Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005112.1

Orthogroup ID

OG0016345

Physical Location & Seq

Genomic Coordinates Reverse (-)

17552 .. 18316

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005112.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgttgtttgagaaatattcattcgagagtaaagtgtggcatacaagcgaacccaacccaaggggaggcgaggacttggttctgatcgaaataaaggtctacactaagatcggagccgccttgaggattggttctccaacgaagtatggcgaaccataccacagtgaaggtagagaactcatcatttctaatctctctcgtagcgagctattatccaataagagtgagtatacatggagaatggtcgagttcttttcaggcacatttaaggaggagccactccccgatgatgtgcgacgatcttgtattgaagaagtattccgggtggtcgaaaaagatctagtggtggcctcatcattttctgttattcatgtcgacatattggaagtggttgaccacgtgcttgagtctgctgccgttgcctttctcgacgatgcgatatcatcaatcgagggtttggagaaagtgagagttgatagctctttcctggggttagaagactcttgtgctatttgtatggaggacctaattgacagagacggcaagaaacaatttaaacctaagaggaagagcaagaggctgcttggatttcaaagcctcagcaccaccattgctaaaaggccaagaaaagagccgccccgtttgagggtaattgctcgcttgccctgctcacaccattttcatggagattgcattgtcaagtggctcaaaaacaatcatgtctgtcccctgtgccgataccaagtgggaggtcggttcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

254

Amino Acids

29.02

Weight (kDa)

8.11

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016345)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20142 FvH4_5g20161 FvH4_5g20170
rosa_laevigata	RLG00000003397 RLG00000003399
rosa_multiflora	Rmu_sc0005112.1_g000002 Rmu_sc0005112.1_g000003 Rmu_sc0009349.1_g000015
rosa_samantha	Rh7AG218900 Rh7AG219200 Rh7BG215400 Rh7CG231900 Rh7CG232100 Rh7DG226300 Rh7DG226500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	99, 230, 375
AciI	CCGC	2 cut(s)	117, 635
AcvI	CACGTG	1 cut(s)	400
AfiI	CCNNNNNNNGG	5 cut(s)	60, 65, 123, 645, 646
AgsI	TTSAA	3 cut(s)	311, 593, 760
AjnI	CCWGG	1 cut(s)	486
AluBI	AGCT	2 cut(s)	208, 480
AluI	AGCT	2 cut(s)	208, 480
Alw26I	GTCTC	1 cut(s)	531
AoxI	GGCC	2 cut(s)	348, 620
ApeKI	GCWGC	2 cut(s)	413, 580
ArsI	GACNNNNNNTTYG	2 cut(s)	81, 113
AspS9I	GGNCC	1 cut(s)	523
AsuC2I	CCSGG	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	523
BbrPI	CACGTG	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	504
BbvCI	CCTCAGC	1 cut(s)	599
BbvI	GCAGC	2 cut(s)	400, 567
BceAI	ACGGC	2 cut(s)	401, 556
BciT130I	CCWGG	1 cut(s)	488
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	531
BfaI	CTAG	1 cut(s)	341
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	4 cut(s)	117, 414, 581, 635
BlsI	GCNGC	4 cut(s)	118, 415, 582, 636
Bme1390I	CCNGG	2 cut(s)	323, 488
Bme18I	GGWCC	1 cut(s)	523
BmgT120I	GGNCC	1 cut(s)	523
BmiI	GGNNCC	2 cut(s)	115, 276
BmrFI	CCNGG	2 cut(s)	323, 488
BmsI	GCATC	1 cut(s)	424
BpiI	GAAGAC	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	599
BpuEI	CTTGAG	2 cut(s)	142, 425
BpuMI	CCSGG	1 cut(s)	323
BsaAI	YACGTR	1 cut(s)	400
BsaJI	CCNNGG	2 cut(s)	59, 487
Bsc4I	CCNNNNNNNGG	5 cut(s)	60, 65, 123, 645, 646
Bse3DI	GCAATG	1 cut(s)	609
BseBI	CCWGG	1 cut(s)	488
BseDI	CCNNGG	2 cut(s)	59, 487
BseLI	CCNNNNNNNGG	5 cut(s)	60, 65, 123, 645, 646
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	1 cut(s)	613
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	400, 567
BshFI	GGCC	2 cut(s)	350, 622
BsiSI	CCGG	1 cut(s)	322
BslFI	GGGAC	1 cut(s)	711
BslI	CCNNNNNNNGG	5 cut(s)	60, 65, 123, 645, 646
BsmAI	GTCTC	1 cut(s)	531
BsmBI	CGTCTC	1 cut(s)	531
BsmFI	GGGAC	1 cut(s)	711
BsnI	GGCC	2 cut(s)	350, 622
Bsp143I	GATC	4 cut(s)	84, 108, 299, 337
BspACI	CCGC	2 cut(s)	117, 635
BspANI	GGCC	2 cut(s)	350, 622
BspCNI	CTCAG	1 cut(s)	612
BspLI	GGNNCC	2 cut(s)	115, 276
BspQI	GCTCTTC	1 cut(s)	563
BsrDI	GCAATG	1 cut(s)	609
BssECI	CCNNGG	2 cut(s)	59, 487
BssMI	GATC	4 cut(s)	84, 108, 299, 337
BssNAI	GTATAC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	59
Bst1107I	GTATAC	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	488
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	563
BstBAI	YACGTR	1 cut(s)	400
BstC8I	GCNNGC	3 cut(s)	206, 658, 662
BstDEI	CTNAG	3 cut(s)	105, 561, 599
BstKTI	GATC	4 cut(s)	87, 111, 302, 340
BstMAI	GTCTC	1 cut(s)	531
BstMBI	GATC	4 cut(s)	84, 108, 299, 337
BstMWI	GCNNNNNNNGC	2 cut(s)	419, 666
BstNI	CCWGG	1 cut(s)	488
BstSCI	CCNGG	2 cut(s)	321, 486
BstV1I	GCAGC	2 cut(s)	400, 567
BstV2I	GAAGAC	1 cut(s)	504
BstX2I	RGATCY	1 cut(s)	337
BstXI	CCANNNNNNTGG	1 cut(s)	683
BstYI	RGATCY	1 cut(s)	337
BstZ17I	GTATAC	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	350, 622
BtsIMutI	CAGTG	1 cut(s)	169
Cac8I	GCNNGC	3 cut(s)	206, 658, 662
Cfr13I	GGNCC	1 cut(s)	523
CviAII	CATG	4 cut(s)	234, 371, 683, 719
DdeI	CTNAG	3 cut(s)	105, 561, 599
DpnI	GATC	4 cut(s)	86, 110, 301, 339
DpnII	GATC	4 cut(s)	84, 108, 299, 337
DraI	TTTAAA	1 cut(s)	556
Eam1104I	CTCTTC	1 cut(s)	563
EarI	CTCTTC	1 cut(s)	563
Eco130I	CCWWGG	1 cut(s)	59
Eco32I	GATATC	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	523
Eco72I	CACGTG	1 cut(s)	400
EcoO109I	RGGNCCY	1 cut(s)	523
EcoRII	CCWGG	1 cut(s)	486
EcoRV	GATATC	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	59
Esp3I	CGTCTC	1 cut(s)	531
FaeI	CATG	4 cut(s)	237, 374, 686, 722
FaqI	GGGAC	1 cut(s)	711
FatI	CATG	4 cut(s)	233, 370, 682, 718
FblI	GTMKAC	3 cut(s)	99, 230, 375
Fnu4HI	GCNGC	4 cut(s)	117, 414, 581, 635
Fsp4HI	GCNGC	4 cut(s)	117, 414, 581, 635
FspBI	CTAG	1 cut(s)	341
GluI	GCNGC	4 cut(s)	117, 414, 581, 635
HaeIII	GGCC	2 cut(s)	350, 622
HapII	CCGG	1 cut(s)	322
Hin1II	CATG	4 cut(s)	237, 374, 686, 722
HincII	GTYRAC	2 cut(s)	376, 394
HindII	GTYRAC	2 cut(s)	376, 394
HinfI	GANTC	2 cut(s)	407, 500
HpaII	CCGG	1 cut(s)	322
Hpy166II	GTNNAC	4 cut(s)	100, 231, 376, 394
Hpy188I	TCNGA	2 cut(s)	84, 113
Hpy188III	TCNNGA	2 cut(s)	25, 428
Hpy8I	GTNNAC	4 cut(s)	100, 231, 376, 394
Hpy99I	CGWCG	2 cut(s)	300, 434
HpyAV	CCTTC	1 cut(s)	161
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	1 cut(s)	693
HpyF10VI	GCNNNNNNNGC	2 cut(s)	419, 666
HpyF3I	CTNAG	3 cut(s)	105, 561, 599
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	4 cut(s)	237, 374, 686, 722
Kzo9I	GATC	4 cut(s)	84, 108, 299, 337
LguI	GCTCTTC	1 cut(s)	563
LmnI	GCTCC	2 cut(s)	113, 274
LpnPI	CCDG	6 cut(s)	243, 335, 473, 500, 679, 743
Lsp1109I	GCAGC	2 cut(s)	400, 567
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	1 cut(s)	341
MaeII	ACGT	1 cut(s)	399
MalI	GATC	4 cut(s)	86, 110, 301, 339
MboI	GATC	4 cut(s)	84, 108, 299, 337
MboII	GAAGA	3 cut(s)	323, 509, 580
MflI	RGATCY	1 cut(s)	337
MluCI	AATT	3 cut(s)	528, 551, 651
MlyI	GAGTC	2 cut(s)	416, 494
MmeI	TCCRAC	1 cut(s)	161
MseI	TTAA	2 cut(s)	267, 555
MslI	CAYNNNNRTG	1 cut(s)	681
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	2 cut(s)	323, 488
MvaI	CCWGG	1 cut(s)	488
MwoI	GCNNNNNNNGC	2 cut(s)	419, 666
NciI	CCSGG	1 cut(s)	323
NdeII	GATC	4 cut(s)	84, 108, 299, 337
NlaIII	CATG	4 cut(s)	237, 374, 686, 722
NlaIV	GGNNCC	2 cut(s)	115, 276
PciSI	GCTCTTC	1 cut(s)	563
PkrI	GCNGC	4 cut(s)	118, 415, 582, 636
PleI	GAGTC	2 cut(s)	415, 494
PmaCI	CACGTG	1 cut(s)	400
PmlI	CACGTG	1 cut(s)	400
PpsI	GAGTC	2 cut(s)	415, 494
Ppu21I	YACGTR	1 cut(s)	400
PpuMI	RGGWCCY	1 cut(s)	523
Psp5II	RGGWCCY	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	486
PspCI	CACGTG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	486
PspN4I	GGNNCC	2 cut(s)	115, 276
PspPI	GGNCC	1 cut(s)	523
PspPPI	RGGWCCY	1 cut(s)	523
PsuI	RGATCY	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	681
SalI	GTCGAC	1 cut(s)	374
SapI	GCTCTTC	1 cut(s)	563
SaqAI	TTAA	2 cut(s)	267, 555
SatI	GCNGC	4 cut(s)	117, 414, 581, 635
Sau3AI	GATC	4 cut(s)	84, 108, 299, 337
Sau96I	GGNCC	1 cut(s)	523
SchI	GAGTC	2 cut(s)	416, 494
ScrFI	CCNGG	2 cut(s)	323, 488
SetI	ASST	8 cut(s)	99, 172, 210, 402, 482, 528, 562, 754
SfaNI	GCATC	1 cut(s)	424
SinI	GGWCC	1 cut(s)	523
SmiMI	CAYNNNNRTG	1 cut(s)	681
SmlI	CTYRAG	2 cut(s)	121, 404
SmoI	CTYRAG	2 cut(s)	121, 404
Sse9I	AATT	3 cut(s)	528, 551, 651
SsiI	CCGC	2 cut(s)	117, 635
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	1 cut(s)	341
StyD4I	CCNGG	2 cut(s)	321, 486
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	7 cut(s)	24, 87, 246, 330, 375, 429, 450
TasI	AATT	3 cut(s)	528, 551, 651
TauI	GCSGC	2 cut(s)	119, 637
Tru1I	TTAA	2 cut(s)	267, 555
Tru9I	TTAA	2 cut(s)	267, 555
TscAI	CASTG	1 cut(s)	169
TseI	GCWGC	2 cut(s)	413, 580
TspDTI	ATGAA	3 cut(s)	9, 359, 671
TspRI	CASTG	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	523
XmiI	GTMKAC	3 cut(s)	99, 230, 375
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.