNTTYG	4 cut(s)	81, 113, 652, 684
Asp700I	GAANNNNTTC	1 cut(s)	551
AspS9I	GGNCC	1 cut(s)	890
AsuC2I	CCSGG	5 cut(s)	323, 677, 678, 732, 753
AsuHPI	GGTGA	3 cut(s)	161, 725, 933
AvaI	CYCGRG	1 cut(s)	676
AvaII	GGWCC	1 cut(s)	890
BanII	GRGCYC	2 cut(s)	677, 834
BbrPI	CACGTG	1 cut(s)	400
BbsI	GAAGAC	2 cut(s)	504, 802
BbvCI	CCTCAGC	1 cut(s)	602
BbvI	GCAGC	2 cut(s)	400, 570
BccI	CCATC	2 cut(s)	811, 869
BceAI	ACGGC	2 cut(s)	401, 931
BcgI	CGANNNNNNTGC	2 cut(s)	776, 810
BcnI	CCSGG	5 cut(s)	323, 677, 678, 732, 753
BcoDI	GTCTC	1 cut(s)	702
BfaI	CTAG	2 cut(s)	341, 428
BfmI	CTRYAG	1 cut(s)	795
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	4 cut(s)	414, 584, 638, 858
BlsI	GCNGC	4 cut(s)	415, 585, 639, 859
Bme1390I	CCNGG	5 cut(s)	323, 677, 678, 732, 753
Bme18I	GGWCC	1 cut(s)	890
BmeT110I	CYCGRG	1 cut(s)	676
BmgT120I	GGNCC	1 cut(s)	890
BmiI	GGNNCC	3 cut(s)	115, 276, 892
BmrFI	CCNGG	5 cut(s)	323, 677, 678, 732, 753
BmsI	GCATC	3 cut(s)	424, 693, 757
BpiI	GAAGAC	2 cut(s)	504, 802
BpmI	CTGGAG	1 cut(s)	728
Bpu10I	CCTNAGC	1 cut(s)	602
BpuEI	CTTGAG	2 cut(s)	142, 425
BpuMI	CCSGG	5 cut(s)	323, 677, 678, 732, 753
BsaAI	YACGTR	1 cut(s)	400
BsaHI	GRCGYC	1 cut(s)	653
BsaJI	CCNNGG	3 cut(s)	59, 676, 947
BsaXI	ACNNNNNCTCC	2 cut(s)	682, 712
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 65, 123, 648
Bse3DI	GCAATG	2 cut(s)	612, 813
BseDI	CCNNGG	3 cut(s)	59, 676, 947
BseLI	CCNNNNNNNGG	4 cut(s)	60, 65, 123, 648
BseMI	GCAATG	2 cut(s)	612, 813
BseMII	CTCAG	1 cut(s)	616
BseRI	GAGGAG	2 cut(s)	287, 920
BseXI	GCAGC	2 cut(s)	400, 570
Bsh1285I	CGRYCG	1 cut(s)	790
BshFI	GGCC	5 cut(s)	350, 625, 735, 756, 777
BsiEI	CGRYCG	1 cut(s)	790
BsiHKCI	CYCGRG	1 cut(s)	676
BsiSI	CCGG	6 cut(s)	322, 677, 732, 753, 883, 899
BslI	CCNNNNNNNGG	4 cut(s)	60, 65, 123, 648
BsmAI	GTCTC	1 cut(s)	702
BsmI	GAATGC	1 cut(s)	959
BsnI	GGCC	5 cut(s)	350, 625, 735, 756, 777
BsoBI	CYCGRG	1 cut(s)	676
Bsp1286I	GDGCHC	2 cut(s)	677, 834
Bsp143I	GATC	8 cut(s)	84, 108, 299, 337, 787, 879, 895, 921
BspACI	CCGC	4 cut(s)	638, 858, 902, 944
BspANI	GGCC	5 cut(s)	350, 625, 735, 756, 777
BspCNI	CTCAG	1 cut(s)	615
BspLI	GGNNCC	3 cut(s)	115, 276, 892
BspMAI	CTGCAG	1 cut(s)	799
BspPI	GGATC	2 cut(s)	874, 890
BspQI	GCTCTTC	1 cut(s)	566
BsrDI	GCAATG	2 cut(s)	612, 813
BssECI	CCNNGG	3 cut(s)	59, 676, 947
BssMI	GATC	8 cut(s)	84, 108, 299, 337, 787, 879, 895, 921
BssNI	GRCGYC	1 cut(s)	653
BssT1I	CCWWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	566
BstACI	GRCGYC	1 cut(s)	653
BstBAI	YACGTR	1 cut(s)	400
BstC8I	GCNNGC	2 cut(s)	206, 957
BstDEI	CTNAG	3 cut(s)	105, 564, 602
BstDSI	CCRYGG	1 cut(s)	947
BstKTI	GATC	8 cut(s)	87, 111, 302, 340, 790, 882, 898, 924
BstMAI	GTCTC	1 cut(s)	702
BstMBI	GATC	8 cut(s)	84, 108, 299, 337, 787, 879, 895, 921
BstMCI	CGRYCG	1 cut(s)	790
BstMWI	GCNNNNNNNGC	3 cut(s)	419, 681, 952
BstSCI	CCNGG	5 cut(s)	321, 675, 676, 730, 751
BstSFI	CTRYAG	1 cut(s)	795
BstV1I	GCAGC	2 cut(s)	400, 570
BstV2I	GAAGAC	2 cut(s)	504, 802
BstX2I	RGATCY	2 cut(s)	337, 879
BstYI	RGATCY	2 cut(s)	337, 879
BsuRI	GGCC	5 cut(s)	350, 625, 735, 756, 777
BtgI	CCRYGG	1 cut(s)	947
BtsIMutI	CAGTG	1 cut(s)	169
Cac8I	GCNNGC	2 cut(s)	206, 957
Cfr13I	GGNCC	1 cut(s)	890
Cfr9I	CCCGGG	1 cut(s)	676
CseI	GACGC	1 cut(s)	661
CviAII	CATG	1 cut(s)	234
DdeI	CTNAG	3 cut(s)	105, 564, 602
DpnI	GATC	8 cut(s)	86, 110, 301, 339, 789, 881, 897, 923
DpnII	GATC	8 cut(s)	84, 108, 299, 337, 787, 879, 895, 921
Eam1104I	CTCTTC	1 cut(s)	566
EarI	CTCTTC	1 cut(s)	566
EciI	GGCGGA	1 cut(s)	917
Eco130I	CCWWGG	1 cut(s)	59
Eco24I	GRGCYC	2 cut(s)	677, 834
Eco32I	GATATC	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	890
Eco72I	CACGTG	1 cut(s)	400
Eco88I	CYCGRG	1 cut(s)	676
EcoO109I	RGGNCCY	1 cut(s)	890
EcoRV	GATATC	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	59
EcoT38I	GRGCYC	2 cut(s)	677, 834
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	1 cut(s)	237
FaiI	YATR	9 cut(s)	42, 147, 157, 231, 235, 372, 380, 518, 985
FatI	CATG	1 cut(s)	233
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	4 cut(s)	414, 584, 638, 858
FriOI	GRGCYC	2 cut(s)	677, 834
Fsp4HI	GCNGC	4 cut(s)	414, 584, 638, 858
FspBI	CTAG	2 cut(s)	341, 428
GluI	GCNGC	4 cut(s)	414, 584, 638, 858
GsuI	CTGGAG	1 cut(s)	728
HaeIII	GGCC	5 cut(s)	350, 625, 735, 756, 777
HapII	CCGG	6 cut(s)	322, 677, 732, 753, 883, 899
HgaI	GACGC	1 cut(s)	661
Hin1I	GRCGYC	1 cut(s)	653
Hin1II	CATG	1 cut(s)	237
HincII	GTYRAC	3 cut(s)	394, 742, 763
HindII	GTYRAC	3 cut(s)	394, 742, 763
HinfI	GANTC	3 cut(s)	407, 500, 695
HpaII	CCGG	6 cut(s)	322, 677, 732, 753, 883, 899
HphI	GGTGA	3 cut(s)	161, 725, 933
Hpy166II	GTNNAC	5 cut(s)	100, 152, 394, 742, 763
Hpy188I	TCNGA	6 cut(s)	84, 113, 702, 787, 825, 978
Hpy188III	TCNNGA	3 cut(s)	25, 428, 451
Hpy8I	GTNNAC	5 cut(s)	100, 152, 394, 742, 763
Hpy99I	CGWCG	3 cut(s)	300, 694, 842
HpyAV	CCTTC	5 cut(s)	31, 161, 533, 654, 678
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	2 cut(s)	797, 871
HpyF10VI	GCNNNNNNNGC	3 cut(s)	419, 681, 952
HpyF3I	CTNAG	3 cut(s)	105, 564, 602
HpySE526I	ACGT	1 cut(s)	399
Hsp92I	GRCGYC	1 cut(s)	653
Hsp92II	CATG	1 cut(s)	237
Kzo9I	GATC	8 cut(s)	84, 108, 299, 337, 787, 879, 895, 921
LguI	GCTCTTC	1 cut(s)	566
LmnI	GCTCC	6 cut(s)	113, 274, 689, 733, 754, 788
Lsp1109I	GCAGC	2 cut(s)	400, 570
LweI	GCATC	3 cut(s)	424, 693, 757
MaeI	CTAG	2 cut(s)	341, 428
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	2 cut(s)	224, 939
MalI	GATC	8 cut(s)	86, 110, 301, 339, 789, 881, 897, 923
MboI	GATC	8 cut(s)	84, 108, 299, 337, 787, 879, 895, 921
MboII	GAAGA	4 cut(s)	323, 509, 583, 802
MflI	RGATCY	2 cut(s)	337, 879
MhlI	GDGCHC	2 cut(s)	677, 834
MluCI	AATT	2 cut(s)	528, 551
MlyI	GAGTC	3 cut(s)	416, 494, 704
MmeI	TCCRAC	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	551
MseI	TTAA	2 cut(s)	267, 527
MslI	CAYNNNNRTG	1 cut(s)	946
MspI	CCGG	6 cut(s)	322, 677, 732, 753, 883, 899
MspR9I	CCNGG	5 cut(s)	323, 677, 678, 732, 753
Mva1269I	GAATGC	1 cut(s)	959
MwoI	GCNNNNNNNGC	3 cut(s)	419, 681, 952
NciI	CCSGG	5 cut(s)	323, 677, 678, 732, 753
NdeII	GATC	8 cut(s)	84, 108, 299, 337, 787, 879, 895, 921
NlaIII	CATG	1 cut(s)	237
NlaIV	GGNNCC	3 cut(s)	115, 276, 892
NmeAIII	GCCGAG	1 cut(s)	753
NmuCI	GTSAC	2 cut(s)	224, 939
OliI	CACNNNNGTG	1 cut(s)	946
PciSI	GCTCTTC	1 cut(s)	566
PcsI	WCGNNNNNNNCGW	3 cut(s)	201, 653, 698
PctI	GAATGC	1 cut(s)	959
PdmI	GAANNNNTTC	1 cut(s)	551
PflFI	GACNNNGTC	1 cut(s)	694
PkrI	GCNGC	4 cut(s)	415, 585, 639, 859
Ple19I	CGATCG	1 cut(s)	790
PleI	GAGTC	3 cut(s)	415, 494, 703
PmaCI	CACGTG	1 cut(s)	400
PmlI	CACGTG	1 cut(s)	400
PpsI	GAGTC	3 cut(s)	415, 494, 703
Ppu21I	YACGTR	1 cut(s)	400
PpuMI	RGGWCCY	1 cut(s)	890
Psp5II	RGGWCCY	1 cut(s)	890
PspCI	CACGTG	1 cut(s)	400
PspN4I	GGNNCC	3 cut(s)	115, 276, 892
PspPI	GGNCC	1 cut(s)	890
PspPPI	RGGWCCY	1 cut(s)	890
PstI	CTGCAG	1 cut(s)	799
PsuI	RGATCY	2 cut(s)	337, 879
PsyI	GACNNNGTC	1 cut(s)	694
PvuI	CGATCG	1 cut(s)	790
RseI	CAYNNNNRTG	1 cut(s)	946
SapI	GCTCTTC	1 cut(s)	566
SaqAI	TTAA	2 cut(s)	267, 527
SatI	GCNGC	4 cut(s)	414, 584, 638, 858
Sau3AI	GATC	8 cut(s)	84, 108, 299, 337, 787, 879, 895, 921
Sau96I	GGNCC	1 cut(s)	890
SchI	GAGTC	3 cut(s)	416, 494, 704
ScrFI	CCNGG	5 cut(s)	323, 677, 678, 732, 753
SduI	GDGCHC	2 cut(s)	677, 834
SetI	ASST	9 cut(s)	99, 122, 172, 210, 402, 482, 565, 920, 969
SfaNI	GCATC	3 cut(s)	424, 693, 757
SfcI	CTRYAG	1 cut(s)	795
SinI	GGWCC	1 cut(s)	890
SmaI	CCCGGG	1 cut(s)	678
SmiMI	CAYNNNNRTG	1 cut(s)	946
SmlI	CTYRAG	2 cut(s)	121, 404
SmoI	CTYRAG	2 cut(s)	121, 404
Sse9I	AATT	2 cut(s)	528, 551
SsiI	CCGC	4 cut(s)	638, 858, 902, 944
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	2 cut(s)	341, 428
StyD4I	CCNGG	5 cut(s)	321, 675, 676, 730, 751
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	1 cut(s)	402
TasI	AATT	2 cut(s)	528, 551
TauI	GCSGC	2 cut(s)	640, 860
Tru1I	TTAA	2 cut(s)	267, 527
Tru9I	TTAA	2 cut(s)	267, 527
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	2 cut(s)	224, 939
TseI	GCWGC	2 cut(s)	413, 583
Tsp45I	GTSAC	2 cut(s)	224, 939
TspDTI	ATGAA	2 cut(s)	359, 802
TspGWI	ACGGA	1 cut(s)	707
TspMI	CCCGGG	1 cut(s)	676
TspRI	CASTG	1 cut(s)	169
Tth111I	GACNNNGTC	1 cut(s)	694
VpaK11BI	GGWCC	1 cut(s)	890
XbaI	TCTAGA	1 cut(s)	427
XmaI	CCCGGG	1 cut(s)	676
XmiI	GTMKAC	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	551
XspI	CTAG	2 cut(s)	341, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.